Cla013535 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013535
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Multiprotein bridging factor 1b (AHRD V1 ***- Q152U8_SOLLC); contains Interpro domain(s) IPR013729 Multiprotein bridging factor 1, N-terminal
Location	Chr2 : 28295812 .. 28296995 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAATCGGACCACTTTCACAGGATTGGGAACCGGTGGTCATCAGGAAGAAGGCACCCAACGCCGCCGCAAAGAAGGATGAGAAAGCGGTTAATGCCGCACGGCGAGCCGGGGCAGAGATTGAAACCATAAAGAAATGTGAGCTCTCTATCTTTAATCAATTATCCCTTTGATTTCCCAATTGAATAACAACCCAGTCGCTGTTTTCTTGTTTTTGTTTTGACTTTCAACTCTACTTATCCGTAAATTGTTAACTGTTAAGCGCGGAGGTAATGGTAATCGAGTTTTTGGGTTGGAAAGATACAACCAAGTTTCATATTGGGAGGCCATTTAGATTGTTTTTTTCAACTGGGTATCACATTTTTTAATGGATCGAATGGGCATGATCATTTGGGACTTGGTGTTGGCCCTTACAGGGTTGGGCTATGGGTATCTGTTTCAATTGCCTTATATTCTGCTTATGTTTGTTCATAATTAGTCAGGAGTCTGTTTTATGCAGTGAAATTTAGTGTTGCAATGATACTTTTTATGCCTTTTGCAGCTGCTGCTGGGTCAAACAAATCAGCCTCTAGCAGTACTAGTTTGAATACTAGGAAGCTTGACGAAGAGACTGAGAACCTTTCTCGTGAGTACTTCTGGATTACATTCGCGCATAGCATGGTTGGATAAGGGCTTCTTTGTTTTTGTTTATCTCTGGTTTCAATCATCAGGGGATTCGTTGGTTTCATATCAGAGAAAGGGCATGCAAGCAGTGCATCACATGATATATTTACTATCTCAATTACTTTTAGGATTTGTACTGCTTCATATTTCGCTTTAGTGTTATATTTTCTTAGAATGATCATTCGTTATTATTTTGTCAATTGGATGTTTTATTTTGATTCTAGATGATCGTGTCCCAACTGAGCTGAAGAAAGCAATTATGCATGCTCGAACAGAGAAGAAGCTTACACAGTCTCAGCTTGCTCAGGTATGATTGTCCCACACTCTTTGTTGGCTCGTTATCTATTATGTGCACGTGTTAATGATGACCTGGATTTACTTTTTTCTTCCCCTGTAGATTATTAATGAAAAGCCTCAAGTTATCCAGGAGTACGAGTCCGGAAAAGCTATTCCAAATCAACAAATAATAACCAAACTTGAGAGAGCTCTGGGAACAAAACTGCGTGGGAAGAAATAA

mRNA sequence

ATGGCTGGAATCGGACCACTTTCACAGGATTGGGAACCGGTGGTCATCAGGAAGAAGGCACCCAACGCCGCCGCAAAGAAGGATGAGAAAGCGGTTAATGCCGCACGGCGAGCCGGGGCAGAGATTGAAACCATAAAGAAATCTGCTGCTGGGTCAAACAAATCAGCCTCTAGCAGTACTAGTTTGAATACTAGGAAGCTTGACGAAGAGACTGAGAACCTTTCTCATGATCGTGTCCCAACTGAGCTGAAGAAAGCAATTATGCATGCTCGAACAGAGAAGAAGCTTACACAGTCTCAGCTTGCTCAGATTATTAATGAAAAGCCTCAAGTTATCCAGGAGTACGAGTCCGGAAAAGCTATTCCAAATCAACAAATAATAACCAAACTTGAGAGAGCTCTGGGAACAAAACTGCGTGGGAAGAAATAA

Coding sequence (CDS)

