Cla013141 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013141
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 11499475 .. 11500684 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAAAAAGTTGCAAGGCAGATGGGTTTTTCTTCTGTATTTGGCATGAATTAGGCTCATTCTATGTGGAAGACTTGGAAGTCAACAAGTTACTCATCCTCTCGAATTCACAACTCAGGTGGTTCGTTGATAATATTCTAGATTTGATTAAGGAATCCACCTCACAATTCTTTGAGAGAAGCGGTCGAGATGGCTTCAGTTCAACAAAACTATCCAAGTTCCTTAGCTCCTCAGGGTGGATTATGAGATGTGTTGTTTGGCCATCCTCCGGAGGAAGATATTTTATTCATATACCCTCAGGAGAAACAATGCAAGGTTGGTACTCTTTTGTAGTAATGCTCTTAGATTTCCAAAAAAAATTTCAAAGCCTCTTCAAAACCTTGCTTTCCGAGAAGGGAAATTTCATCTTCAGCCTTGCCGAACCAAAATGAAGGTTATGGGGACCTATTAAAGTCATCAAAAATTCAGCAAAGGCCGATCTTCCAGTCGAAATTCAGACGCCTGAAACCAAGCTTTACCCAAGTACCCGAAAATCAATGTAAGTCTCAACATTGCGTTTTAAAGAATTTTGATGTCAAACAAGAAGACTTTAGCAAGTTGTGGTTAGTTACTAAATTGTTCAAGTTCAATGATTGGGCGGAAATAGCGAAAACGTTAAAAATCTACTTTAGTTCAAAGATCATTATCAATCCCTTGTTTGCGGAAAATGCCTTAATAAAGTTGGACCAAGGATCATTAGAGGATTTAATAGCAAATCCGGGTAGATGGATGTCTTGTGGTTCATTTCACCTGAAATTTGAGAAGTGGAACAAACTAGTTCACAGTCGGCCATTGTACTCAAAAGGTTATGAAGGTTGGATTTCCATTAAGAATCTTCTGTTAGATTACTGGTATAGACAAACTTTTGAAGCCATCGGAGCATATTTTGGAGGGTTAGAGGACATTGCATCAGATACTTTGAACCTTATTAATGTCTCTGAAGCCAAGATCCAAGTTAAAGAAAATTTATGTGGTTTCATCCCATCCACCATAGAGATTTTAGATGAGAAACATGGATCTATCTTTTTGAATTTTGGAGATATTGAGTTCATTGAACCTCCCTCAAAAGTTAAAGATGAATTATTTGTCAAGGATTTTTCAAATCCAATTGATTTAGTCAGGGTAAATCAAGTGTTAAAGGAGGAAGGTTTCAGGTTGAAGATTTAG

mRNA sequence

ATGGAAGTAAAAAGTTGCAAGGCAGATGGGTTTTTCTTCTGTATTTGGCATGAATTAGGCTCATTCTATGTGGAAGACTTGGAAGTCAACAAGTTACTCATCCTCTCGAATTCACAACTCAGGTGGTTCGTTGATAATATTCTAGATTTGATTAAGGAATCCACCTCACAATTCTTTGAGAGAAGCGGTCGAGATGGCTTCAGTTCAACAAAACTATCCAAGTTCCTTAGCTCCTCAGGGTGGATTATGAGATGTGTTGTTTGGCCATCCTCCGGAGGAAGATATTTTATTCATATACCCTCAGGAGAAACAATGCAAGCCTTGCCGAACCAAAATGAAGGTTATGGGGACCTATTAAAGTCATCAAAAATTCAGCAAAGGCCGATCTTCCAGTCGAAATTCAGACGCCTGAAACCAAGCTTTACCCAAGTACCCGAAAATCAATGTAAGTCTCAACATTGCGTTTTAAAGAATTTTGATGTCAAACAAGAAGACTTTAGCAAGTTGTGGTTAGTTACTAAATTGTTCAAGTTCAATGATTGGGCGGAAATAGCGAAAACGTTAAAAATCTACTTTAGTTCAAAGATCATTATCAATCCCTTGTTTGCGGAAAATGCCTTAATAAAGTTGGACCAAGGATCATTAGAGGATTTAATAGCAAATCCGGGTAGATGGATGTCTTGTGGTTCATTTCACCTGAAATTTGAGAAGTGGAACAAACTAGTTCACAGTCGGCCATTGTACTCAAAAGGTTATGAAGGTTGGATTTCCATTAAGAATCTTCTGTTAGATTACTGGTATAGACAAACTTTTGAAGCCATCGGAGCATATTTTGGAGGGTTAGAGGACATTGCATCAGATACTTTGAACCTTATTAATGTCTCTGAAGCCAAGATCCAAGTTAAAGAAAATTTATGTGGTTTCATCCCATCCACCATAGAGATTTTAGATGAGAAACATGGATCTATCTTTTTGAATTTTGGAGATATTGAGTTCATTGAACCTCCCTCAAAAGTTAAAGATGAATTATTTGTCAAGGATTTTTCAAATCCAATTGATTTAGTCAGGGTAAATCAAGTGTTAAAGGAGGAAGGTTTCAGGTTGAAGATTTAG

