Cla013196 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013196
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 12661529 .. 12662272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATCAAAAACTTCCAGACCCCTGGCATTCCGTCTAGGGATTTCCTTCCATCAGGGGCGCCCACTGGCTTCGAAACTATCCAAAAAAACCGAAAAGACTCAAAAGTTCCTTTGTCATTCACAGAAGAAGCCGAAAAGTCTCCCCCAATTAGCATGAAGTCCAATCGGGAAGAGTTTCCCTTCCAGACATTGCCACCCCCTCTTCAGCTCCCTCGAGCTCGCGTGTTCACCCCTCTTCAGCAGTCTCCAGCACACAAGGTTTCCCCGATCAAGAGCCCTTTCTTCCCAGCCGTTAGAAGGAGATCAGACCTCTTCAAACCCTTCCTAAAACACTTCAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTTAGCTTTGACAAATCCAGATCTACTTGAGGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAATCTGGTAACAGGTCAGCACTCCCCCTCTCTTCTTCGCAAATATTTCACCAATCAAAAATTCTAATCCCAGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGTTCTTACCGGCCCAAGCCAAATAAGATTCAAGACTTAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTGAATGAGCCAGAAGAAGATGAGAACCACTTAAGTTTGGTTTTGGATGAATCCATCGGTGAAGATCTAAATACTTTTCCAGACTAA

mRNA sequence

ATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATCAAAAACTTCCAGACCCCTGGCATTCCGTCTAGGGATTTCCTTCCATCAGGGGCGCCCACTGGCTTCGAAACTATCCAAAAAAACCGAAAAGACTCAAAAGTTCCTTTGTCATTCACAGAAGAAGCCGAAAAGTCTCCCCCAATTAGCATGAAGTCCAATCGGGAAGAGTTTCCCTTCCAGACATTGCCACCCCCTCTTCAGCTCCCTCGAGCTCGCGTGTTCACCCCTCTTCAGCAGTCTCCAGCACACAAGGTTTCCCCGATCAAGAGCCCTTTCTTCCCAGCCGTTAGAAGGAGATCAGACCTCTTCAAACCCTTCCTAAAACACTTCAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTTAGCTTTGACAAATCCAGATCTACTTGAGGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAATCTGGTAACAGGTCAGCACTCCCCCTCTCTTCTTCGCAAATATTTCACCAATCAAAAATTCTAATCCCAGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGTTCTTACCGGCCCAAGCCAAATAAGATTCAAGACTTAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTGAATGAGCCAGAAGAAGATGAGAACCACTTAAGTTTGGTTTTGGATGAATCCATCGGTGAAGATCTAAATACTTTTCCAGACTAA

Coding sequence (CDS)

ATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATCAAAAACTTCCAGACCCCTGGCATTCCGTCTAGGGATTTCCTTCCATCAGGGGCGCCCACTGGCTTCGAAACTATCCAAAAAAACCGAAAAGACTCAAAAGTTCCTTTGTCATTCACAGAAGAAGCCGAAAAGTCTCCCCCAATTAGCATGAAGTCCAATCGGGAAGAGTTTCCCTTCCAGACATTGCCACCCCCTCTTCAGCTCCCTCGAGCTCGCGTGTTCACCCCTCTTCAGCAGTCTCCAGCACACAAGGTTTCCCCGATCAAGAGCCCTTTCTTCCCAGCCGTTAGAAGGAGATCAGACCTCTTCAAACCCTTCCTAAAACACTTCAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTTAGCTTTGACAAATCCAGATCTACTTGAGGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAATCTGGTAACAGGTCAGCACTCCCCCTCTCTTCTTCGCAAATATTTCACCAATCAAAAATTCTAATCCCAGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGTTCTTACCGGCCCAAGCCAAATAAGATTCAAGACTTAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTGAATGAGCCAGAAGAAGATGAGAACCACTTAAGTTTGGTTTTGGATGAATCCATCGGTGAAGATCTAAATACTTTTCCAGACTAA

