Cla013232 (gene) Watermelon (97103) v1

Overview
NameCla013232
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 13342048 .. 13342464 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCTTCTGAAGGAATACATGCAGAAGAACGACGCCTTGATGCAAACCCAGGCGTCGTCCATCAGGAATTTAGAGCTTCAGATTGGCCAGATCGCTGGAGAGCTTAAGACGAGGCAAAAAGGATCTCTTCCGAGCGACACCAAAGCCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAGTGTCAAGCTGTGACACTACGAAGTGGAAGAGCCATGAATGAACTTCCCCGCCCAGGGAAGAAAACTCTAGCTAACGAGACTGAGAATCACTCATACGAACCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACCATTGAATCTGACCATTCAACACAACAAAACCAAGCTGACACGCTTGTTGATGCATCTTTCCCTGATAAACTTCTTTGCATGTCAGCTTGA

mRNA sequence

ATGGAAGCTCTTCTGAAGGAATACATGCAGAAGAACGACGCCTTGATGCAAACCCAGGCGTCGTCCATCAGGAATTTAGAGCTTCAGATTGGCCAGATCGCTGGAGAGCTTAAGACGAGGCAAAAAGGATCTCTTCCGAGCGACACCAAAGCCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAGTGTCAAGCTGTGACACTACGAAGTGGAAGAGCCATGAATGAACTTCCCCGCCCAGGGAAGAAAACTCTAGCTAACGAGACTGAGAATCACTCATACGAACCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACCATTGAATCTGACCATTCAACACAACAAAACCAAGCTGACACGCTTGTTGATGCATCTTTCCCTGATAAACTTCTTTGCATGTCAGCTTGA

Coding sequence (CDS)

ATGGAAGCTCTTCTGAAGGAATACATGCAGAAGAACGACGCCTTGATGCAAACCCAGGCGTCGTCCATCAGGAATTTAGAGCTTCAGATTGGCCAGATCGCTGGAGAGCTTAAGACGAGGCAAAAAGGATCTCTTCCGAGCGACACCAAAGCCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAGTGTCAAGCTGTGACACTACGAAGTGGAAGAGCCATGAATGAACTTCCCCGCCCAGGGAAGAAAACTCTAGCTAACGAGACTGAGAATCACTCATACGAACCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACCATTGAATCTGACCATTCAACACAACAAAACCAAGCTGACACGCTTGTTGATGCATCTTTCCCTGATAAACTTCTTTGCATGTCAGCTTGA

Protein sequence

MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGKEQCQAVTLRSGRAMNELPRPGKKTLANETENHSYEPENSQPTIHLSNPTIESDHSTQQNQADTLVDASFPDKLLCMSA
Homology
[Close]
BLAST of Cla013232 vs. TrEMBL
Match: A0A0A0KMN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           ME+L +EYMQ+NDAL+Q+QA+SI+NLELQ+GQIA ++  + KG+LPS+T+ P   GSSGK
Sbjct: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129

Query: 61  EQCQAVTL 69
           E+CQAVTL
Sbjct: 130 EKCQAVTL 137

[Close]
BLAST of Cla013232 vs. TrEMBL
Match: A0A0A0KN83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-14
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           MEAL +EYMQ+NDAL+Q+QASSI+NLELQ+GQ+A ++  R KG+L  +TK P   G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 61  EQCQAVTLRSGR 73
           ++ Q VTLRS R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]
BLAST of Cla013232 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-10
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKA-PRGTGSSG 60
           ME +  ++M K +A +Q QA+SIRNLE+Q+GQ+A  L  R +G LPSDT+  PR     G
Sbjct: 246 MEDIFMQFMTKTNAFIQNQATSIRNLEIQVGQLASALNIRPQGILPSDTEPNPR---REG 305

Query: 61  KEQCQAVTLRSGRAMNELP 79
           KE C A+TL +G+  N+LP
Sbjct: 306 KEHCMAITLHNGKE-NKLP 320

[Close]
BLAST of Cla013232 vs. TrEMBL
Match: A0A061FVX6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 42/132 (31.82%), Postives = 76/132 (57.58%), Query Frame = 1 

Query: 2   EALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGKE 61
           E  L +Y+ KNDA++Q+ ++S+RNL+ Q+GQ+A  +  R + +LPSDT+        GKE
Sbjct: 212 EEFLLQYISKNDAIIQSYSASLRNLKTQVGQLANSINNRPQCALPSDTQ----VNPKGKE 271

Query: 62  QCQAVTLRSGRAMNELPRPGKKTLANETENHSYEPENSQPTIHLSNPTIESDHSTQQNQA 121
            C AVTLRSG+   E+    +K++ +  E+     ++ +  +       ++D+   +NQ 
Sbjct: 272 HCNAVTLRSGK---EVKGVNEKSIESSKEH----IDDDKAIVKKEVEVEKTDNGQAKNQG 330

