Cla012989 (gene) Watermelon (97103) v1

Overview
NameCla012989
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSelf-incompatibility protein (Fragment) (AHRD V1 *-*- C7FE82_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
LocationChr9 : 22534558 .. 22536002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGCAAATGGAAACGAGGCGTATGAAAAAGCAGTGTGTGGTGTTATTGGGATTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTGCGGAGCTTGCAAAATGGCAAATCCGTGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACATAAGCTTAGTGTTGGATCTGAATTCAATTGGAAATTTAAAGTAAACTTTTGGAATACCACATTATTTTGGTGTTACCTGCAGAAGCCGAATGGACTACGTTCGTCATTCGAAGCCTTTTGGATTGAGAGCACATCGGTTTGGCTCTATGATATGTGCTACGATTCTAACTGCATTTGGATAGCAAAAGATGACGGAATTTATTTGAAGGACAACACTAATCAAAAAGATGTTTTGATCGTAAGTGGGAATAATTATGCACCAACAACACATCACTCCATTATTATATGTGGCTTGTTGGGATTAATATATATGGTATTTATTAATATAAAGAAAGGTTTTGATGCTCACATCTTGTTTTTCTTTCGGTTTATAAATTATTGCACAAGTTTATTTTTGTTTCTAGTTTTTCTTTCCCATGATATTAATCTAAGAGAAATATAGTTTACTAAATCTCAAACTAATCTCTCTTGAAATCTAATTCGACGAGTGAACAAGTTTCAAAGAAGTTAATTAAGCAAAGGGTAGGAGAATCTTAATAAAGTTTCTACTTCACAAGTTTTGAAATGTAGTATTTCCTTGGATTTAATATTAATAAGTCCATAATCTTATTCTTTCACATATATTAACCAAAACTTTTTTAATGAGTTTTAATCAGAAAAGAAATTGAGAATGAAGACGAAAAATAAAGAAAAGAGAAGTGACCATAGTTTTAAATCGGTAATTGATTGTATTATAGCCACTTTTTATAGATTAGTTAGCTAGTTTGAGACTTCTATCTTCGAAAAGAGTAACATAATTTTGTATAAAAATTAAATTAAAAATTGTCCTCATCAAGTGATCCTTTTGTTATTAAGCCTTGGTTAGATTTTTTCCATATGGGTTTCAATGATCATGTCACACCCCGCCCCGGGTTACTTCCCCCGCAGCCCGAGACGGAGTGTGAGGACAATAGATATCGACCCTCTTGCAATGTTTACCGTCAAACCCTACCTTTCCCGAAACTACCATATGCAACCTATACAGGTATAGCCAAACTCATCAAGATAGTCAACGATTCACACACATCTAGACTTCTATGTGCGCACATAGTTCCTACTACTTACCATCAGGGCTTAGGAGCTAAGCCCGTCAACCCTCTAACCATCCCACGAGGAAAATCCGCGCTACAGACTCAGGAACTAGGTCCGTTTGACCCCTTGACCATTCTGTGCGGTAACAAGTCCCGGTCCACTCACGACCGTCAACAATAA

mRNA sequence

ATGATGAAGCAAATGGAAACGAGGCGTATGAAAAAGCAGTGTGTGGTGTTATTGGGATTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTGCGGAGCTTGCAAAATGGCAAATCCGTGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACATAAGCTTAGTGTTGGATCTGAATTCAATTGGAAATTTAAAGTAAACTTTTGGAATACCACATTATTTTGGTGTTACCTGCAGAAGCCGAATGGACTACGTTCGTCATTCGAAGCCTTTTGGATTGAGAGCACATCGGTTTGGCTCTATGATATGTGCTACGATTCTAACTGCATTTGGATAGCAAAAGATGACGGAATTTATTTGAAGGACAACACTAATCAAAAAGATGTTTTGATCCCCGAGACGGAGTGTGAGGACAATAGATATCGACCCTCTTGCAATGTTTACCGTCAAACCCTACCTTTCCCGAAACTACCATATGCAACCTATACAGGTATAGCCAAACTCATCAAGATAGTCAACGATTCACACACATCTAGACTTCTATGTGCGCACATAGTTCCTACTACTTACCATCAGGGCTTAGGAGCTAAGCCCGTCAACCCTCTAACCATCCCACGAGGAAAATCCGCGCTACAGACTCAGGAACTAGGTCCGTTTGACCCCTTGACCATTCTGTGCGGTAACAAGTCCCGGTCCACTCACGACCGTCAACAATAA

Coding sequence (CDS)