Protein sequence

MKKEKRKERVFGRINENIKNFQTPGIPSRDFLPSGAPTGFETIQKNRKDSKVPLSFTEEAEKSPPISMKSNREEFPFQTLPPPLQLPRARVFTPLQQSPAHKVSPIKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNPDLLEVSCANSQVPQQSGNRSALPLSSSQIFHQSKILIPGSNILFLRGSPSSYRPKPNKIQDLEEESLISISSDELNEPEEDENHLSLVLDESIGEDLNTFPD

Homology

[Close]

BLAST of Cla013196 vs. TrEMBL
Match: A0A0A0KHK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408260 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 48/130 (36.92%), Postives = 63/130 (48.46%), Query Frame = 1


Query: 49  DSKVPLSFTEEAEKSPPISMKSNREEFPFQTLPPPLQLPRARVFT---PLQQSPAHKVSP 108
           DS   L  + ++     I+  S++E      L PP Q+      +   P   S    +  
Sbjct: 58  DSNTSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKK 117

Query: 109 IKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNPDLLEVSCANSQVPQQSGNRS 168
            K       +R S+LFK F KHF+R KTSF N W  +TNPD+LE SC   QVP    NRS
Sbjct: 118 NKCNSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRS 177

Query: 169 A-LPLSSSQI 175
           A LPL +  I
Sbjct: 178 ASLPLLNKPI 187

[Close]

BLAST of Cla013196 vs. NCBI nr
Match: gi|700192663|gb|KGN47867.1| (hypothetical protein Csa_6G408260 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 48/130 (36.92%), Postives = 63/130 (48.46%), Query Frame = 1


Query: 49  DSKVPLSFTEEAEKSPPISMKSNREEFPFQTLPPPLQLPRARVFT---PLQQSPAHKVSP 108
           DS   L  + ++     I+  S++E      L PP Q+      +   P   S    +  
Sbjct: 58  DSNTSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKK 117

Query: 109 IKSPFFPAVRRRSDLFKPFLKHFSRGKTSFLNLWLALTNPDLLEVSCANSQVPQQSGNRS 168
            K       +R S+LFK F KHF+R KTSF N W  +TNPD+LE SC   QVP    NRS
Sbjct: 118 NKCNSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRS 177

Query: 169 A-LPLSSSQI 175
           A LPL +  I
Sbjct: 178 ASLPLLNKPI 187

The following BLAST results are available for this feature:

BLAST of Cla013196 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHK4_CUCSA	8.7e-10	36.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408260 PE=4 SV=1	[more]

BLAST of Cla013196 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192663\|gb\|KGN47867.1\|	1.2e-09	36.92	hypothetical protein Csa_6G408260 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013196	Cla013196.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013196	ClCG05G011290	Watermelon (Charleston Gray)	wcgwmB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013196	Silver-seed gourd	carwmB0508
Cla013196	Silver-seed gourd	carwmB0760
Cla013196	Cucumber (Chinese Long) v3	cucwmB254
Cla013196	Watermelon (97103) v2	wmwmbB206
Cla013196	Wax gourd	wgowmB215
Cla013196	Cucumber (Gy14) v1	cgywmB677
Cla013196	Cucurbita maxima (Rimu)	cmawmB243
Cla013196	Cucurbita maxima (Rimu)	cmawmB434
Cla013196	Cucurbita moschata (Rifu)	cmowmB232
Cla013196	Cucurbita moschata (Rifu)	cmowmB427
Cla013196	Melon (DHL92) v3.5.1	mewmB461
Cla013196	Cucumber (Chinese Long) v2	cuwmB245
Cla013196	Cucurbita pepo (Zucchini)	cpewmB568
Cla013196	Cucurbita pepo (Zucchini)	cpewmB614
Cla013196	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013196	Cucumber (Gy14) v2	cgybwmB232
Cla013196	Melon (DHL92) v3.6.1	medwmB448