Cla012991 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012991
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Self-incompatibility protein (Fragment) (AHRD V1 ***- C7FE84_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
Location	Chr9 : 22627175 .. 22627465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGGTTGCAGAGCTTGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCTTGTTGGTTCATTGCAAATCCAAAGACAATTATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCAATTGGAGATTTAAAGTAAACTTTTGGAATACGACATTGTTTTGGTGTTACTTGCAGAAGCCCAATGGACTACATTCGTCATTCAAAGCCTTTTGGATTGAGAGCACATCAGTTTGGCTCTATGATATGTGCTACGATTCTGAATGCATTTAG

mRNA sequence

CCAAGGTTGCAGAGCTTGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCTTGTTGGTTCATTGCAAATCCAAAGACAATTATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCAATTGGAGATTTAAAGTAAACTTTTGGAATACGACATTGTTTTGGTGTTACTTGCAGAAGCCCAATGGACTACATTCGTCATTCAAAGCCTTTTGGATTGAGAGCACATCAGTTTGGCTCTATGATATGTGCTACGATTCTGAATGCATTTAG

Coding sequence (CDS)

CCAAGGTTGCAGAGCTTGCTTGCAAAATGGCAGATCCATGTTGTGAATCGGCTAAGCAATGGCCAAATCTTGTTGGTTCATTGCAAATCCAAAGACAATTATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCAATTGGAGATTTAAAGTAAACTTTTGGAATACGACATTGTTTTGGTGTTACTTGCAGAAGCCCAATGGACTACATTCGTCATTCAAAGCCTTTTGGATTGAGAGCACATCAGTTTGGCTCTATGATATGTGCTACGATTCTGAATGCATTTAG

Protein sequence

PRLQSLLAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFKAFWIESTSVWLYDMCYDSECI

Homology

[Close]

BLAST of Cla012991 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK 66
           L+ W+IH+ N LS+GQ L VHCKSKD+ LGE  LS G+EF W FKVN W+TTLFWCYL+K
Sbjct: 27  LSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWNFKVNIWDTTLFWCYLRK 86

Query: 67  PNGLHSSFKAFWIESTSVWLYDMCYDSEC 96
           P G    F+AFW+E  + WL   C  + C
Sbjct: 87  PKGDQVRFEAFWVEKKTRWLRVKCDGNIC 115

[Close]

BLAST of Cla012991 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.2e-21
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 10  WQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNG 69
           W +HVVN LSN Q L +HCKSKD+ LGEHKL+ G+E NW+FK NF+ TTLFWC+L+KP+ 
Sbjct: 31  WHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTGTESNWKFKENFFQTTLFWCHLRKPDN 90

Query: 70  LHSSFKAFWIESTSVWLYDMCYDSECI 97
             ++FK FW E    +    C   +CI
Sbjct: 91  FCNNFKVFWNED---FFQFRCRYKDCI 114

[Close]

BLAST of Cla012991 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-19
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 10  WQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNG 69
           W +HVVN LSN Q LLVHCKSKD+ LGEH L+ G+EF W+FK NF+ TTLFWCYL+K + 
Sbjct: 35  WHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFAWKFKENFFQTTLFWCYLKKQDK 94

Query: 70  LHSSFKAFWIE 81
             + F  FW E
Sbjct: 95  FCNIFNVFWKE 105

[Close]

BLAST of Cla012991 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.9e-19
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 9   KWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPN 68
           KW +HVVN L  G+ L  HCKSKD+ LGE  L+ G+EFNW FK NF+ TTL+WCY+   +
Sbjct: 18  KWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYM-STD 77

Query: 69  GLHSSFKAFWIESTSVWLYDMCYDSECI 97
             H++   FW+E    WL   C   +CI
Sbjct: 78  QKHAALDVFWVEGDHSWLQYRCNWKDCI 104

[Close]

BLAST of Cla012991 vs. TrEMBL
Match: A0A0D2R918_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-18
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK 66
           L  W +H VN LSNG+ILLVHCKSKDN LG H L+VG+EF+W+FK+NF+  TLFWCY+  
Sbjct: 39  LITWHVHTVNGLSNGEILLVHCKSKDNDLGIHNLTVGTEFSWKFKLNFFGGTLFWCYMAH 98

Query: 67  PNGLHSSFKAF-WIESTSVWLYDMCYDSECI 97
            N  H++   F  IE      +D C   +CI
Sbjct: 99  DN-FHATLDVFREIEG----FFDECNYGDCI 124

[Close]

BLAST of Cla012991 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 9.4e-30
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK 66
           L KW +HV+N L+  Q LLVHCKSKDN LGEH ++VGSE+NW F++N + TTLFWC L+K
Sbjct: 34  LEKWTVHVMNDLTKAQKLLVHCKSKDNDLGEHSVNVGSEYNWSFRINIFETTLFWCELRK 93

Query: 67  PNGLHSSFKAFWIESTSVWLYDMCYDSEC 96
           PNG H+SF+AFW+E TS+WLY  C +S+C
Sbjct: 94  PNGQHASFEAFWVEKTSIWLYYRCLESKC 122

[Close]