ATGATGAAGCAAATGGAAACGAGGCGTATGAAAAAGCAGTGTGTGGTGTTATTGGGATTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTGCGGAGCTTGCAAAATGGCAAATCCGTGTTGTGAATCGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACATAAGCTTAGTGTTGGATCTGAATTCAATTGGAAATTTAAAGTAAACTTTTGGAATACCACATTATTTTGGTGTTACCTGCAGAAGCCGAATGGACTACGTTCGTCATTCGAAGCCTTTTGGATTGAGAGCACATCGGTTTGGCTCTATGATATGTGCTACGATTCTAACTGCATTTGGATAGCAAAAGATGACGGAATTTATTTGAAGGACAACACTAATCAAAAAGATGTTTTGATCCCCGAGACGGAGTGTGAGGACAATAGATATCGACCCTCTTGCAATGTTTACCGTCAAACCCTACCTTTCCCGAAACTACCATATGCAACCTATACAGGTATAGCCAAACTCATCAAGATAGTCAACGATTCACACACATCTAGACTTCTATGTGCGCACATAGTTCCTACTACTTACCATCAGGGCTTAGGAGCTAAGCCCGTCAACCCTCTAACCATCCCACGAGGAAAATCCGCGCTACAGACTCAGGAACTAGGTCCGTTTGACCCCTTGACCATTCTGTGCGGTAACAAGTCCCGGTCCACTCACGACCGTCAACAATAA

Protein sequence

MMKQMETRRMKKQCVVLLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWKFKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLKDNTNQKDVLIPETECEDNRYRPSCNVYRQTLPFPKLPYATYTGIAKLIKIVNDSHTSRLLCAHIVPTTYHQGLGAKPVNPLTIPRGKSALQTQELGPFDPLTILCGNKSRSTHDRQQ
Homology
[Close]
BLAST of Cla012989 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.3e-33
Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 17  LLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWK 76
           LL  L ++ L    +  L+ W+I + N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLKDN 136
           FKVN W+TTLFWCYL+KP G +  FEAFW+E  + WL   C  + C WIA+D GIYLKDN
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKCDGNICNWIAEDTGIYLKDN 129

Query: 137 TNQKD 142
           +  +D
Sbjct: 130 STNED 134

[Close]
BLAST of Cla012989 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 65/150 (43.33%), Postives = 91/150 (60.67%), Query Frame = 1 

Query: 10  MKKQCVVLLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSV 69
           ++   V ++ +L LA+           W + VVN LSN Q L +HCKSKD+DLGEHKL+ 
Sbjct: 4   LRLNLVAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTT 63

Query: 70  GSEFNWKFKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDD 129
           G+E NWKFK NF+ TTLFWC+L+KP+   ++F+ FW E    +    C   +CIW AKD+
Sbjct: 64  GTESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNED---FFQFRCRYKDCIWTAKDE 123

Query: 130 GIYLKDNTNQKDVLIPETECEDNRYRPSCN 160
           GIYLK+    +D L  + +      +P CN
Sbjct: 124 GIYLKNIPEGRDELWQKWK------QPPCN 144

[Close]
BLAST of Cla012989 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-28
Identity = 69/145 (47.59%), Postives = 85/145 (58.62%), Query Frame = 1 

Query: 15  VVLLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFN 74
           VV+  +L LA+           W + VVN LSN Q LLVHCKSKD+DLGEH L+ G+EF 
Sbjct: 13  VVVTVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFA 72

Query: 75  WKFKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLK 134
           WKFK NF+ TTLFWCYL+K +   + F  FW E    +    C   NCIWIAK +GIYLK
Sbjct: 73  WKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKED---FFQFRCRYKNCIWIAKVEGIYLK 132

Query: 135 DNTNQKDVLIPETECEDNRYRPSCN 160
           +     D L  E +      +P CN
Sbjct: 133 NIPEGHDELWHEWK------QPPCN 148

[Close]
BLAST of Cla012989 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.7e-25
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1 

Query: 36  KWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWKFKVNFWNTTLFWCYLQKPN 95
           KW + VVN L  G+ L  HCKSKD+DLGE  L+ G+EFNW FK NF+ TTL+WCY+   +
Sbjct: 18  KWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYM-STD 77

Query: 96  GLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLKDNTNQKD 142
              ++ + FW+E    WL   C   +CIWIAKDDGIY+K     +D
Sbjct: 78  QKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIPENRD 122

[Close]
BLAST of Cla012989 vs. TrEMBL
Match: A0A0D2U1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 62/138 (44.93%), Postives = 79/138 (57.25%), Query Frame = 1 

Query: 13  QCVVLLGLLCLAVLEETKAAE---------LAKWQIRVVNRLSNGQILLVHCKSKDNDLG 72
           Q + +  L+ L+  E  K               W I  VN LS  Q LLVHCKSKD+DLG
Sbjct: 15  QAIAITSLITLSSSEPNKGGHDNSPWIHPWFKTWHIYAVNGLSQDQTLLVHCKSKDDDLG 74

Query: 73  EHKLSVGSEFNWKFKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCI 132
            H L+VGSEF WKF+  F+  TLFWCY+   N L +SF+AFW       LY++C    C 
Sbjct: 75  IHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDN-LHASFKAFWDNQA---LYNVCDWGTCF 134

Query: 133 WIAKDDGIYLKDNTNQKD 142
           WIAKDDGIY+++    +D
Sbjct: 135 WIAKDDGIYIRNIPKNRD 148

[Close]
BLAST of Cla012989 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 80/149 (53.69%), Postives = 108/149 (72.48%), Query Frame = 1 