Coding sequence (CDS)

ATGGAAGTAAAAAGTTGCAAGGCAGATGGGTTTTTCTTCTGTATTTGGCATGAATTAGGCTCATTCTATGTGGAAGACTTGGAAGTCAACAAGTTACTCATCCTCTCGAATTCACAACTCAGGTGGTTCGTTGATAATATTCTAGATTTGATTAAGGAATCCACCTCACAATTCTTTGAGAGAAGCGGTCGAGATGGCTTCAGTTCAACAAAACTATCCAAGTTCCTTAGCTCCTCAGGGTGGATTATGAGATGTGTTGTTTGGCCATCCTCCGGAGGAAGATATTTTATTCATATACCCTCAGGAGAAACAATGCAAGCCTTGCCGAACCAAAATGAAGGTTATGGGGACCTATTAAAGTCATCAAAAATTCAGCAAAGGCCGATCTTCCAGTCGAAATTCAGACGCCTGAAACCAAGCTTTACCCAAGTACCCGAAAATCAATGTAAGTCTCAACATTGCGTTTTAAAGAATTTTGATGTCAAACAAGAAGACTTTAGCAAGTTGTGGTTAGTTACTAAATTGTTCAAGTTCAATGATTGGGCGGAAATAGCGAAAACGTTAAAAATCTACTTTAGTTCAAAGATCATTATCAATCCCTTGTTTGCGGAAAATGCCTTAATAAAGTTGGACCAAGGATCATTAGAGGATTTAATAGCAAATCCGGGTAGATGGATGTCTTGTGGTTCATTTCACCTGAAATTTGAGAAGTGGAACAAACTAGTTCACAGTCGGCCATTGTACTCAAAAGGTTATGAAGGTTGGATTTCCATTAAGAATCTTCTGTTAGATTACTGGTATAGACAAACTTTTGAAGCCATCGGAGCATATTTTGGAGGGTTAGAGGACATTGCATCAGATACTTTGAACCTTATTAATGTCTCTGAAGCCAAGATCCAAGTTAAAGAAAATTTATGTGGTTTCATCCCATCCACCATAGAGATTTTAGATGAGAAACATGGATCTATCTTTTTGAATTTTGGAGATATTGAGTTCATTGAACCTCCCTCAAAAGTTAAAGATGAATTATTTGTCAAGGATTTTTCAAATCCAATTGATTTAGTCAGGGTAAATCAAGTGTTAAAGGAGGAAGGTTTCAGGTTGAAGATTTAG

Protein sequence

MEVKSCKADGFFFCIWHELGSFYVEDLEVNKLLILSNSQLRWFVDNILDLIKESTSQFFERSGRDGFSSTKLSKFLSSSGWIMRCVVWPSSGGRYFIHIPSGETMQALPNQNEGYGDLLKSSKIQQRPIFQSKFRRLKPSFTQVPENQCKSQHCVLKNFDVKQEDFSKLWLVTKLFKFNDWAEIAKTLKIYFSSKIIINPLFAENALIKLDQGSLEDLIANPGRWMSCGSFHLKFEKWNKLVHSRPLYSKGYEGWISIKNLLLDYWYRQTFEAIGAYFGGLEDIASDTLNLINVSEAKIQVKENLCGFIPSTIEILDEKHGSIFLNFGDIEFIEPPSKVKDELFVKDFSNPIDLVRVNQVLKEEGFRLKI

Homology

[Close]