ATGGCTGGAATCGGACCACTTTCACAGGATTGGGAACCGGTGGTCATCAGGAAGAAGGCACCCAACGCCGCCGCAAAGAAGGATGAGAAAGCGGTTAATGCCGCACGGCGAGCCGGGGCAGAGATTGAAACCATAAAGAAATCTGCTGCTGGGTCAAACAAATCAGCCTCTAGCAGTACTAGTTTGAATACTAGGAAGCTTGACGAAGAGACTGAGAACCTTTCTCATGATCGTGTCCCAACTGAGCTGAAGAAAGCAATTATGCATGCTCGAACAGAGAAGAAGCTTACACAGTCTCAGCTTGCTCAGATTATTAATGAAAAGCCTCAAGTTATCCAGGAGTACGAGTCCGGAAAAGCTATTCCAAATCAACAAATAATAACCAAACTTGAGAGAGCTCTGGGAACAAAACTGCGTGGGAAGAAATAA

Protein sequence

MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSSTSLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIITKLERALGTKLRGKK

Homology

[Close]

BLAST of Cla013535 vs. Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.5e-63
Identity = 119/142 (83.80%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGP++QDWEPVVIRK+APNAAAK+DEK VNAARR+GA+IET++K  AGSNK+ASS T
Sbjct: 1   MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGT 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNT+KLD++TENLSHDRVPTELKKAIM AR EKKLTQSQLA +INEKPQVIQEYESGKA
Sbjct: 61  SLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQI++KLERALG KLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.2e-61
Identity = 116/142 (81.69%), Postives = 131/142 (92.25%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGP++QDWEPVVIRKK  NAAAK+DEK VNAARR+GA+IET++K  AG+NK+ASS T
Sbjct: 1   MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNT+ LD++TENL+H+RVPTELKKAIM ART+KKLTQSQLAQIINEKPQVIQEYESGKA
Sbjct: 61  SLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQI++KLERALG KLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-34
Identity = 72/139 (51.80%), Postives = 97/139 (69.78%), Query Frame = 1


Query: 5   GPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSSTS--L 64
           G ++QDWEPVV+ K    +   +D KAVNAA R G  ++T+KK  AGSNK   S+    +
Sbjct: 7   GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66

Query: 65  NTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKAIP 124
           NT+KL+EETE  + DRV  E++  I  AR EKK++Q+ LA+ INE+ QV+QEYE+GKA+P
Sbjct: 67  NTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVP 126

Query: 125 NQQIITKLERALGTKLRGK 142
           NQ ++ K+E+ LG KLRGK
Sbjct: 127 NQAVLAKMEKVLGVKLRGK 145

[Close]

BLAST of Cla013535 vs. Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.0e-33
Identity = 76/133 (57.14%), Postives = 91/133 (68.42%), Query Frame = 1


Query: 10  DWEPV-VIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSSTSLNTRKLD 69
           DW+ V V+RKK P+AA  K ++AV AA+R G ++ET KK AAG NK      + NT KLD
Sbjct: 5   DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNKQ--HFITKNTAKLD 64

Query: 70  EETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIIT 129
            ETE L HDRVP E+ K I   R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ 
Sbjct: 65  RETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMG 124

Query: 130 KLERALGTKLRGK 142
           K+ERA+G KLRGK
Sbjct: 125 KIERAIGLKLRGK 135

[Close]

BLAST of Cla013535 vs. Swiss-Prot
Match: EDF1_RAT (Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.9e-33
Identity = 76/133 (57.14%), Postives = 90/133 (67.67%), Query Frame = 1


Query: 10  DWEPV-VIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSSTSLNTRKLD 69
           DW+ V V+RKK P AA  K ++A+ AA+R G ++ET KK AAG NK    S + NT KLD
Sbjct: 5   DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQ--HSITKNTAKLD 64

Query: 70  EETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIIT 129
            ETE L HDRV  E+ K I   R  K LTQ  LA  INEKPQVI +YESG+AIPN Q++ 
Sbjct: 65  RETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLG 124

Query: 130 KLERALGTKLRGK 142
           K+ERA+G KLRGK
Sbjct: 125 KIERAIGLKLRGK 135

[Close]

BLAST of Cla013535 vs. TrEMBL
Match: A0A0A0KGV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G157120 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-69
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           +LNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQ+INEKPQVIQEYESGKA
Sbjct: 61  TLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQIITKLERALG KLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. TrEMBL
Match: A0A059BND1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01243 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-64
Identity = 125/142 (88.03%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAG+GP+SQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET++K+ AGSNK+ASSST
Sbjct: 1   MAGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVRKANAGSNKAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVP ELKKAIM AR +KKLTQSQLAQ++NEKPQ+IQEYESGKA
Sbjct: 61  SLNTRKLDEETENLAHDRVPNELKKAIMQARMDKKLTQSQLAQLVNEKPQIIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQ+ITKLERALG KLRGKK
Sbjct: 121 IPNQQLITKLERALGVKLRGKK 142

