Cla013022 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013022
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 9968185 .. 9969578 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTGGAATGTTCTTTCAAATATCCAGATTTCTTGTAGACACTATGCCAAACCTGGAAAAACTAGACAAGTTAAGGATGTTTTTGCTGACTGTCCTCCTGATACTGGAAGAATTACATCAAATAGTTTGTCTGATGCCAACGCTGGTTCTCAATATAAGAAAGTACATAATAGTTTTAGTGAATTCAGTGTTGATACAACTAAACCTTCAAGTTTCCAATTGAATCTTTCTGCACCATCAAGTAATATTAAAGTTATGGAGGGCCAAAATGATGTAGATGGGAATAATACGGCCAGACTGCGGACGATCAATCATTCTCATTCTCAGAGGTTGGATGACTCAGTCAATTTTGCATCTAACCAGAGACACATGTGTTCCTCATTTTTGGAGGATGAGGATGACGACATAATAGAGGTAATCTTAATACATATGTATTATTTTTTGTTTATATAAAGCTGTTGAAAATAAAAGAGGATTTTTGGGAATCTTGTAGATTTTGTATTTTGCCTTTTATATTCTCTAATATTCTTTTCTTATATTTTTTTGGGTCTCTATTTATTTTCTTCCCTTATAACATTTAAACATATCAAATTAATAAAAGAGAAAAGTTCGATCGTGGTTTTTTCTCCCTGTACTAGGGTTTTCCACGTAAATCTTGTTTGTCTTTTCTCTTCCTTTTTCAATATGGTATCAGAGCATGGTGACGAAACCCTAGAAACCCTAGCCGTCGTTGACGAAAATGAGACTAGGCAAGATCCGCCGCCACCACCTTACCTGCCGCCGTTGTCGATGGAGTCCACCACTGCCACCGGTTCGGTCGTCCGAGAAGCTGTCAACCAGTACCTTCGGTCACTTAACCCAGTCGTTGCCGCAGCGCTATTACAGTCCTTACCGCCGCAGTTGCAAAACCCTAGCGTCATGCTACCTCTCAAACTCGACCGCCACTGATGGACCCTGCTACTGCTGCCACTCGAATAGATTCAGCGAGAGCGAGTCTCGCTTCAAGTGCCGCCGCTACTTCTCTACTCGATTTAGCAAGAGCGAGTCTCGATTCAGTGAGAGTGAGTCTCGCTACTTCCCTTAATCCGCTACTCAATCCAGCGAGAGTGGGTCTCGGTCCAAGTACAGTCGCGGGAACTTCTTCTCAAGGACCGATTTCGAGATTCCATGAGCTACCGGGAGCTGTTACCGTCCAACCAAGCACCGAAAGGCTACACCATTTTCAAGGATCGACGTTCCATGAGGCTGACGACGCCAACTTCAATCCACATGATGTGGGTGCCCAATATTTCCCTCCTACAGCTGCTGCTGTTGCCGGAATTCCTCACCAAGGAGTCGGCAACTATTATGAGCAGCATGGATTGGCTGGCTCTTCCTTGGTTACGGTTCAATAG

mRNA sequence

GCCTGGAATGTTCTTTCAAATATCCAGATTTCTTGTAGACACTATGCCAAACCTGGAAAAACTAGACAAGTTAAGGATGTTTTTGCTGACTGTCCTCCTGATACTGGAAGAATTACATCAAATAGTTTGTCTGATGCCAACGCTGGTTCTCAATATAAGAAAGTACATAATAGTTTTAGTGAATTCAGTGTTGATACAACTAAACCTTCAAGTTTCCAATTGAATCTTTCTGCACCATCAAGTAATATTAAAGTTATGGAGGGCCAAAATGATGTAGATGGGAATAATACGGCCAGACTGCGGACGATCAATCATTCTCATTCTCAGAGGTTGGATGACTCAGTCAATTTTGCATCTAACCAGAGACACATGTGTTCCTCATTTTTGGAGGATGAGGATGACGACATAATAGAGCGTCATGCTACCTCTCAAACTCGACCGCCACTGATGGACCCTGCTACTGCTGCCACTCGAATAGATTCAGCGAGAGCGAGTCTCGCTTCAAGTGCCGCCGCTACTTCTCTACTCGATTTAGCAAGAGCGAGTCTCGATTCAGTGAGAGTGAGTCTCGCTACTTCCCTTAATCCGCTACTCAATCCAGCGAGAGTGGGTCTCGGTCCAAGTACAGTCGCGGGAACTTCTTCTCAAGGACCGATTTCGAGATTCCATGAGCTACCGGGAGCTGTTACCGTCCAACCAAGCACCGAAAGGCTACACCATTTTCAAGGATCGACGTTCCATGAGGCTGACGACGCCAACTTCAATCCACATGATGTGGGTGCCCAATATTTCCCTCCTACAGCTGCTGCTGTTGCCGGAATTCCTCACCAAGGAGTCGGCAACTATTATGAGCAGCATGGATTGGCTGGCTCTTCCTTGGTTACGGTTCAATAG