BLAST of Cla012991 vs. NCBI nr
Match: gi|778730341|ref|XP_011659760.1| (PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 8.2e-26
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK 66
           L+ W+IH+ N LS+GQ L VHCKSKD+ LGE  LS G+EF W FKVN W+TTLFWCYL+K
Sbjct: 27  LSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWNFKVNIWDTTLFWCYLRK 86

Query: 67  PNGLHSSFKAFWIESTSVWLYDMCYDSEC 96
           PNG    F AFW+E  + WL   CY + C
Sbjct: 87  PNGDQVRFDAFWVEKKTEWLRVKCYGNIC 115

[Close]

BLAST of Cla012991 vs. NCBI nr
Match: gi|659116359|ref|XP_008458036.1| (PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-24
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK 66
           L+ W+IH+ N LSNGQ L V CKSKD+ LG+  LS G+EF W FKVN W+TTLFWCYL+K
Sbjct: 27  LSSWEIHIKNGLSNGQALFVQCKSKDSDLGKQTLSTGAEFKWNFKVNIWDTTLFWCYLRK 86

Query: 67  PNGLHSSFKAFWIESTSVWLYDMCYDSEC 96
           PNG    F AFW+E  + WL   C  + C
Sbjct: 87  PNGHELKFDAFWVEKKTEWLRVKCDGNIC 115

[Close]

BLAST of Cla012991 vs. NCBI nr
Match: gi|778726822|ref|XP_004139670.2| (PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-24
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK 66
           L+ W+IH+ N LS+GQ L VHCKSKD+ LGE  LS G+EF W FKVN W+TTLFWCYL+K
Sbjct: 27  LSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWNFKVNIWDTTLFWCYLRK 86

Query: 67  PNGLHSSFKAFWIESTSVWLYDMCYDSEC 96
           P G    F+AFW+E  + WL   C  + C
Sbjct: 87  PKGDQVRFEAFWVEKKTRWLRVKCDGNIC 115

[Close]

BLAST of Cla012991 vs. NCBI nr
Match: gi|659123189|ref|XP_008461539.1| (PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 54/91 (59.34%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 7   LAKWQIHVVNRLSNGQILLVHCKSKDNYLGEHKLSV-GSEFNWRFKVNFWNTTLFWCYLQ 66
           L KW IHVVN L N Q L VHCKSKD+ LG H LS  G E  W FKVNF+ TTLFWCYL+
Sbjct: 32  LPKWHIHVVNGLRN-QTLFVHCKSKDDDLGNHTLSTKGQEVQWTFKVNFFGTTLFWCYLK 91

Query: 67  KPNGLHSSFKAFWIESTSVWLYDMCYDSECI 97
           KPN  + +F++FW+E T  WL   C+D  CI
Sbjct: 92  KPN-FYVAFESFWVEKTHPWLTSRCFDKNCI 120

The following BLAST results are available for this feature:

BLAST of Cla012991 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6N8_CUCSA	3.1e-24	57.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1	[more]
V4VUI1_9ROSI	7.2e-21	54.02	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1	[more]
V4TTV3_9ROSI	1.8e-19	61.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
M5VWE5_PRUPE	8.9e-19	48.86	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S...	[more]
A0A0D2R918_GOSRA	4.4e-18	52.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224500 PE=4 SV=1	[more]

BLAST of Cla012991 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124369\|ref\|XP_008462123.1\|	9.4e-30	62.92	PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo]	[more]
gi\|778730341\|ref\|XP_011659760.1\|	8.2e-26	59.55	PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus]	[more]
gi\|659116359\|ref\|XP_008458036.1\|	3.5e-24	57.30	PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo]	[more]
gi\|778726822\|ref\|XP_004139670.2\|	4.5e-24	57.30	PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus]	[more]
gi\|659123189\|ref\|XP_008461539.1\|	1.1e-22	59.34	PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012991	Cla012991.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 11..81 score: 3.4
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 9..78 score: 2.1
None	No IPR available	PANTHER	PTHR31232:SF7	S PROTEIN HOMOLOGUE 74-RELATED	coord: 9..78 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012991	Cucumber (Gy14) v2	cgybwmB100
Cla012991	Silver-seed gourd	carwmB0417
Cla012991	Silver-seed gourd	carwmB1054
Cla012991	Cucumber (Chinese Long) v3	cucwmB114
Cla012991	Watermelon (97103) v2	wmwmbB043
Cla012991	Wax gourd	wgowmB354
Cla012991	Cucumber (Gy14) v1	cgywmB580
Cla012991	Cucurbita maxima (Rimu)	cmawmB510
Cla012991	Cucurbita maxima (Rimu)	cmawmB549
Cla012991	Cucurbita moschata (Rifu)	cmowmB503
Cla012991	Cucurbita moschata (Rifu)	cmowmB541
Cla012991	Wild cucumber (PI 183967)	cpiwmB107
Cla012991	Melon (DHL92) v3.5.1	mewmB087
Cla012991	Watermelon (Charleston Gray)	wcgwmB009
Cla012991	Cucumber (Chinese Long) v2	cuwmB102
Cla012991	Cucurbita pepo (Zucchini)	cpewmB274
Cla012991	Cucurbita pepo (Zucchini)	cpewmB686
Cla012991	Bottle gourd (USVL1VR-Ls)	lsiwmB044