[Close]

BLAST of Cla013535 vs. TrEMBL
Match: A0A0D2R513_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G271900 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-64
Identity = 126/142 (88.73%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAP AAAKKDEK VNAARRAGAEIE++KKS AG+N++ASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPTAAAKKDEKVVNAARRAGAEIESVKKSNAGTNRAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIMHAR EKKLTQ+QLAQ+INEKPQ+IQEYESGKA
Sbjct: 61  SLNTRKLDEETENLAHDRVPTELKKAIMHARVEKKLTQAQLAQLINEKPQIIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQII KLERALG KLRGKK
Sbjct: 121 IPNQQIIGKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. TrEMBL
Match: A0A061F7J0_THECC (Multiprotein bridging factor 1B OS=Theobroma cacao GN=TCM_031864 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-64
Identity = 128/142 (90.14%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAP+AAAKKDEK VNAARRAGAEIE+IKKS AGSN++ASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPSAAAKKDEKVVNAARRAGAEIESIKKSNAGSNRAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIM AR EKKLTQ+QLAQ+INEKPQ+IQEYESGKA
Sbjct: 61  SLNTRKLDEETENLAHDRVPTELKKAIMQARMEKKLTQAQLAQMINEKPQIIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQII KLERALGTKLRGKK
Sbjct: 121 IPNQQIIGKLERALGTKLRGKK 142

[Close]

BLAST of Cla013535 vs. TrEMBL
Match: S4SF70_GOSHI (Multiprotein bridging factor 1 transcriptional coactivator OS=Gossypium hirsutum GN=MBF1a PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 126/142 (88.73%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAP AAAKKDEK VNAARRAGAEIE++KKS AG+N++ASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPTAAAKKDEKVVNAARRAGAEIESVKKSNAGTNRAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIMHAR EKKLTQ+QLAQ+INEKPQ+IQEYESGKA
Sbjct: 61  SLNTRKLDEETENLAHDRVPTELKKAIMHARMEKKLTQAQLAQLINEKPQIIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQII KLERALG KLRGKK
Sbjct: 121 IPNQQIIGKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. NCBI nr
Match: gi|659094807|ref|XP_008448251.1| (PREDICTED: multiprotein-bridging factor 1b [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQ+INEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQIITKLERALG KLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. NCBI nr
Match: gi|449463112|ref|XP_004149278.1| (PREDICTED: multiprotein-bridging factor 1b [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-69
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           +LNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQ+INEKPQVIQEYESGKA
Sbjct: 61  TLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQIITKLERALG KLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. NCBI nr
Match: gi|1009109707|ref|XP_015891645.1| (PREDICTED: multiprotein-bridging factor 1b [Ziziphus jujuba])

HSP 1 Score: 255.0 bits (650), Expect = 7.8e-65
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAG+GP+SQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGA+IETIKKS AG+NK+ASSST
Sbjct: 1   MAGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIETIKKSTAGTNKAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+H RVPTEL+KAIM ARTEKKLTQSQLAQ+INEKPQVIQEYE GKA
Sbjct: 61  SLNTRKLDEETENLAHGRVPTELRKAIMQARTEKKLTQSQLAQLINEKPQVIQEYECGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQIITKLERALG KLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Cla013535 vs. NCBI nr
Match: gi|702365699|ref|XP_010060705.1| (PREDICTED: multiprotein-bridging factor 1b [Eucalyptus grandis])

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64
Identity = 125/142 (88.03%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAG+GP+SQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET++K+ AGSNK+ASSST
Sbjct: 1   MAGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVRKANAGSNKAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVP ELKKAIM AR +KKLTQSQLAQ++NEKPQ+IQEYESGKA
Sbjct: 61  SLNTRKLDEETENLAHDRVPNELKKAIMQARMDKKLTQSQLAQLVNEKPQIIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQ+ITKLERALG KLRGKK
Sbjct: 121 IPNQQLITKLERALGVKLRGKK 142

[Close]

