Cla012999 (gene) Watermelon (97103) v1

Overview
NameCla012999
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 22738552 .. 22739278 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATCTAGTTATATATCGTCCCAGTGTGGAAATGCTTTGATACTGGAATTATATAGTCCTTATCGGTTTGGGCAACAGTTTGAATTTTATCAAGACACCCCTAATGATATAAGAGGAATACCCCCTATCATCACTTTCAATAATATATTATATCACTTTAGGGTCTGCACCAGATGTAACACATCATCTCAAGTGTTCTTGCCAGCTCGTACGTTGGAGCCACGCAACCATGTTACACCGCAATATAGAAACTAGTGGTTGTTAAAACATGGGAGTTATTTTGTGGATAATATACATCACTTAGTAAATAACGCTATTCCTCCCCTATTGCAACCCCGATTACCGAAGAACAAAGGAGCCAACCAAAGAAAGTCACAGTAGCACTAGTGAACATCATTGGAAGGGACCCCCAGAGAAAGTGAAGGCGTCCTGTGATAATTTTTTGAAGGGGTTCCAAGTGCTTCAAGACTCCCTAGTGCTACTATACCGCTGGTATGTATGTTTCTCTCCTTAAGTTCTCATTGTTCTTTTCTTTAGCAGATAATTTATGTTTTCCTTTTTTTGGTAGGATTCATCCATGGAGAAAGTCAGTACTTCTAAATTGCCGTCAGTTGAAACAACTAGACAACCCCCACGACCTTTTGTTATTTCTGAAGACATTCAACATGCCAAGGAGAAAGTAGGCATCGAGAGGGTGGCATTTTTAGCCCCTCCGCCTGAGTAA

mRNA sequence

ATGCGATCTAGTTATATATCGTCCCAGTGTGGAAATGCTTTGATACTGGAATTATATAGTCCTTATCGGTTTGGGCAACAGTTTGAATTTTATCAAGACACCCCTAATGATATAAGAGGAATACCCCCTATCATCACTTTCAATAATATATTATATCACTTTAGGGTCTGCACCAGATGTAACACATCATCTCAAGTGTTCTTGCCAGCTCGGGTTCCAAGTGCTTCAAGACTCCCTAGTGCTACTATACCGCTGGATTCATCCATGGAGAAAGTCAGTACTTCTAAATTGCCGTCAGTTGAAACAACTAGACAACCCCCACGACCTTTTGTTATTTCTGAAGACATTCAACATGCCAAGGAGAAAGTAGGCATCGAGAGGGTGGCATTTTTAGCCCCTCCGCCTGAGTAA

Coding sequence (CDS)

ATGCGATCTAGTTATATATCGTCCCAGTGTGGAAATGCTTTGATACTGGAATTATATAGTCCTTATCGGTTTGGGCAACAGTTTGAATTTTATCAAGACACCCCTAATGATATAAGAGGAATACCCCCTATCATCACTTTCAATAATATATTATATCACTTTAGGGTCTGCACCAGATGTAACACATCATCTCAAGTGTTCTTGCCAGCTCGGGTTCCAAGTGCTTCAAGACTCCCTAGTGCTACTATACCGCTGGATTCATCCATGGAGAAAGTCAGTACTTCTAAATTGCCGTCAGTTGAAACAACTAGACAACCCCCACGACCTTTTGTTATTTCTGAAGACATTCAACATGCCAAGGAGAAAGTAGGCATCGAGAGGGTGGCATTTTTAGCCCCTCCGCCTGAGTAA

Protein sequence

MRSSYISSQCGNALILELYSPYRFGQQFEFYQDTPNDIRGIPPIITFNNILYHFRVCTRCNTSSQVFLPARVPSASRLPSATIPLDSSMEKVSTSKLPSVETTRQPPRPFVISEDIQHAKEKVGIERVAFLAPPPE
Homology
[Close]
BLAST of Cla012999 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1 

