Cla013200 (gene) Watermelon (97103) v1

Overview
NameCla013200
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 12686228 .. 12687220 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCATCACCATTCGATTTATTCACATAGATCGGAAAGTTTTCTCCCTCTCCCCAATTACCCCAACTGGAGGAAAACACTTCAAACTTTCTGAGCAAACCAAATCCGACATTCGATCTATCTTTATCACCTGGAAGTCTCTTGATTGGCTTGCATGTTTTTTCAATTCTCTTCACAAAGCACCTTGCAACCAAAAGTTCTTTAGAAAATTGAAAGATGAAGGAGATACCCTTTGGCTTGAAAAGCACAGTAACAAGCATGGCTTTTTTGCGGAGCTCACATTATTGGAACAATCTGGTTGCCGGTCAAACATCCTCATCCCAGCTATGGAAGACGAAAGGGGTTGGTTCTCTTTCTTTTCACTAGTATCTGAATACCCCATCAAGACCTTGCATTCCAGCAAAACTCTATCTTACAGTGAAGCAGTTAAATTGAACAATCCTCCCCAAATCCAACAACACAACACTGGCCCTCCTCGACAGCTTTGCGATGATCCAATTCCTCACACCAATTGGATGGCTATGGTGATTATCCAACAATACATGCTAAAAGACTCTTGGTCGGAGATACGAGCAACTTTACAAGCAATAATCTCACCTAGATGCTCCATCAACCCTATATCGGATGATAAAGCTCTTCTTCATGTTTATGATTATGATATGGCGAAGCAACTTTGCTCAACACCTGATTGGACCACTATTGATCAAATAAAGCTCAAATTTCTCTCTATATCTCAGCCATCTTCATTCCAAAATCAGATGATTACTTCTTATGGAGGCTGGATTGATCTTCATCATCTGTCGGTGGGTTTTGGACAGAAGACATATTCAAGTTTATTGGAGATTTTTTTTGGAGGCTACTTTCATTCATCTAATCAGATTATAGGAGGTTTACTCCTCTCCTTTGCTCGCATCAAAATCAAAGAAAACCAACGTGGTTTCATGTCATACCCCCTCCTAGGTACCCTCTTAACCCTGGTTTATGTATGA

mRNA sequence

ATGTCCACCATCACCATTCGATTTATTCACATAGATCGGAAAGTTTTCTCCCTCTCCCCAATTACCCCAACTGGAGGAAAACACTTCAAACTTTCTGAGCAAACCAAATCCGACATTCGATCTATCTTTATCACCTGGAAGTCTCTTGATTGGCTTGCATGTTTTTTCAATTCTCTTCACAAAGCACCTTGCAACCAAAAGTTCTTTAGAAAATTGAAAGATGAAGGAGATACCCTTTGGCTTGAAAAGCACAGTAACAAGCATGGCTTTTTTGCGGAGCTCACATTATTGGAACAATCTGGTTGCCGGTCAAACATCCTCATCCCAGCTATGGAAGACGAAAGGGGTTGGTTCTCTTTCTTTTCACTAGTATCTGAATACCCCATCAAGACCTTGCATTCCAGCAAAACTCTATCTTACAGTGAAGCAGTTAAATTGAACAATCCTCCCCAAATCCAACAACACAACACTGGCCCTCCTCGACAGCTTTGCGATGATCCAATTCCTCACACCAATTGGATGGCTATGGTGATTATCCAACAATACATGCTAAAAGACTCTTGGTCGGAGATACGAGCAACTTTACAAGCAATAATCTCACCTAGATGCTCCATCAACCCTATATCGGATGATAAAGCTCTTCTTCATGTTTATGATTATGATATGGCGAAGCAACTTTGCTCAACACCTGATTGGACCACTATTGATCAAATAAAGCTCAAATTTCTCTCTATATCTCAGCCATCTTCATTCCAAAATCAGATGATTACTTCTTATGGAGGCTGGATTGATCTTCATCATCTGTCGGTGGGTTTTGGACAGAAGACATATTCAAGTTTATTGGAGATTTTTTTTGGAGGCTACTTTCATTCATCTAATCAGATTATAGGAGGTTTACTCCTCTCCTTTGCTCGCATCAAAATCAAAGAAAACCAACGTGGTTTCATGTCATACCCCCTCCTAGGTACCCTCTTAACCCTGGTTTATGTATGA