BLAST of Cla013535 vs. NCBI nr
Match: gi|823154381|ref|XP_012477064.1| (PREDICTED: multiprotein-bridging factor 1b-like [Gossypium raimondii])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 126/142 (88.73%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAP AAAKKDEK VNAARRAGAEIE++KKS AG+N++ASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPTAAAKKDEKVVNAARRAGAEIESVKKSNAGTNRAASSST 60

Query: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQIINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIMHAR EKKLTQ+QLAQ+INEKPQ+IQEYESGKA
Sbjct: 61  SLNTRKLDEETENLAHDRVPTELKKAIMHARVEKKLTQAQLAQLINEKPQIIQEYESGKA 120

Query: 121 IPNQQIITKLERALGTKLRGKK 143
           IPNQQII KLERALG KLRGKK
Sbjct: 121 IPNQQIIGKLERALGAKLRGKK 142

The following BLAST results are available for this feature:

BLAST of Cla013535 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBF1B_ARATH	9.5e-63	83.80	Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1	[more]
MBF1A_ARATH	5.2e-61	81.69	Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1	[more]
MBF1C_ARATH	4.2e-34	51.80	Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1	[more]
EDF1_CHICK	6.0e-33	57.14	Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE...	[more]
EDF1_RAT	7.9e-33	57.14	Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 S...	[more]

BLAST of Cla013535 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGV6_CUCSA	1.6e-69	97.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G157120 PE=4 SV=1	[more]
A0A059BND1_EUCGR	2.7e-64	88.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01243 PE=4 SV=1	[more]
A0A0D2R513_GOSRA	7.8e-64	88.73	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G271900 PE=4 SV=1	[more]
A0A061F7J0_THECC	7.8e-64	90.14	Multiprotein bridging factor 1B OS=Theobroma cacao GN=TCM_031864 PE=4 SV=1	[more]
S4SF70_GOSHI	1.0e-63	88.73	Multiprotein bridging factor 1 transcriptional coactivator OS=Gossypium hirsutum...	[more]