Coding sequence (CDS)

GCCTGGAATGTTCTTTCAAATATCCAGATTTCTTGTAGACACTATGCCAAACCTGGAAAAACTAGACAAGTTAAGGATGTTTTTGCTGACTGTCCTCCTGATACTGGAAGAATTACATCAAATAGTTTGTCTGATGCCAACGCTGGTTCTCAATATAAGAAAGTACATAATAGTTTTAGTGAATTCAGTGTTGATACAACTAAACCTTCAAGTTTCCAATTGAATCTTTCTGCACCATCAAGTAATATTAAAGTTATGGAGGGCCAAAATGATGTAGATGGGAATAATACGGCCAGACTGCGGACGATCAATCATTCTCATTCTCAGAGGTTGGATGACTCAGTCAATTTTGCATCTAACCAGAGACACATGTGTTCCTCATTTTTGGAGGATGAGGATGACGACATAATAGAGCGTCATGCTACCTCTCAAACTCGACCGCCACTGATGGACCCTGCTACTGCTGCCACTCGAATAGATTCAGCGAGAGCGAGTCTCGCTTCAAGTGCCGCCGCTACTTCTCTACTCGATTTAGCAAGAGCGAGTCTCGATTCAGTGAGAGTGAGTCTCGCTACTTCCCTTAATCCGCTACTCAATCCAGCGAGAGTGGGTCTCGGTCCAAGTACAGTCGCGGGAACTTCTTCTCAAGGACCGATTTCGAGATTCCATGAGCTACCGGGAGCTGTTACCGTCCAACCAAGCACCGAAAGGCTACACCATTTTCAAGGATCGACGTTCCATGAGGCTGACGACGCCAACTTCAATCCACATGATGTGGGTGCCCAATATTTCCCTCCTACAGCTGCTGCTGTTGCCGGAATTCCTCACCAAGGAGTCGGCAACTATTATGAGCAGCATGGATTGGCTGGCTCTTCCTTGGTTACGGTTCAATAG

Protein sequence

AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFSEFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASNQRHMCSSFLEDEDDDIIERHATSQTRPPLMDPATAATRIDSARASLASSAAATSLLDLARASLDSVRVSLATSLNPLLNPARVGLGPSTVAGTSSQGPISRFHELPGAVTVQPSTERLHHFQGSTFHEADDANFNPHDVGAQYFPPTAAAVAGIPHQGVGNYYEQHGLAGSSLVTVQ

Homology

[Close]

BLAST of Cla013022 vs. TrEMBL
Match: A0A0A0L762_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G221760 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54
Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AWN LSN QISCRHYAKPG TRQVKDVF+D P DTGRITSNSLSDANA S +KKVH +FS
Sbjct: 62  AWNALSNFQISCRHYAKPGNTRQVKDVFSDHPADTGRITSNSLSDANASSHHKKVHRNFS 121

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASN 120
           E+SVDTTKPSSF  NLSA SSNI+VMEGQNDVDGNN ARLRTIN+SH QR+D SV FA+N
Sbjct: 122 EYSVDTTKPSSFGSNLSA-SSNIQVMEGQNDVDGNNMARLRTINNSHFQRVDGSVIFATN 181

Query: 121 QRHMCSSFLEDEDDDIIE 139
           Q+++CSSFLEDEDD IIE
Sbjct: 182 QKNICSSFLEDEDDKIIE 198

[Close]