Coding sequence (CDS)

ATGTCCACCATCACCATTCGATTTATTCACATAGATCGGAAAGTTTTCTCCCTCTCCCCAATTACCCCAACTGGAGGAAAACACTTCAAACTTTCTGAGCAAACCAAATCCGACATTCGATCTATCTTTATCACCTGGAAGTCTCTTGATTGGCTTGCATGTTTTTTCAATTCTCTTCACAAAGCACCTTGCAACCAAAAGTTCTTTAGAAAATTGAAAGATGAAGGAGATACCCTTTGGCTTGAAAAGCACAGTAACAAGCATGGCTTTTTTGCGGAGCTCACATTATTGGAACAATCTGGTTGCCGGTCAAACATCCTCATCCCAGCTATGGAAGACGAAAGGGGTTGGTTCTCTTTCTTTTCACTAGTATCTGAATACCCCATCAAGACCTTGCATTCCAGCAAAACTCTATCTTACAGTGAAGCAGTTAAATTGAACAATCCTCCCCAAATCCAACAACACAACACTGGCCCTCCTCGACAGCTTTGCGATGATCCAATTCCTCACACCAATTGGATGGCTATGGTGATTATCCAACAATACATGCTAAAAGACTCTTGGTCGGAGATACGAGCAACTTTACAAGCAATAATCTCACCTAGATGCTCCATCAACCCTATATCGGATGATAAAGCTCTTCTTCATGTTTATGATTATGATATGGCGAAGCAACTTTGCTCAACACCTGATTGGACCACTATTGATCAAATAAAGCTCAAATTTCTCTCTATATCTCAGCCATCTTCATTCCAAAATCAGATGATTACTTCTTATGGAGGCTGGATTGATCTTCATCATCTGTCGGTGGGTTTTGGACAGAAGACATATTCAAGTTTATTGGAGATTTTTTTTGGAGGCTACTTTCATTCATCTAATCAGATTATAGGAGGTTTACTCCTCTCCTTTGCTCGCATCAAAATCAAAGAAAACCAACGTGGTTTCATGTCATACCCCCTCCTAGGTACCCTCTTAACCCTGGTTTATGTATGA

Protein sequence

MSTITIRFIHIDRKVFSLSPITPTGGKHFKLSEQTKSDIRSIFITWKSLDWLACFFNSLHKAPCNQKFFRKLKDEGDTLWLEKHSNKHGFFAELTLLEQSGCRSNILIPAMEDERGWFSFFSLVSEYPIKTLHSSKTLSYSEAVKLNNPPQIQQHNTGPPRQLCDDPIPHTNWMAMVIIQQYMLKDSWSEIRATLQAIISPRCSINPISDDKALLHVYDYDMAKQLCSTPDWTTIDQIKLKFLSISQPSSFQNQMITSYGGWIDLHHLSVGFGQKTYSSLLEIFFGGYFHSSNQIIGGLLLSFARIKIKENQRGFMSYPLLGTLLTLVYV
Homology
[Close]
BLAST of Cla013200 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 68/255 (26.67%), Postives = 109/255 (42.75%), Query Frame = 1 

Query: 41  SIFITWKSLDWLACFFNSLHKAPCNQKFFRKLKDEGD-TLWLEKHSNKHGFFAELTLLEQ 100
           SI  T +SLDWL   FN+L K P   +FF K K  GD  LW++K  N+ G+ AE   ++ 
Sbjct: 8   SIIATLESLDWLKTTFNTLLKMPRTTRFFLK-KGFGDYCLWVQKTHNRKGYLAEFFRVDD 67

Query: 101 SGCRSNILIPAMEDERGWFSF---FSLVSEYPIK-------TLHSSKTLSYSEAVKLNNP 160
            G +  IL+    D++GW  F    SL  E P K       ++   K  SYS +   +NP
Sbjct: 68  KGRKCCILVIEGRDKQGWAQFTEVLSLRKEAPQKRSPQTNPSVRGPKAYSYSSSTDFDNP 127