BLAST of Cla013535 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094807\|ref\|XP_008448251.1\|	1.1e-69	98.59	PREDICTED: multiprotein-bridging factor 1b [Cucumis melo]	[more]
gi\|449463112\|ref\|XP_004149278.1\|	2.3e-69	97.89	PREDICTED: multiprotein-bridging factor 1b [Cucumis sativus]	[more]
gi\|1009109707\|ref\|XP_015891645.1\|	7.8e-65	90.85	PREDICTED: multiprotein-bridging factor 1b [Ziziphus jujuba]	[more]
gi\|702365699\|ref\|XP_010060705.1\|	3.9e-64	88.03	PREDICTED: multiprotein-bridging factor 1b [Eucalyptus grandis]	[more]
gi\|823154381\|ref\|XP_012477064.1\|	1.1e-63	88.73	PREDICTED: multiprotein-bridging factor 1b-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001387	Cro/C1-type_HTH
IPR010982	Lambda_DNA-bd_dom_sf
IPR013729	MBF1_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0006904	vesicle docking involved in exocytosis
biological_process	GO:0009723	response to ethylene
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005623	cell
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11011	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU13808	watermelon EST collection version 2.0	transcribed_cluster
WMU21258	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU36234	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU42381	watermelon EST collection version 2.0	transcribed_cluster
WMU42480	watermelon EST collection version 2.0	transcribed_cluster
WMU60128	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013535	Cla013535.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU36234	WMU36234	transcribed_cluster
WMU42480	WMU42480	transcribed_cluster
WMU42381	WMU42381	transcribed_cluster
WMU11011	WMU11011	transcribed_cluster
WMU21258	WMU21258	transcribed_cluster
WMU60128	WMU60128	transcribed_cluster
WMU13808	WMU13808	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001387	Cro/C1-type helix-turn-helix domain	PFAM	PF01381	HTH_3	coord: 87..138 score: 8.6
IPR001387	Cro/C1-type helix-turn-helix domain	SMART	SM00530	mbf_short4	coord: 86..141 score: 4.0
IPR001387	Cro/C1-type helix-turn-helix domain	PROFILE	PS50943	HTH_CROC1	coord: 87..141 score: 12
IPR010982	Lambda repressor-like, DNA-binding domain	GENE3D	G3DSA:1.10.260.40		coord: 82..137 score: 1.8
IPR010982	Lambda repressor-like, DNA-binding domain	unknown	SSF47413	lambda repressor-like DNA-binding domains	coord: 80..138 score: 3.75
IPR013729	Multiprotein bridging factor 1, N-terminal	PFAM	PF08523	MBF1	coord: 9..79 score: 2.0
None	No IPR available	PANTHER	PTHR10245	ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1	coord: 52..141 score: 3.8
None	No IPR available	PANTHER	PTHR10245:SF23	MULTIPROTEIN-BRIDGING FACTOR 1A-RELATED	coord: 52..141 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013535	Cla97C07G131070	Watermelon (97103) v2	wmwmbB347
Cla013535	Cla97C02G043670	Watermelon (97103) v2	wmwmbB316
Cla013535	MELO3C013580	Melon (DHL92) v3.5.1	mewmB114
Cla013535	ClCG07G002730	Watermelon (Charleston Gray)	wcgwmB388
Cla013535	ClCG02G017890	Watermelon (Charleston Gray)	wcgwmB197
Cla013535	Cucsa.384830	Cucumber (Gy14) v1	cgywmB696
Cla013535	CmaCh02G000870	Cucurbita maxima (Rimu)	cmawmB588
Cla013535	CmaCh11G018940	Cucurbita maxima (Rimu)	cmawmB125
Cla013535	CmaCh20G002110	Cucurbita maxima (Rimu)	cmawmB540
Cla013535	CmoCh19G010540	Cucurbita moschata (Rifu)	cmowmB493
Cla013535	CmoCh11G019750	Cucurbita moschata (Rifu)	cmowmB112
Cla013535	CmoCh02G000870	Cucurbita moschata (Rifu)	cmowmB582
Cla013535	CmoCh20G002310	Cucurbita moschata (Rifu)	cmowmB530
Cla013535	Lsi10G015990	Bottle gourd (USVL1VR-Ls)	lsiwmB073
Cla013535	Cp4.1LG15g08340	Cucurbita pepo (Zucchini)	cpewmB265
Cla013535	Cp4.1LG16g07650	Cucurbita pepo (Zucchini)	cpewmB298
Cla013535	Cp4.1LG04g02950	Cucurbita pepo (Zucchini)	cpewmB668
Cla013535	Cp4.1LG05g15120	Cucurbita pepo (Zucchini)	cpewmB750
Cla013535	MELO3C013580.2	Melon (DHL92) v3.6.1	medwmB112
Cla013535	Carg19138	Silver-seed gourd	carwmB0719
Cla013535	Carg13597	Silver-seed gourd	carwmB0034
Cla013535	Bhi05G001639	Wax gourd	wgowmB277
Cla013535	Bhi10G000840	Wax gourd	wgowmB390

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla013535	Cla002254	Watermelon (97103) v1	wmwmB109

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013535	Cucumber (Chinese Long) v2	cuwmB514
Cla013535	Cucurbita pepo (Zucchini)	cpewmB054
Cla013535	Cucurbita pepo (Zucchini)	cpewmB303
Cla013535	Cucurbita pepo (Zucchini)	cpewmB724
Cla013535	Bottle gourd (USVL1VR-Ls)	lsiwmB078
Cla013535	Cucumber (Gy14) v2	cgybwmB481
Cla013535	Silver-seed gourd	carwmB0030
Cla013535	Silver-seed gourd	carwmB0412
Cla013535	Silver-seed gourd	carwmB0530
Cla013535	Cucumber (Chinese Long) v3	cucwmB082
Cla013535	Cucumber (Chinese Long) v3	cucwmB538
Cla013535	Watermelon (97103) v2	wmwmbB339
Cla013535	Wax gourd	wgowmB396
Cla013535	Watermelon (97103) v1	wmwmB093
Cla013535	Cucumber (Gy14) v1	cgywmB413
Cla013535	Cucumber (Gy14) v1	cgywmB698
Cla013535	Cucurbita maxima (Rimu)	cmawmB500
Cla013535	Cucurbita maxima (Rimu)	cmawmB524
Cla013535	Cucurbita maxima (Rimu)	cmawmB593
Cla013535	Cucurbita moschata (Rifu)	cmowmB199
Cla013535	Cucurbita moschata (Rifu)	cmowmB513
Cla013535	Cucurbita moschata (Rifu)	cmowmB586
Cla013535	Watermelon (Charleston Gray)	wcgwmB245