BLAST of Cla013022 vs. TrEMBL
Match: M5WMH6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000416mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-07
Identity = 53/187 (28.34%), Postives = 85/187 (45.45%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AW+ LSN+QIS R+Y KPGKT  VKD  +    D GR  + S  D +    + + H   +
Sbjct: 22  AWHALSNLQISHRNYTKPGKTVLVKDASSRYCRDVGRTATPSSCDIDKSHTHMQTHQYIN 81

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQ----RLDDSVN 120
             +   ++ ++  L    PSSN+ V +  N   G +  R   +N+  S+       ++  
Sbjct: 82  GTNSRNSEAATC-LGNRFPSSNVNVADVGNFFGGQSQVRASMVNNFDSRVPGGSFSNNSV 141

Query: 121 FASNQRHMCSSFLEDEDDD-----------IIERHATSQTRPPL---MDPATAATRIDS- 169
             S  +H     + D DDD           I+E++ ++ T  PL   + P T +   DS 
Sbjct: 142 HTSQIKHSAKVLVNDIDDDDEILENIDVDQIVEQYQSNCTPQPLISKLPPITPSIDKDSI 201

[Close]

BLAST of Cla013022 vs. NCBI nr
Match: gi|778680266|ref|XP_011651280.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 2.6e-54
Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AWN LSN QISCRHYAKPG TRQVKDVF+D P DTGRITSNSLSDANA S +KKVH +FS
Sbjct: 82  AWNALSNFQISCRHYAKPGNTRQVKDVFSDHPADTGRITSNSLSDANASSHHKKVHRNFS 141

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASN 120
           E+SVDTTKPSSF  NLSA SSNI+VMEGQNDVDGNN ARLRTIN+SH QR+D SV FA+N
Sbjct: 142 EYSVDTTKPSSFGSNLSA-SSNIQVMEGQNDVDGNNMARLRTINNSHFQRVDGSVIFATN 201

Query: 121 QRHMCSSFLEDEDDDIIE 139
           Q+++CSSFLEDEDD IIE
Sbjct: 202 QKNICSSFLEDEDDKIIE 218

[Close]

BLAST of Cla013022 vs. NCBI nr
Match: gi|700202460|gb|KGN57593.1| (hypothetical protein Csa_3G221760 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 2.6e-54
Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AWN LSN QISCRHYAKPG TRQVKDVF+D P DTGRITSNSLSDANA S +KKVH +FS
Sbjct: 62  AWNALSNFQISCRHYAKPGNTRQVKDVFSDHPADTGRITSNSLSDANASSHHKKVHRNFS 121

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASN 120
           E+SVDTTKPSSF  NLSA SSNI+VMEGQNDVDGNN ARLRTIN+SH QR+D SV FA+N
Sbjct: 122 EYSVDTTKPSSFGSNLSA-SSNIQVMEGQNDVDGNNMARLRTINNSHFQRVDGSVIFATN 181

Query: 121 QRHMCSSFLEDEDDDIIE 139
           Q+++CSSFLEDEDD IIE
Sbjct: 182 QKNICSSFLEDEDDKIIE 198

[Close]

BLAST of Cla013022 vs. NCBI nr
Match: gi|659112088|ref|XP_008456060.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AWN LSN QISCRHYAK G TRQVKDVF+D P D+ RITSNSLSDANA SQ+KKVH  FS
Sbjct: 49  AWNALSNFQISCRHYAKLGNTRQVKDVFSDRPADSRRITSNSLSDANASSQHKKVHRHFS 108

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASN 120
           E++VDTTKPSSF+ NLSA S NIKVME QNDVDGNN ARLRTINHSH QR+ DSV+FA+N
Sbjct: 109 EYNVDTTKPSSFRSNLSA-SRNIKVMEDQNDVDGNNMARLRTINHSHFQRVGDSVSFATN 168

Query: 121 QRHMCSSFLEDEDDDIIE 139
           Q+++C SFLEDEDD+IIE
Sbjct: 169 QKNICPSFLEDEDDEIIE 185

[Close]

BLAST of Cla013022 vs. NCBI nr
Match: gi|659112086|ref|XP_008456059.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AWN LSN QISCRHYAK G TRQVKDVF+D P D+ RITSNSLSDANA SQ+KKVH  FS
Sbjct: 82  AWNALSNFQISCRHYAKLGNTRQVKDVFSDRPADSRRITSNSLSDANASSQHKKVHRHFS 141

