Cla013201 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013201
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Armadillo/beta-catenin-like repeat-containing protein (AHRD V1 ***- F4IYK6_ARATH)
Location	Chr5 : 12688512 .. 12689161 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGCTTAGCACTTTCCATAATTTTGACTTTAAGACTGCCCCAAGTCCTTGATAAGCTTGATCAGATCTTGAGGTACATAATCTGACTTTGAATCTTATATTCATAGTTGCAAGTGAATAGATGTAGAGGTTTCTTTCATTTGGTTTTGATGCTTTAATTACTCTGTGTTCCAGTGTATGCACCACCGTCATTTTGGGTGGAATTGACGACCAAACAGAGGAGTCCAGGTGTGGTCACCTGATGATTTGGTTTGCCTTTTTTCGTTATTGAATAATATATTTGCGTACTAGTTCCTTCTCCTAATGTTCGCTTCTTATATTAATGCTAGTGATGAATATACTAGCTCGGCCAATTGTGTGGAAACCATACCAAACAAGGAGCTTAGTAGACGACAGGTTAACCCTCTAAGTTTTAGTGGTCAAATTATTAGATGAAGCATATGTTGTAGCTCTTTCCTTATGCATTTTTTGTTCTCCTGTTAAGATCAAGATTTCAGATCCTATCAATCAGTTGTCACTAGAAGATTCTGTACGTGGAAATCTTCAGACTTGTGCCGCGCTCCATGGAGATTCCTTTAATGCAGCCATTAGTAGCATGCATCCAGCAGCATTTGCTCAACTTAAACAAGCTTTGAAGATGCCCTAA

mRNA sequence

ATGTATGGCTTAGCACTTTCCATAATTTTGACTTTAAGACTGCCCCAAGTCCTTGATAAGCTTGATCAGATCTTGAGTGTATGCACCACCGTCATTTTGGGTGGAATTGACGACCAAACAGAGGAGTCCAGTGATGAATATACTAGCTCGGCCAATTGTGTGGAAACCATACCAAACAAGGAGCTTAGTAGACGACAGATCAAGATTTCAGATCCTATCAATCAGTTGTCACTAGAAGATTCTGTACGTGGAAATCTTCAGACTTGTGCCGCGCTCCATGGAGATTCCTTTAATGCAGCCATTAGTAGCATGCATCCAGCAGCATTTGCTCAACTTAAACAAGCTTTGAAGATGCCCTAA

Coding sequence (CDS)

ATGTATGGCTTAGCACTTTCCATAATTTTGACTTTAAGACTGCCCCAAGTCCTTGATAAGCTTGATCAGATCTTGAGTGTATGCACCACCGTCATTTTGGGTGGAATTGACGACCAAACAGAGGAGTCCAGTGATGAATATACTAGCTCGGCCAATTGTGTGGAAACCATACCAAACAAGGAGCTTAGTAGACGACAGATCAAGATTTCAGATCCTATCAATCAGTTGTCACTAGAAGATTCTGTACGTGGAAATCTTCAGACTTGTGCCGCGCTCCATGGAGATTCCTTTAATGCAGCCATTAGTAGCATGCATCCAGCAGCATTTGCTCAACTTAAACAAGCTTTGAAGATGCCCTAA

Protein sequence

MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSSANCVETIPNKELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP

Homology

[Close]

BLAST of Cla013201 vs. TrEMBL
Match: A0A0A0LCL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G313210 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.3e-55
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSSANCVETIPNK 60
           MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGG+DDQTEESSDEYTS+ NC ETIP+K
Sbjct: 305 MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGLDDQTEESSDEYTSATNCAETIPSK 364

Query: 61  ELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 120
           EL RRQIK SDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP
Sbjct: 365 ELLRRQIKASDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 423

[Close]

BLAST of Cla013201 vs. TrEMBL
Match: D7SRG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0217g00040 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.0e-41
Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 1


Query: 1   MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESS--DEYTSSANCVE-TI 60
           M+GLALSIILTLRLPQVLDKLDQILSVCT+VILGG DD TEE S  D  +SS +  E  +
Sbjct: 443 MFGLALSIILTLRLPQVLDKLDQILSVCTSVILGGNDDLTEEESSGDNMSSSRSQNEGPV 502

Query: 61  PNKELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALK 120
           P+KE  RRQIK SDPINQLSLE SVR NLQTCAALHG+SFN+AI  MHPAAFAQLKQALK
Sbjct: 503 PSKEFKRRQIKFSDPINQLSLETSVRDNLQTCAALHGESFNSAIGRMHPAAFAQLKQALK 562