Query: 2   MKQMETRRMKKQCVVLLGLLCLAV--LEETKAAELAKWQIRVVNRLSNGQILLVHCKSKD 61
           +K M+T R   + VVLL ++ + V  +E+ + A L KW + V+N L+  Q LLVHCKSKD
Sbjct: 3   VKNMKTTR---EMVVLLMVVLMFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKD 62

Query: 62  NDLGEHKLSVGSEFNWKFKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYD 121
           NDLGEH ++VGSE+NW F++N + TTLFWC L+KPNG  +SFEAFW+E TS+WLY  C +
Sbjct: 63  NDLGEHSVNVGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRCLE 122

Query: 122 SNCIWIAKDDGIYLKDNTNQKDVLIPETE 149
           S C W AKDDGIYL +N ++  +LI + E
Sbjct: 123 SKCYWHAKDDGIYLANNPDKTQLLIHKWE 148

[Close]
BLAST of Cla012989 vs. NCBI nr
Match: gi|778730341|ref|XP_011659760.1| (PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 3.9e-35
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1 

Query: 17  LLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWK 76
           LL  L ++ L   ++  L+ W+I + N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALARSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLKDN 136
           FKVN W+TTLFWCYL+KPNG +  F+AFW+E  + WL   CY + C WIA+D+GIYLKDN
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGDQVRFDAFWVEKKTEWLRVKCYGNICNWIAEDNGIYLKDN 129

Query: 137 TNQKDVLI 145
           +  ++  I
Sbjct: 130 STNEEEFI 137

[Close]
BLAST of Cla012989 vs. NCBI nr
Match: gi|778726822|ref|XP_004139670.2| (PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 4.8e-33
Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 17  LLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWK 76
           LL  L ++ L    +  L+ W+I + N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLKDN 136
           FKVN W+TTLFWCYL+KP G +  FEAFW+E  + WL   C  + C WIA+D GIYLKDN
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKCDGNICNWIAEDTGIYLKDN 129

Query: 137 TNQKD 142
           +  +D
Sbjct: 130 STNED 134

[Close]
BLAST of Cla012989 vs. NCBI nr
Match: gi|659123189|ref|XP_008461539.1| (PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = 1 

Query: 5   METRRMKKQCVVLLGLLCLAVLEETKAAELA--KWQIRVVNRLSNGQILLVHCKSKDNDL 64
           M  + M+    +LL L+ + +++ + A  L   KW I VVN L N Q L VHCKSKD+DL
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRN-QTLFVHCKSKDDDL 60

Query: 65  GEHKLSV-GSEFNWKFKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSN 124
           G H LS  G E  W FKVNF+ TTLFWCYL+KPN    +FE+FW+E T  WL   C+D N
Sbjct: 61  GNHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPN-FYVAFESFWVEKTHPWLTSRCFDKN 120

Query: 125 CIWIAKDDGIYLKDNTNQKDVLI 145
           CIWIAKDDGIYL++N    D L+
Sbjct: 121 CIWIAKDDGIYLRNNLTNVDELV 141

[Close]
BLAST of Cla012989 vs. NCBI nr
Match: gi|659116359|ref|XP_008458036.1| (PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 1 

Query: 17  LLGLLCLAVLEETKAAELAKWQIRVVNRLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWK 76
           LL  L ++ L    +  L+ W+I + N LSNGQ L V CKSKD+DLG+  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALAHSKPLSSWEIHIKNGLSNGQALFVQCKSKDSDLGKQTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLRSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLKDN 136
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  + WL   C  + C W  +D+GIYLKDN
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGHELKFDAFWVEKKTEWLRVKCDGNICNWTVEDNGIYLKDN 129

Query: 137 TNQKDVLI 145
           +  +D  I
Sbjct: 130 STNEDEFI 137

The following BLAST results are available for this feature:
BLAST of Cla012989 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6N8_CUCSA3.3e-3354.40Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1[more]
V4VUI1_9ROSI1.4e-2843.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1[more]
V4TTV3_9ROSI7.2e-2847.59Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1[more]
M5VWE5_PRUPE5.7e-2550.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S... [more]
A0A0D2U1W3_GOSRA2.2e-2444.93Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1[more]
BLAST of Cla012989 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124369|ref|XP_008462123.1|1.5e-3953.69PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo][more]
gi|778730341|ref|XP_011659760.1|3.9e-3553.91PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus][more]
gi|778726822|ref|XP_004139670.2|4.8e-3354.40PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus][more]
gi|659123189|ref|XP_008461539.1|1.8e-3252.45PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo][more]
gi|659116359|ref|XP_008458036.1|1.8e-3251.56PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012989Cla012989.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 39..140
score: 1.4
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 15..143
score: 4.9
NoneNo IPR availablePANTHERPTHR31232:SF7S PROTEIN HOMOLOGUE 74-RELATEDcoord: 15..143
score: 4.9