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASN 120
           E++VDTTKPSSF+ NLSA S NIKVME QNDVDGNN ARLRTINHSH QR+ DSV+FA+N
Sbjct: 142 EYNVDTTKPSSFRSNLSA-SRNIKVMEDQNDVDGNNMARLRTINHSHFQRVGDSVSFATN 201

Query: 121 QRHMCSSFLEDEDDDIIE 139
           Q+++C SFLEDEDD+IIE
Sbjct: 202 QKNICPSFLEDEDDEIIE 218

[Close]

BLAST of Cla013022 vs. NCBI nr
Match: gi|659112082|ref|XP_008456057.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 1


Query: 1   AWNVLSNIQISCRHYAKPGKTRQVKDVFADCPPDTGRITSNSLSDANAGSQYKKVHNSFS 60
           AWN LSN QISCRHYAK G TRQVKDVF+D P D+ RITSNSLSDANA SQ+KKVH  FS
Sbjct: 82  AWNALSNFQISCRHYAKLGNTRQVKDVFSDRPADSRRITSNSLSDANASSQHKKVHRHFS 141

Query: 61  EFSVDTTKPSSFQLNLSAPSSNIKVMEGQNDVDGNNTARLRTINHSHSQRLDDSVNFASN 120
           E++VDTTKPSSF+ NLSA S NIKVME QNDVDGNN ARLRTINHSH QR+ DSV+FA+N
Sbjct: 142 EYNVDTTKPSSFRSNLSA-SRNIKVMEDQNDVDGNNMARLRTINHSHFQRVGDSVSFATN 201

Query: 121 QRHMCSSFLEDEDDDIIE 139
           Q+++C SFLEDEDD+IIE
Sbjct: 202 QKNICPSFLEDEDDEIIE 218

The following BLAST results are available for this feature:

BLAST of Cla013022 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L762_CUCSA	1.8e-54	80.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G221760 PE=4 SV=1	[more]
M5WMH6_PRUPE	4.8e-07	28.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000416mg PE=4 SV=1	[more]

BLAST of Cla013022 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680266\|ref\|XP_011651280.1\|	2.6e-54	80.43	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis sativus]	[more]
gi\|700202460\|gb\|KGN57593.1\|	2.6e-54	80.43	hypothetical protein Csa_3G221760 [Cucumis sativus]	[more]
gi\|659112088\|ref\|XP_008456060.1\|	3.2e-52	77.54	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo]	[more]
gi\|659112086\|ref\|XP_008456059.1\|	3.2e-52	77.54	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo]	[more]
gi\|659112082\|ref\|XP_008456057.1\|	3.2e-52	77.54	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005657	replication fork
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004372	glycine hydroxymethyltransferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0043140	ATP-dependent 3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0009378	four-way junction helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013022	Cla013022.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013022	Cla97C05G091920	Watermelon (97103) v2	wmwmbB206
Cla013022	Csa3G221760	Cucumber (Chinese Long) v2	cuwmB243
Cla013022	ClCG05G009530	Watermelon (Charleston Gray)	wcgwmB286
Cla013022	CSPI03G19060	Wild cucumber (PI 183967)	cpiwmB242
Cla013022	Cucsa.032970	Cucumber (Gy14) v1	cgywmB002
Cla013022	CmaCh16G003850	Cucurbita maxima (Rimu)	cmawmB317
Cla013022	CmoCh16G004170	Cucurbita moschata (Rifu)	cmowmB311
Cla013022	Lsi05G001700	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013022	Cp4.1LG14g03910	Cucurbita pepo (Zucchini)	cpewmB228
Cla013022	CsGy3G018970	Cucumber (Gy14) v2	cgybwmB229
Cla013022	MELO3C019447.2	Melon (DHL92) v3.6.1	medwmB448
Cla013022	Carg11314	Silver-seed gourd	carwmB0655
Cla013022	CsaV3_3G019190	Cucumber (Chinese Long) v3	cucwmB252
Cla013022	Bhi01G001196	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013022	Silver-seed gourd	carwmB0048
Cla013022	Cucurbita maxima (Rimu)	cmawmB703
Cla013022	Cucurbita moschata (Rifu)	cmowmB699
Cla013022	Melon (DHL92) v3.5.1	mewmB461
Cla013022	Cucurbita pepo (Zucchini)	cpewmB433