Query: 122 DTLVDASFPDKL 134
           ++   A++P  L
Sbjct: 332 NS--QANYPPLL 330

[Close]
BLAST of Cla013232 vs. TrEMBL
Match: A0A061G9E9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           ME +  +YM K DA +Q+Q +SIRNLE Q+GQ+A  L  +  G+LPSD +    + + GK
Sbjct: 68  MEDMFMQYMTKIDAFIQSQTTSIRNLEAQVGQLANALNNKPHGTLPSDNEP--NSKTEGK 127

Query: 61  EQCQAVTLRSGRAMN 76
           E  + + LR+G+ ++
Sbjct: 128 EHYKVINLRNGKKVS 140

[Close]
BLAST of Cla013232 vs. NCBI nr
Match: gi|700194490|gb|KGN49667.1| (hypothetical protein Csa_5G055570 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           ME+L +EYMQ+NDAL+Q+QA+SI+NLELQ+GQIA ++  + KG+LPS+T+ P   GSSGK
Sbjct: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129

Query: 61  EQCQAVTL 69
           E+CQAVTL
Sbjct: 130 EKCQAVTL 137

[Close]
BLAST of Cla013232 vs. NCBI nr
Match: gi|700195831|gb|KGN51008.1| (hypothetical protein Csa_5G403040 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           MEAL +EYMQ+NDAL+Q+QASSI+NLELQ+GQ+A ++  R KG+L  +TK P   G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 61  EQCQAVTLRSGR 73
           ++ Q VTLRS R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]
BLAST of Cla013232 vs. NCBI nr
Match: gi|985458403|ref|XP_015387814.1| (PREDICTED: uncharacterized protein LOC107177842 [Citrus sinensis])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           +E L+K+Y+ KN+A++Q+   S+RNLE QIGQ+A  L  R +GSLPS+TK PR     GK
Sbjct: 174 LEGLIKDYIVKNEAVVQSHIVSLRNLENQIGQLATALSNRPQGSLPSNTKNPR---REGK 233

Query: 61  EQCQAVTLRSGRAM-NELPRPGKKTLANETENHSYEPENSQ 101
           E C+ + LRSG+ + N +  P ++  +N+ +  +     SQ
Sbjct: 234 EHCKVINLRSGKDVDNSVGVPKRRIESNKGQKDTQVENESQ 271

[Close]
BLAST of Cla013232 vs. NCBI nr
Match: gi|985470850|ref|XP_015381091.1| (PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           +EAL+K+Y+ KN+A++Q+ A+S+RNLE QIGQ+A  +  R +GSLPS+T+ PR     GK
Sbjct: 110 LEALIKDYIVKNEAVVQSHAASLRNLENQIGQLATAVSNRPQGSLPSNTENPR---REGK 169

Query: 61  EQCQAVTLRSGRAMN 76
           E C+ + LRSG+ ++
Sbjct: 170 EHCKVINLRSGKEVD 181

[Close]
BLAST of Cla013232 vs. NCBI nr
Match: gi|985471059|ref|XP_015381143.1| (PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis])

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-11
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDALMQTQASSIRNLELQIGQIAGELKTRQKGSLPSDTKAPRGTGSSGK 60
           +E L+K+Y+ KN+A++Q    S+RNLE QIGQ+A  L    +GSLPS+T+ PR     GK
Sbjct: 239 LEGLIKDYIVKNEAVVQNHTVSLRNLENQIGQLAAALSNIPQGSLPSNTEDPR---REGK 298

Query: 61  EQCQAVTLRSGR----------------AMNELPRPGKKTLANETENHSYEPENSQP 102
           E C+ + LRSG+                A N+ P P        T+N + E +++QP
Sbjct: 299 EHCKVINLRSGKDVHSPHTGESSQAAAFAKNDDPTPVDNKAVAPTQNMTKEKQSAQP 352

The following BLAST results are available for this feature:
BLAST of Cla013232 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMN3_CUCSA2.7e-1664.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1[more]
A0A0A0KN83_CUCSA9.4e-1458.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1[more]
A0A061EW79_THECC4.8e-1049.37Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
A0A061FVX6_THECC2.4e-0931.82Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1[more]
A0A061G9E9_THECC1.7e-0741.33Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1[more]
BLAST of Cla013232 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194490|gb|KGN49667.1|3.8e-1664.71hypothetical protein Csa_5G055570 [Cucumis sativus][more]
gi|700195831|gb|KGN51008.1|1.4e-1358.33hypothetical protein Csa_5G403040 [Cucumis sativus][more]
gi|985458403|ref|XP_015387814.1|1.3e-1141.58PREDICTED: uncharacterized protein LOC107177842 [Citrus sinensis][more]
gi|985470850|ref|XP_015381091.1|1.7e-1149.33PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis][more]
gi|985471059|ref|XP_015381143.1|2.8e-1137.61PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013232Cla013232.1mRNA