Cla013176 (gene) Watermelon (97103) v1

Overview
NameCla013176
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 12107220 .. 12107435 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAGAAACAATTAGAGGAAAAGATAGAGGTGAATGAAAAGAATATGCCAAGCTTGAAAGAACTTTTGCTCGGGCTCTGTAAAAATATCGAGAAGTTAACCGATGAAGTTCAAGAAAGTACTCTGAGTAGGAAAATGGGAGAGTCGACGACATCGGAGGGATCGCAACTGAAAATGAAAGGTAAGATGGTGGAAGAAGCGGAGTTTGAGTAA

mRNA sequence

ATGGCACAGAAACAATTAGAGGAAAAGATAGAGGTGAATGAAAAGAATATGCCAAGCTTGAAAGAACTTTTGCTCGGGCTCTGTAAAAATATCGAGAAGTTAACCGATGAAGTTCAAGAAAGTACTCTGAGTAGGAAAATGGGAGAGTCGACGACATCGGAGGGATCGCAACTGAAAATGAAAGGTAAGATGGTGGAAGAAGCGGAGTTTGAGTAA

Coding sequence (CDS)

ATGGCACAGAAACAATTAGAGGAAAAGATAGAGGTGAATGAAAAGAATATGCCAAGCTTGAAAGAACTTTTGCTCGGGCTCTGTAAAAATATCGAGAAGTTAACCGATGAAGTTCAAGAAAGTACTCTGAGTAGGAAAATGGGAGAGTCGACGACATCGGAGGGATCGCAACTGAAAATGAAAGGTAAGATGGTGGAAGAAGCGGAGTTTGAGTAA

Protein sequence

MAQKQLEEKIEVNEKNMPSLKELLLGLCKNIEKLTDEVQESTLSRKMGESTTSEGSQLKMKGKMVEEAEFE
Homology
[Close]
BLAST of Cla013176 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 32/66 (48.48%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 1  MAQKQLEEKIEVNEKNMPSLKELLLGLCKNIEKLTDEVQESTLSRKMGESTTSEGSQLKM 60
          MAQ+Q+EE++E  +K + SLK+++L + KN+++L DE++E+   +K  ES TS+GS +KM
Sbjct: 1  MAQRQMEERLEGMKKEVLSLKKMMLEMKKNMDRLADELRENQSYKKKEESDTSDGSIMKM 60

Query: 61 KGKMVE 67
          KGKM E
Sbjct: 61 KGKMEE 66

[Close]
BLAST of Cla013176 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-06
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1 

Query: 1  MAQKQLEEKIEVNEKNMPSLKELLLGLCKNIEKLTDEVQESTLSRKMGESTTSEGSQLKM 60
          MAQ+Q+EE++E  EK +  LKE++  + K +E+L +E++ES   +K  ES T +G  +K+
Sbjct: 1  MAQRQVEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKL 60

Query: 61 KGKMVE 67
          KGKM E
Sbjct: 61 KGKMEE 66

The following BLAST results are available for this feature:
BLAST of Cla013176 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093726|ref|XP_008447685.1|2.6e-0848.48PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|659112485|ref|XP_008456244.1|4.1e-0643.94PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013176Cla013176.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor