Cla012986 (gene) Watermelon (97103) v1

Overview
NameCla012986
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSelf-incompatibility protein (Fragment) (AHRD V1 ***- C7FE82_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
LocationChr9 : 22428088 .. 22428534 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGCAAATGGAAACGAGGCGTACGAAAAAGCAGTGTGTGGTGTTGTTGCTATTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTGCGGAGCTTGCAAAATGGCAGATCCATGTTGTGAACCAGCTAAGCAATGGCCAAATCCTATTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCAATTGGAGATTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACTTGCAAAAGCCAAATGGACTACATTCGTCATTCGAAGCCTTTTGGATTGAGAGCACATCGGTTTGGCTCTATGATATGTGCTACGATTCTAACTGTATTTGGATAGCTAAAGATGATGGAATTTATTTGAGGGACGACACTAATCAAAAAGATGTTTTGATTCATAAGTGGGAATAA

mRNA sequence

ATGATGAAGCAAATGGAAACGAGGCGTACGAAAAAGCAGTGTGTGGTGTTGTTGCTATTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTGCGGAGCTTGCAAAATGGCAGATCCATGTTGTGAACCAGCTAAGCAATGGCCAAATCCTATTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCAATTGGAGATTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACTTGCAAAAGCCAAATGGACTACATTCGTCATTCGAAGCCTTTTGGATTGAGAGCACATCGGTTTGGCTCTATGATATGTGCTACGATTCTAACTGTATTTGGATAGCTAAAGATGATGGAATTTATTTGAGGGACGACACTAATCAAAAAGATGTTTTGATTCATAAGTGGGAATAA

Coding sequence (CDS)

ATGATGAAGCAAATGGAAACGAGGCGTACGAAAAAGCAGTGTGTGGTGTTGTTGCTATTGTTGTGTTTGGCAGTGCTTGAAGAAACCAAGGCTGCGGAGCTTGCAAAATGGCAGATCCATGTTGTGAACCAGCTAAGCAATGGCCAAATCCTATTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCAATTGGAGATTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACTTGCAAAAGCCAAATGGACTACATTCGTCATTCGAAGCCTTTTGGATTGAGAGCACATCGGTTTGGCTCTATGATATGTGCTACGATTCTAACTGTATTTGGATAGCTAAAGATGATGGAATTTATTTGAGGGACGACACTAATCAAAAAGATGTTTTGATTCATAAGTGGGAATAA

Protein sequence

MMKQMETRRTKKQCVVLLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDDTNQKDVLIHKWE
Homology
[Close]
BLAST of Cla012986 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-36
Identity = 70/132 (53.03%), Postives = 91/132 (68.94%), Query Frame = 1 

Query: 17  LLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWR 76
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDD 136
           FKVN W+TTLFWCYL+KP G    FEAFW+E  + WL   C  + C WIA+D GIYL+D+
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKCDGNICNWIAEDTGIYLKDN 129

Query: 137 TNQKDVLIHKWE 149
           +  +D  IH W+
Sbjct: 130 STNEDERIHYWK 141

[Close]
BLAST of Cla012986 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.0e-31
Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1 

Query: 15  VVLLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFN 74
           V ++++L LA+           W +HVVN LSN Q L +HCKSKD+DLGEHKL+ G+E N
Sbjct: 9   VAVIVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTGTESN 68

Query: 75  WRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLR 134
           W+FK NF+ TTLFWC+L+KP+   ++F+ FW E    +    C   +CIW AKD+GIYL+
Sbjct: 69  WKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNED---FFQFRCRYKDCIWTAKDEGIYLK 128

Query: 135 DDTNQKDVLIHKWE 149
           +    +D L  KW+
Sbjct: 129 NIPEGRDELWQKWK 139

[Close]
BLAST of Cla012986 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1 

Query: 15  VVLLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFN 74
           VV+ ++L LA+           W +HVVN LSN Q LLVHCKSKD+DLGEH L+ G+EF 
Sbjct: 13  VVVTVVLALAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFA 72

Query: 75  WRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLR 134
           W+FK NF+ TTLFWCYL+K +   + F  FW E    +    C   NCIWIAK +GIYL+
Sbjct: 73  WKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKED---FFQFRCRYKNCIWIAKVEGIYLK 132

Query: 135 DDTNQKDVLIHKWE 149
           +     D L H+W+
Sbjct: 133 NIPEGHDELWHEWK 143

[Close]
BLAST of Cla012986 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 36  KWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPN 95
           KW +HVVN L  G+ L  HCKSKD+DLGE  L+ G+EFNW FK NF+ TTL+WCY+   +
Sbjct: 18  KWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYM-STD 77

Query: 96  GLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDDTNQKDVLIHKWE 149
             H++ + FW+E    WL   C   +CIWIAKDDGIY++     +D   HKWE
Sbjct: 78  QKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIPENRDEFSHKWE 129

[Close]
BLAST of Cla012986 vs. TrEMBL
Match: A0A0D2U1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 1 

Query: 37  WQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNG 96
           W I+ VN LS  Q LLVHCKSKD+DLG H L+VGSEF W+F+  F+  TLFWCY+   N 
Sbjct: 48  WHIYAVNGLSQDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDN- 107

Query: 97  LHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDDTNQKDVLIHKWE 149
           LH+SF+AFW       LY++C    C WIAKDDGIY+R+    +D     WE
Sbjct: 108 LHASFKAFWDNQA---LYNVCDWGTCFWIAKDDGIYIRNIPKNRDDYYCNWE 155

[Close]
BLAST of Cla012986 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 4.2e-45
Identity = 81/146 (55.48%), Postives = 112/146 (76.71%), Query Frame = 1 

Query: 5   METRRTKKQCVVLLLLLCLAV--LEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDL 64
           ++  +T ++ VVLL+++ + V  +E+ + A L KW +HV+N L+  Q LLVHCKSKDNDL
Sbjct: 3   VKNMKTTREMVVLLMVVLMFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKDNDL 62

Query: 65  GEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNC 124
           GEH ++VGSE+NW F++N + TTLFWC L+KPNG H+SFEAFW+E TS+WLY  C +S C
Sbjct: 63  GEHSVNVGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRCLESKC 122

Query: 125 IWIAKDDGIYLRDDTNQKDVLIHKWE 149
            W AKDDGIYL ++ ++  +LIHKWE
Sbjct: 123 YWHAKDDGIYLANNPDKTQLLIHKWE 148

[Close]
BLAST of Cla012986 vs. NCBI nr
Match: gi|778730341|ref|XP_011659760.1| (PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 8.5e-38
Identity = 70/132 (53.03%), Postives = 95/132 (71.97%), Query Frame = 1 

Query: 17  LLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWR 76
           LL+ L ++ L   ++  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALARSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDD 136
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  + WL   CY + C WIA+D+GIYL+D+
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGDQVRFDAFWVEKKTEWLRVKCYGNICNWIAEDNGIYLKDN 129

Query: 137 TNQKDVLIHKWE 149
           +  ++  IH W+
Sbjct: 130 STNEEEFIHYWK 141

[Close]
BLAST of Cla012986 vs. NCBI nr
Match: gi|659123189|ref|XP_008461539.1| (PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 79/135 (58.52%), Postives = 92/135 (68.15%), Query Frame = 1 

Query: 17  LLLLLCLAVLEETKAA---ELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSV-GSE 76
           LLL+L   VL +   A    L KW IHVVN L N Q L VHCKSKD+DLG H LS  G E
Sbjct: 12  LLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRN-QTLFVHCKSKDDDLGNHTLSTKGQE 71

Query: 77  FNWRFKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY 136
             W FKVNF+ TTLFWCYL+KPN  + +FE+FW+E T  WL   C+D NCIWIAKDDGIY
Sbjct: 72  VQWTFKVNFFGTTLFWCYLKKPN-FYVAFESFWVEKTHPWLTSRCFDKNCIWIAKDDGIY 131

Query: 137 LRDDTNQKDVLIHKW 148
           LR++    D L+H W
Sbjct: 132 LRNNLTNVDELVHPW 144

[Close]
BLAST of Cla012986 vs. NCBI nr
Match: gi|778726822|ref|XP_004139670.2| (PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.0e-35
Identity = 70/132 (53.03%), Postives = 91/132 (68.94%), Query Frame = 1 

Query: 17  LLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWR 76
           LL+ L ++ L    +  L+ W+IH+ N LS+GQ L VHCKSKD+DLGE  LS G+EF W 
Sbjct: 10  LLVFLAVSTLALVCSKPLSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDD 136
           FKVN W+TTLFWCYL+KP G    FEAFW+E  + WL   C  + C WIA+D GIYL+D+
Sbjct: 70  FKVNIWDTTLFWCYLRKPKGDQVRFEAFWVEKKTRWLRVKCDGNICNWIAEDTGIYLKDN 129

Query: 137 TNQKDVLIHKWE 149
           +  +D  IH W+
Sbjct: 130 STNEDERIHYWK 141

[Close]
BLAST of Cla012986 vs. NCBI nr
Match: gi|659116359|ref|XP_008458036.1| (PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 67/132 (50.76%), Postives = 90/132 (68.18%), Query Frame = 1 

Query: 17  LLLLLCLAVLEETKAAELAKWQIHVVNQLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWR 76
           LL+ L ++ L    +  L+ W+IH+ N LSNGQ L V CKSKD+DLG+  LS G+EF W 
Sbjct: 10  LLVFLVVSTLALAHSKPLSSWEIHIKNGLSNGQALFVQCKSKDSDLGKQTLSTGAEFKWN 69

Query: 77  FKVNFWNTTLFWCYLQKPNGLHSSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDD 136
           FKVN W+TTLFWCYL+KPNG    F+AFW+E  + WL   C  + C W  +D+GIYL+D+
Sbjct: 70  FKVNIWDTTLFWCYLRKPNGHELKFDAFWVEKKTEWLRVKCDGNICNWTVEDNGIYLKDN 129

Query: 137 TNQKDVLIHKWE 149
           +  +D  IH W+
Sbjct: 130 STNEDEFIHYWK 141

The following BLAST results are available for this feature:
BLAST of Cla012986 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6N8_CUCSA7.2e-3653.03Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1[more]
V4VUI1_9ROSI7.0e-3147.01Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1[more]
V4TTV3_9ROSI2.0e-3049.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1[more]
M5VWE5_PRUPE1.7e-2951.33Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S... [more]
A0A0D2U1W3_GOSRA1.0e-2653.57Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1[more]
BLAST of Cla012986 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124369|ref|XP_008462123.1|4.2e-4555.48PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo][more]
gi|778730341|ref|XP_011659760.1|8.5e-3853.03PREDICTED: uncharacterized protein LOC105436265 [Cucumis sativus][more]
gi|659123189|ref|XP_008461539.1|2.1e-3658.52PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo][more]
gi|778726822|ref|XP_004139670.2|1.0e-3553.03PREDICTED: uncharacterized protein LOC101212063 [Cucumis sativus][more]
gi|659116359|ref|XP_008458036.1|3.0e-3550.76PREDICTED: uncharacterized protein LOC103497573 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012986Cla012986.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 38..147
score: 1.0
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 15..148
score: 5.3
NoneNo IPR availablePANTHERPTHR31232:SF7S PROTEIN HOMOLOGUE 74-RELATEDcoord: 15..148
score: 5.3