BLAST of Cla013141 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 49/155 (31.61%), Postives = 85/155 (54.84%), Query Frame = 1


Query: 171 LVTKLFKFNDWAEIAKTLKIYFSSKIIINPLFAENALIKLDQGSLEDLIANPGRWMSCGS 230
           ++T+ +  +DW +I + L     + +   P  A  ALI        +LI     W + G 
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 231 FHLKFEKWNKLVHSRPLYSKGYEGWISIKNLLLDYWYRQTFEAIGAYFGGLEDIASDTLN 290
           F++KFE+WN+  H+ P +   Y GWI ++ + L  W  ++F  IG   GG  ++A +T  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 291 LINVSEAKIQVKENLCGFIPSTIEILDEKHGSIFL 326
           L ++ EA I+VK+N  GFIP+ I+++D++  S  +
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYII 287

[Close]

BLAST of Cla013141 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-18
Identity = 49/155 (31.61%), Postives = 85/155 (54.84%), Query Frame = 1


Query: 171 LVTKLFKFNDWAEIAKTLKIYFSSKIIINPLFAENALIKLDQGSLEDLIANPGRWMSCGS 230
           ++T+ +  +DW +I + L     + +   P  A  ALI        +LI     W + G 
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 231 FHLKFEKWNKLVHSRPLYSKGYEGWISIKNLLLDYWYRQTFEAIGAYFGGLEDIASDTLN 290
           F++KFE+WN+  H+ P +   Y GWI ++ + L  W  ++F  IG   GG  ++A +T  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 291 LINVSEAKIQVKENLCGFIPSTIEILDEKHGSIFL 326
           L ++ EA I+VK+N  GFIP+ I+++D++  S  +
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYII 287

[Close]

BLAST of Cla013141 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 1


Query: 154 CVLKNFDVKQEDFSKLWLVTKLFKFNDWAEIAKTLKIYFSSKIIINPLFAENALIKLDQG 213
           CV  +FD+ +       ++ + F  +DW +I + L+         N   A+ AL+     
Sbjct: 193 CVSPSFDLLENTV----VIIRRFFHDDWYKILQNLRKQTEESFTYNAFHADKALVHFSSS 252

Query: 214 SLEDLIANPGRWMSCGSFHLKFEKWNKLVHSRPLYSKGYEGWISIKNLLLDYWYRQTFEA 273
              +L+     W + G + ++FEKW  + H+ P     Y GW   + + L  W  +TF+ 
Sbjct: 253 IPANLLCQNKGWTTVGKYSVRFEKWCPIQHATPKLIPSYGGWTIFRGIPLHLWNMKTFQQ 312

Query: 274 IGAYFGGLEDIASDTLNLINVSEAKIQVKENLCGFIPSTIEILDEK 320
           IG   GGL  +A +T +  N+ EAKI+++ N  GF+P+ + I D +
Sbjct: 313 IGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSGFLPANVRIFDNE 354

The following BLAST results are available for this feature:

BLAST of Cla013141 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	1.5e-18	31.61	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla013141 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135793\|gb\|ADN33672.1\|	2.2e-18	31.61	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	2.7e-16	28.31	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013141	Cla013141.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013141	Cucurbita maxima (Rimu)	cmawmB243
Cla013141	Cucurbita maxima (Rimu)	cmawmB434
Cla013141	Cucurbita moschata (Rifu)	cmowmB232
Cla013141	Cucurbita moschata (Rifu)	cmowmB427
Cla013141	Melon (DHL92) v3.5.1	mewmB461
Cla013141	Watermelon (Charleston Gray)	wcgwmB286
Cla013141	Cucumber (Chinese Long) v2	cuwmB243
Cla013141	Cucurbita pepo (Zucchini)	cpewmB568
Cla013141	Cucurbita pepo (Zucchini)	cpewmB614
Cla013141	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013141	Cucumber (Gy14) v2	cgybwmB229
Cla013141	Melon (DHL92) v3.6.1	medwmB448
Cla013141	Silver-seed gourd	carwmB0166
Cla013141	Silver-seed gourd	carwmB0760
Cla013141	Cucumber (Chinese Long) v3	cucwmB252
Cla013141	Watermelon (97103) v2	wmwmbB206
Cla013141	Wax gourd	wgowmB202
Cla013141	Cucumber (Gy14) v1	cgywmB153