[Close]

BLAST of Cla013201 vs. TrEMBL
Match: A0A0D2MGA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262500 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 89/118 (75.42%), Postives = 102/118 (86.44%), Query Frame = 1


Query: 2   YGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSSANCVETIPNKE 61
           +GLALSIILTLRLPQVLDKLDQILSVCT+VILGG DD TEE S  +       + +P+KE
Sbjct: 827 FGLALSIILTLRLPQVLDKLDQILSVCTSVILGGTDDLTEEESRSHDE-----DLLPSKE 886

Query: 62  LSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 120
           L RRQIK+SDPIN+LSLE+SVR NLQTCAALHG+SFN+AI+ +HPAAFAQLKQALKMP
Sbjct: 887 LRRRQIKVSDPINRLSLENSVRDNLQTCAALHGESFNSAIAKIHPAAFAQLKQALKMP 939

[Close]

BLAST of Cla013201 vs. TrEMBL
Match: A0A061ES05_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_021656 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-40
Identity = 95/123 (77.24%), Postives = 106/123 (86.18%), Query Frame = 1


Query: 1    MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEE--SSDEYTSSANCVE-TI 60
            ++GLALSIILTLRLPQVLDKLDQILSVCT+VILGG DD TEE  S D  +SS +  E ++
Sbjct: 938  IFGLALSIILTLRLPQVLDKLDQILSVCTSVILGGTDDLTEEESSGDNMSSSRSHGEGSL 997

Query: 61   PNKELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGD-SFNAAISSMHPAAFAQLKQAL 120
            P+KEL RRQIK SDPINQLSLE+SVR NLQTCAALHGD SFN+AI  MHP+AFAQLKQAL
Sbjct: 998  PSKELRRRQIKFSDPINQLSLENSVRDNLQTCAALHGDPSFNSAIGRMHPSAFAQLKQAL 1057

[Close]

BLAST of Cla013201 vs. TrEMBL
Match: A0A0D2QJI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262500 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-40
Identity = 90/121 (74.38%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 2   YGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSS---ANCVETIP 61
           +GLALSIILTLRLPQVLDKLDQILSVCT+VILGG DD TEE S     S   ++  + +P
Sbjct: 827 FGLALSIILTLRLPQVLDKLDQILSVCTSVILGGTDDLTEEESSGDNMSYGRSHDEDLLP 886

Query: 62  NKELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKM 120
           +KEL RRQIK+SDPIN+LSLE+SVR NLQTCAALHG+SFN+AI+ +HPAAFAQLKQALKM
Sbjct: 887 SKELRRRQIKVSDPINRLSLENSVRDNLQTCAALHGESFNSAIAKIHPAAFAQLKQALKM 946

[Close]

BLAST of Cla013201 vs. NCBI nr
Match: gi|659114414|ref|XP_008457041.1| (PREDICTED: importin-11 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1    MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSSANCVETIPNK 60
            MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGG+DDQTEESSDEYTSS NC ETIP+K
Sbjct: 893  MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGVDDQTEESSDEYTSSTNCAETIPSK 952

Query: 61   ELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 120
            EL RRQIK SDPINQLSLEDSVRGNLQTCAALHGDSFN+AISSMHPAAFAQLKQALKMP
Sbjct: 953  ELRRRQIKASDPINQLSLEDSVRGNLQTCAALHGDSFNSAISSMHPAAFAQLKQALKMP 1011

[Close]

BLAST of Cla013201 vs. NCBI nr
Match: gi|778680809|ref|XP_011651399.1| (PREDICTED: importin-11 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 6.1e-55
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1    MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSSANCVETIPNK 60
            MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGG+DDQTEESSDEYTS+ NC ETIP+K
Sbjct: 893  MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGLDDQTEESSDEYTSATNCAETIPSK 952

Query: 61   ELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 120
            EL RRQIK SDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP
Sbjct: 953  ELLRRQIKASDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 1011

[Close]

BLAST of Cla013201 vs. NCBI nr
Match: gi|700202673|gb|KGN57806.1| (hypothetical protein Csa_3G313210 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 6.1e-55
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESSDEYTSSANCVETIPNK 60
           MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGG+DDQTEESSDEYTS+ NC ETIP+K
Sbjct: 305 MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGLDDQTEESSDEYTSATNCAETIPSK 364

Query: 61  ELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 120
           EL RRQIK SDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP
Sbjct: 365 ELLRRQIKASDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALKMP 423

[Close]

BLAST of Cla013201 vs. NCBI nr
Match: gi|296081118|emb|CBI18250.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 8.6e-41
Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 1


