Cla013126 (gene) Watermelon (97103) v1

Overview
NameCla013126
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 11198265 .. 11198615 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCAGAGTTGGTGGAGTGGACACCATCGGAGGTTGCCGGAGTTGGTTGTCAATAGTGGTAATTGAATGTTGTTGGAGTTGGCCGCATGCGATGGTTGCCGGAGTTGATCGTCGGAGTTGGACGTCGGAGGTGGTTGCCGGATTTAGCCTTTGGAGGTGGCCACCGGAAGTTGGCCGTCAAAGATGGTCGTTGGAGTTGGCCGTCGGAAGTGCTTGGCAAATTTGGCCGTTGGAGGTAGTCGTCGGAGTTGGCCATTGGAGGTGGTCGCCGGAGTTGAGCAACGAGATATCGGTGGTGATGAAGGCTGAGTGCATTGTTGGTGGACTTGGTATAAAATGTAGGTGA

mRNA sequence

ATGGTTGTCAGAGTTGGTGGAGTGGACACCATCGGAGGTTGCCGGAGTTGGTTGTCAATAGTGGTAATTGAATGTTGTTGGAGTTGGCCGCATGCGATGGTTGCCGGAGTTGATCGTCGGAGTTGGACGTCGGAGGTGGTTGCCGGATTTAGCCTTTGGAGGTGGCCACCGGAAGTTGGCCGTCAAAGATGGTCGTTGGAGTTGGCCGTCGGAAGTGCTTGGCAAATTTGGCCGTTGGAGGTAGTCGTCGGAGTTGGCCATTGGAGGTGGTCGCCGGAGTTGAGCAACGAGATATCGGTGGTGATGAAGGCTGAGTGCATTGTTGGTGGACTTGGTATAAAATGTAGGTGA

Coding sequence (CDS)

ATGGTTGTCAGAGTTGGTGGAGTGGACACCATCGGAGGTTGCCGGAGTTGGTTGTCAATAGTGGTAATTGAATGTTGTTGGAGTTGGCCGCATGCGATGGTTGCCGGAGTTGATCGTCGGAGTTGGACGTCGGAGGTGGTTGCCGGATTTAGCCTTTGGAGGTGGCCACCGGAAGTTGGCCGTCAAAGATGGTCGTTGGAGTTGGCCGTCGGAAGTGCTTGGCAAATTTGGCCGTTGGAGGTAGTCGTCGGAGTTGGCCATTGGAGGTGGTCGCCGGAGTTGAGCAACGAGATATCGGTGGTGATGAAGGCTGAGTGCATTGTTGGTGGACTTGGTATAAAATGTAGGTGA

Protein sequence

MVVRVGGVDTIGGCRSWLSIVVIECCWSWPHAMVAGVDRRSWTSEVVAGFSLWRWPPEVGRQRWSLELAVGSAWQIWPLEVVVGVGHWRWSPELSNEISVVMKAECIVGGLGIKCR
Homology
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BLAST of Cla013126 vs. NCBI nr
Match: gi|727440815|ref|XP_010501877.1| (PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 41/92 (44.57%), Postives = 49/92 (53.26%), Query Frame = 1 

Query: 12  GGCRSWLSIVVIECCW-SWPHAMVAGVDRRSWTSEVVAGFSL----WRWPPEV--GRQRW 71
           GG RSW   VV      SW  AMVAGV RR W+ E+VAG        RW PE+  G  R 
Sbjct: 32  GGRRSWSPAVVAGVGRRSWSPAMVAGVGRRRWSPELVAGDGRRRCHRRWSPELVAGDDRR 91

Query: 72  SLELAV--GSAWQIWPLEVVVGVGHWRWSPEL 95
           SL  A+  G   + W LE+V G G W WS ++
Sbjct: 92  SLSPAMIAGVGRRRWSLELVTGSGRWNWSSKV 123

The following BLAST results are available for this feature:
BLAST of Cla013126 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|727440815|ref|XP_010501877.1|3.0e-0644.57PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013126Cla013126.1mRNA