Query: 161 PQI----------------QQHNTGPPRQLCDDPIPHT----NWMAMVIIQQYMLKDSWS 220
                                +N     +  +D         +W    +I +    D W 
Sbjct: 128 RHTYVEVLTKGSLSNSDSPNSYNADTKEKKKEDTTARKFETFDWSKTEVITKRCFHDDWK 187

Query: 221 EIRATLQAIISP-RCSINPISDDKALLHVYDYDMAKQLCSTPDWTTIDQIKLKFLSISQP 264
           +I   LQ  +     +      +KA++ + + +M   LC    WTTI +  +KF + +  
Sbjct: 188 KIMEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNIS 247

[Close]
BLAST of Cla013200 vs. TrEMBL
Match: A0A0A0LKM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078060 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 186 DSWSEIRATLQAIISPRCSINPISDDKALLHVYDYDMAKQLCSTPDWTTIDQIKLKFLSI 245
           +SW EI   +Q+  S RC+INP  D+K L+HVYD  +A+ L +  DW +I +  L FL  
Sbjct: 27  NSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYDTTVAQFLYNHEDWESIRKFNLHFLDA 86

Query: 246 SQPSSFQNQMITSYGGWIDLHHL 269
           S  SS+  Q   SYGGWID+  L
Sbjct: 87  SLISSYLCQQTASYGGWIDVFDL 109

[Close]
BLAST of Cla013200 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 6.5e-14
Identity = 68/255 (26.67%), Postives = 109/255 (42.75%), Query Frame = 1 

Query: 41  SIFITWKSLDWLACFFNSLHKAPCNQKFFRKLKDEGD-TLWLEKHSNKHGFFAELTLLEQ 100
           SI  T +SLDWL   FN+L K P   +FF K K  GD  LW++K  N+ G+ AE   ++ 
Sbjct: 8   SIIATLESLDWLKTTFNTLLKMPRTTRFFLK-KGFGDYCLWVQKTHNRKGYLAEFFRVDD 67

Query: 101 SGCRSNILIPAMEDERGWFSF---FSLVSEYPIK-------TLHSSKTLSYSEAVKLNNP 160
            G +  IL+    D++GW  F    SL  E P K       ++   K  SYS +   +NP
Sbjct: 68  KGRKCCILVIEGRDKQGWAQFTEVLSLRKEAPQKRSPQTNPSVRGPKAYSYSSSTDFDNP 127

Query: 161 PQI----------------QQHNTGPPRQLCDDPIPHT----NWMAMVIIQQYMLKDSWS 220
                                +N     +  +D         +W    +I +    D W 
Sbjct: 128 RHTYVEVLTKGSLSNSDSPNSYNADTKEKKKEDTTARKFETFDWSKTEVITKRCFHDDWK 187

Query: 221 EIRATLQAIISP-RCSINPISDDKALLHVYDYDMAKQLCSTPDWTTIDQIKLKFLSISQP 264
           +I   LQ  +     +      +KA++ + + +M   LC    WTTI +  +KF + +  
Sbjct: 188 KIMEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNIS 247

[Close]
BLAST of Cla013200 vs. NCBI nr
Match: gi|700206183|gb|KGN61302.1| (hypothetical protein Csa_2G078060 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 186 DSWSEIRATLQAIISPRCSINPISDDKALLHVYDYDMAKQLCSTPDWTTIDQIKLKFLSI 245
           +SW EI   +Q+  S RC+INP  D+K L+HVYD  +A+ L +  DW +I +  L FL  
Sbjct: 27  NSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYDTTVAQFLYNHEDWESIRKFNLHFLDA 86

Query: 246 SQPSSFQNQMITSYGGWIDLHHL 269
           S  SS+  Q   SYGGWID+  L
Sbjct: 87  SLISSYLCQQTASYGGWIDVFDL 109

The following BLAST results are available for this feature:
BLAST of Cla013200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNC5_CUCSA4.5e-1426.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1[more]
A0A0A0LKM1_CUCSA2.8e-1145.78Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078060 PE=4 SV=1[more]
BLAST of Cla013200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195958|gb|KGN51135.1|6.5e-1426.67hypothetical protein Csa_5G465580 [Cucumis sativus][more]
gi|700206183|gb|KGN61302.1|4.0e-1145.78hypothetical protein Csa_2G078060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013200Cla013200.1mRNA