Query: 1   MRSSYISSQCGNALILELYSPYRFGQQFEFYQDTPNDIRGIPPIITFNNILYHFRVCTRC 60
           MRS Y+SS+C N  I+  YSPYR G+QF FYQD PNDI G+PP IT +NILYH+R+CTR 
Sbjct: 211 MRSCYLSSRCENTWIITSYSPYRLGRQFGFYQDLPNDIGGMPPAITLDNILYHWRICTRR 270

Query: 61  NTSSQVFLPAR 72
            T  +++LP R
Sbjct: 271 YTLFELYLPVR 281

[Close]
BLAST of Cla012999 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 29.3 bits (64), Expect = 4.6e+03
Identity = 15/40 (37.50%), Postives = 22/40 (55.00%), Query Frame = 1 

Query: 85  LDSSMEKVSTSKLPSVETTRQPPRPFVISEDIQHAKEKVG 125
           +DS+ E+V TSK P  +   Q   P  + E+I+  K  VG
Sbjct: 403 VDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVG 442


HSP 2 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 1 

Query: 1   MRSSYISSQCGNALILELYSPYRFGQQFEFYQDTPNDIRGIPPIITFNNILYHFRVCTRC 60
           MRS +++ +  N  ++E YSP+RFG+QF F+QD P ++      IT  ++ Y F+   R 
Sbjct: 380 MRSCFLTLRFDNNYVVEPYSPHRFGRQFGFHQDVPGELVVQTQNITREHMYYLFQSSIRL 439

Query: 61  NTSSQVFLPARVPSA-SRL-PSATIPLDS--SMEKVSTSKLPSVETTRQPPR 109
           +T +   +P R  +A SR+ PS T   +S  S+   S SK PS   TR   R
Sbjct: 440 HTRATFLVPCRTFNAQSRVTPSFTSWWESVISLTVASASKTPSPTNTRSKKR 491

[Close]
BLAST of Cla012999 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1 

Query: 1   MRSSYISSQCGNALILELYSPYRFGQQFEFYQDTPNDIRGIPPIITFNNILYHFRVCTRC 60
           MRS Y+SS+C N  I+  YSPYR G+QF FYQD PNDI G+PP IT +NILYH+R+CTR 
Sbjct: 211 MRSCYLSSRCENTWIITSYSPYRLGRQFGFYQDLPNDIGGMPPAITLDNILYHWRICTRR 270

Query: 61  NTSSQVFLPAR 72
            T  +++LP R
Sbjct: 271 YTLFELYLPVR 281

[Close]
BLAST of Cla012999 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 29.3 bits (64), Expect = 6.7e+03
Identity = 15/40 (37.50%), Postives = 22/40 (55.00%), Query Frame = 1 

Query: 85  LDSSMEKVSTSKLPSVETTRQPPRPFVISEDIQHAKEKVG 125
           +DS+ E+V TSK P  +   Q   P  + E+I+  K  VG
Sbjct: 403 VDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVG 442


HSP 2 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 1 

Query: 1   MRSSYISSQCGNALILELYSPYRFGQQFEFYQDTPNDIRGIPPIITFNNILYHFRVCTRC 60
           MRS +++ +  N  ++E YSP+RFG+QF F+QD P ++      IT  ++ Y F+   R 
Sbjct: 380 MRSCFLTLRFDNNYVVEPYSPHRFGRQFGFHQDVPGELVVQTQNITREHMYYLFQSSIRL 439

Query: 61  NTSSQVFLPARVPSA-SRL-PSATIPLDS--SMEKVSTSKLPSVETTRQPPR 109
           +T +   +P R  +A SR+ PS T   +S  S+   S SK PS   TR   R
Sbjct: 440 HTRATFLVPCRTFNAQSRVTPSFTSWWESVISLTVASASKTPSPTNTRSKKR 491

The following BLAST results are available for this feature:
BLAST of Cla012999 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME1.8e-1760.56Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB9_CUCME4.6e+0337.50Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla012999 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|2.6e-1760.56hypothetical protein [Cucumis melo subsp. melo][more]
gi|307136292|gb|ADN34118.1|6.7e+0337.50hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012999Cla012999.1mRNA