Cla013234 (gene) Watermelon (97103) v1

Overview
NameCla013234
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 13344786 .. 13345103 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACGCCTACAGAAGCCGAAATGAATGACGCCCTCACAACCATCGCCAAACCGGGGTCAAAGTGGAACACTTTCCCAAATGGCATTCAGACACTAGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGTTTTACTTCATCAAGCGGTCGCTAATCCCCATAACGCATGACGCCTCAATTTCAGGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAAACGTGGGACGCATCATTGCCCCACAGATTCGGGGATTGTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGA

mRNA sequence

ATGTCGACGCCTACAGAAGCCGAAATGAATGACGCCCTCACAACCATCGCCAAACCGGGGTCAAAGTGGAACACTTTCCCAAATGGCATTCAGACACTAGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGTTTTACTTCATCAAGCGGTCGCTAATCCCCATAACGCATGACGCCTCAATTTCAGGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAAACGTGGGACGCATCATTGCCCCACAGATTCGGGGATTGTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGA

Coding sequence (CDS)

ATGTCGACGCCTACAGAAGCCGAAATGAATGACGCCCTCACAACCATCGCCAAACCGGGGTCAAAGTGGAACACTTTCCCAAATGGCATTCAGACACTAGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGTTTTACTTCATCAAGCGGTCGCTAATCCCCATAACGCATGACGCCTCAATTTCAGGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAAACGTGGGACGCATCATTGCCCCACAGATTCGGGGATTGTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGA

Protein sequence

MSTPTEAEMNDALTTIAKPGSKWNTFPNGIQTLAPTCLIAEANLWFYFIKRSLIPITHDASISGDRAMVIYCIMRGIRLNVGRIIAPQIRGLFSSQGVSYSSPFL
Homology
[Close]
BLAST of Cla013234 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 25/84 (29.76%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 6   EAEMNDALTTIAKPGSKWNTFPNGIQTLAPTCLIAEANLWFYFIKRSLIPITHDASISGD 65
           E ++++ +  +   G++W     G  T    CL     +W++F++  L+P +H   +  +
Sbjct: 121 EDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKE 180

Query: 66  RAMVIYCIMRGIRLNVGRIIAPQI 90
           RA+++YC+M+G  LNVGR+I  Q+
Sbjct: 181 RAILLYCMMKGRPLNVGRMIRQQV 204

[Close]
BLAST of Cla013234 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.2e-06
Identity = 27/81 (33.33%), Postives = 44/81 (54.32%), Query Frame = 1 

Query: 1  MSTPTEAEMNDALTTIAKPGSKWNTFPNGIQTLAPTCLIAEANLWFYFIKRSLIPITHDA 60
          +  P   ++  AL  +  P +  +  P G   L P  L  EA +W  F+K+ ++P  HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 SISGDRAMVIYCIMRGIRLNV 82
          +IS +R M++YCIM+ I + V
Sbjct: 70 NISMERVMLVYCIMKEILVEV 90

[Close]
BLAST of Cla013234 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.4e-06
Identity = 30/85 (35.29%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 6   EAEMNDALTTIAKPGSKWNTFPNGIQTLAPTCLIAEANLWFYFIKRSLIPITHDASISGD 65
           E ++ + L TIA  G++W     G  T     L   A +W++F+   L+  TH  +IS +
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RAMVIYCIMRGIRLNVGRIIAPQIR 91
           RA+++Y ++ G  +NVGR+I  QIR
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIR 238

[Close]
BLAST of Cla013234 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 25/84 (29.76%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 6   EAEMNDALTTIAKPGSKWNTFPNGIQTLAPTCLIAEANLWFYFIKRSLIPITHDASISGD 65
           E ++++ +  +   G++W     G  T    CL     +W++F++  L+P +H   +  +
Sbjct: 121 EDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKE 180

Query: 66  RAMVIYCIMRGIRLNVGRIIAPQI 90
           RA+++YC+M+G  LNVGR+I  Q+
Sbjct: 181 RAILLYCMMKGRPLNVGRMIRQQV 204

The following BLAST results are available for this feature:
BLAST of Cla013234 vs. TrEMBL
Match NameE-valueIdentityDescription
W9S7D3_9ROSA1.1e-0629.76Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1[more]
A0A0A0L2P0_CUCSA7.2e-0633.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
W9RBS1_9ROSA9.4e-0635.29Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
BLAST of Cla013234 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703121924|ref|XP_010102456.1|1.6e-0629.76hypothetical protein L484_006967 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013234Cla013234.1mRNA