Query: 1   MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESS--DEYTSSANCVE-TI 60
           M+GLALSIILTLRLPQVLDKLDQILSVCT+VILGG DD TEE S  D  +SS +  E  +
Sbjct: 443 MFGLALSIILTLRLPQVLDKLDQILSVCTSVILGGNDDLTEEESSGDNMSSSRSQNEGPV 502

Query: 61  PNKELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALK 120
           P+KE  RRQIK SDPINQLSLE SVR NLQTCAALHG+SFN+AI  MHPAAFAQLKQALK
Sbjct: 503 PSKEFKRRQIKFSDPINQLSLETSVRDNLQTCAALHGESFNSAIGRMHPAAFAQLKQALK 562

[Close]

BLAST of Cla013201 vs. NCBI nr
Match: gi|359481171|ref|XP_002262626.2| (PREDICTED: importin-11 isoform X1 [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 8.6e-41
Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 1


Query: 1    MYGLALSIILTLRLPQVLDKLDQILSVCTTVILGGIDDQTEESS--DEYTSSANCVE-TI 60
            M+GLALSIILTLRLPQVLDKLDQILSVCT+VILGG DD TEE S  D  +SS +  E  +
Sbjct: 890  MFGLALSIILTLRLPQVLDKLDQILSVCTSVILGGNDDLTEEESSGDNMSSSRSQNEGPV 949

Query: 61   PNKELSRRQIKISDPINQLSLEDSVRGNLQTCAALHGDSFNAAISSMHPAAFAQLKQALK 120
            P+KE  RRQIK SDPINQLSLE SVR NLQTCAALHG+SFN+AI  MHPAAFAQLKQALK
Sbjct: 950  PSKEFKRRQIKFSDPINQLSLETSVRDNLQTCAALHGESFNSAIGRMHPAAFAQLKQALK 1009

The following BLAST results are available for this feature:

BLAST of Cla013201 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCL3_CUCSA	4.3e-55	94.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G313210 PE=4 SV=1	[more]
D7SRG9_VITVI	6.0e-41	77.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0217g00040 PE=4 SV=...	[more]
A0A0D2MGA6_GOSRA	2.3e-40	75.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262500 PE=4 SV=1	[more]
A0A061ES05_THECC	3.9e-40	77.24	ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_021656 PE=4 S...	[more]
A0A0D2QJI7_GOSRA	3.9e-40	74.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262500 PE=4 SV=1	[more]

BLAST of Cla013201 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114414\|ref\|XP_008457041.1\|	3.6e-55	94.12	PREDICTED: importin-11 [Cucumis melo]	[more]
gi\|778680809\|ref\|XP_011651399.1\|	6.1e-55	94.12	PREDICTED: importin-11 [Cucumis sativus]	[more]
gi\|700202673\|gb\|KGN57806.1\|	6.1e-55	94.12	hypothetical protein Csa_3G313210 [Cucumis sativus]	[more]
gi\|296081118\|emb\|CBI18250.3\|	8.6e-41	77.87	unnamed protein product [Vitis vinifera]	[more]
gi\|359481171\|ref\|XP_002262626.2\|	8.6e-41	77.87	PREDICTED: importin-11 isoform X1 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008536	Ran GTPase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013201	Cla013201.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013201	Csa3G313210	Cucumber (Chinese Long) v2	cuwmB245
Cla013201	ClCG05G011310	Watermelon (Charleston Gray)	wcgwmB286
Cla013201	CSPI03G21400	Wild cucumber (PI 183967)	cpiwmB245

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013201	Cucurbita maxima (Rimu)	cmawmB243
Cla013201	Cucurbita maxima (Rimu)	cmawmB434
Cla013201	Cucurbita moschata (Rifu)	cmowmB232
Cla013201	Cucurbita moschata (Rifu)	cmowmB427
Cla013201	Melon (DHL92) v3.5.1	mewmB461
Cla013201	Cucurbita pepo (Zucchini)	cpewmB568
Cla013201	Cucurbita pepo (Zucchini)	cpewmB614
Cla013201	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013201	Cucumber (Gy14) v2	cgybwmB232
Cla013201	Melon (DHL92) v3.6.1	medwmB448
Cla013201	Silver-seed gourd	carwmB0508
Cla013201	Silver-seed gourd	carwmB0760
Cla013201	Cucumber (Chinese Long) v3	cucwmB254
Cla013201	Watermelon (97103) v2	wmwmbB206
Cla013201	Wax gourd	wgowmB215
Cla013201	Cucumber (Gy14) v1	cgywmB677