Cla012979 (gene) Watermelon (97103) v1

NameCla012979
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B0WXD2_CULQU)
LocationChr9 : 22156826 .. 22158592 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACGTCAAACGTAGGCTTGCAAGGTATGCCAAATGTTACTTGCTCATTGAACATGTGCAAATATACTTCAAATATTTGCTATGCTTAACCAACACATATAGTAATGCTAAATTAACTCCAAGGCAACAAATCAATCAACATATTTAGCTGCAATGCGTACTGAACATGTCAATCAACCTCTTAGCTCATACAAGCCTTGATCTTCAATGAATATAAGTTTGGAAGGCCAAAATACAACATAAGAGAAATGAAATATAGAGAAAATAGAGGGGAAGTGGAGAGGAGGCTAAAGATTTCTTGGTGTTGGGGTGTTCTTTCATCTAATGTCGAAGGGTCTCTTTTATAGAGTCTCGAGAGCACTATGGCGCTAAGGATGGCTCTGTGGCACTATCCCTTTCCTTAAATTTCTTTTTTCTTTATTTGCAGCAGTGCTGCAATGCTCTTGGTAGTGCCGCAGTTCTAAGGGACAACACCGCGACGCTTCTTGAAACTTCAGCTACTGCCTTCAATGCCATGGATGGTGCTACACGGTGCTGTGGCAAAGGTGCATCCACGGTCATTTTCTCCTTCATTTGACCTAGTTTCCTCTTTTGGGCTTTACGCTTTAGTTTCAATTAAGCTTGGTTTTTGTCCAAATCTCAATTCTACCACCTTATTGCCGGAGACCTACAGAATCATCAAATAAACACATAAAGTACACAAACAAACTTGAATTAAACTGAGTCAGATAGTACATTTTAGGTGTTATCATTGGTCTTCTAGTGAAATAAAGGAGAGTTTCCTGTTGGCTGTTCCTGATGGTTTTTCATTGGTATGGCACTTTAGCATTTGTGTTCACTGCAAAAATATTTTTATTGTTAATCTTCCAATATTTGTCTTCTGCAGGTCTACATATGCAACAACCATACGTGATTCTAAATATGGCCGTGAGAGAGAATTTCTTAAAGCTGTATGTATAAATTAATTAATAAAATTATTTTCCCGGATTTGCCTTTTCTGCGCCTTCAAGGTTTTTTTAGAAATTGGATAAGTTGATTTTTCATTCATGTTATGCGTTCTGGTATAATAATAATTCAGGAGCCAGGAGGACATCATTAAGGTATATTGAAGTTGCATCATGTTCCAAGTACAACTTGGCATATTGGTGATATTAGGGATAGACTTCAGAATGATATATTTTATGTCCCTCGGTGAAGAAAAGAAAATATTCTGTTTTGTTTTAGGGTTTATTTTGTGATGGTTCAAGACTGTAGGTTGGTTGATGCCTTTTTGTGTAGGATATTGCATGTCATAGCTGTAGACTAACTAATCATAGTTGAGGACTGTGATATAATATAGAAACTGGTTACGACTTATGAGTGGCTATTGAGCATTGGTTGGTGACTTAAATCCGTCATAAACTCTTAATTGTTCAAGAGATACTGAATTATTTTAACTTTAAAATTTATAACTTATAGCAATGGAATTATTTGAAACATGATCGTTTTCCCGAATGATTTGATATAGGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGTACTTTACTGAATATTGGGTGTGGCTTTTAAATCTTTTACTGCCATCTGCATCTCTCATGACTAATTTGCTCTTGTTATATATAAAACTTTCCATTATGAACAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGTATGAGTCTGAAGGTTCCGATATACTATTCAGCAGGTCCCTTTGAATAA

mRNA sequence

ATGAAAAACGTCAAACGTAGGCTTGCAAGGAGCCAGGAGGACATCATTAAGGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGTATGAGTCTGAAGGTTCCGATATACTATTCAGCAGGTCCCTTTGAATAA

Coding sequence (CDS)

ATGAAAAACGTCAAACGTAGGCTTGCAAGGAGCCAGGAGGACATCATTAAGGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGTATGAGTCTGAAGGTTCCGATATACTATTCAGCAGGTCCCTTTGAATAA

Protein sequence

MKNVKRRLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAGPFE
BLAST of Cla012979 vs. Swiss-Prot
Match: CPS3B_ARATH (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-17
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1

Query: 10  RSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R +E +  VH CVA GGK LIP+FALGRAQELC+LLDDYWERM++KVPIY+S+G
Sbjct: 216 REREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSG 269

BLAST of Cla012979 vs. Swiss-Prot
Match: INT11_HUMAN (Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 10  RSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R ++ + KVH  V  GGKVLIP FALGRAQELCILL+ +WERM+LKVPIY+S G
Sbjct: 217 RERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTG 270

BLAST of Cla012979 vs. Swiss-Prot
Match: INT11_MOUSE (Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 10  RSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R ++ + KVH  V  GGKVLIP FALGRAQELCILL+ +WERM+LKVPIY+S G
Sbjct: 217 RERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTG 270

BLAST of Cla012979 vs. Swiss-Prot
Match: INT11_RAT (Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 10  RSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R ++ + KVH  V  GGKVLIP FALGRAQELCILL+ +WERM+LKVPIY+S G
Sbjct: 217 RERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTG 270

BLAST of Cla012979 vs. Swiss-Prot
Match: INT11_PONAB (Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 10  RSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R ++ + KVH  V  GGKVLIP FALGRAQELCILL+ +WERM+LKVPIY+S G
Sbjct: 217 RERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTG 270

BLAST of Cla012979 vs. TrEMBL
Match: B9HVV0_POPTR (Metallo-beta-lactamase family protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CVA GGKVLIPTFALGRAQELCILLDDYWERM+LKVPIY+SAG
Sbjct: 213 KYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 269

BLAST of Cla012979 vs. TrEMBL
Match: U5G1X1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CVA GGKVLIPTFALGRAQELCILLDDYWERM+LKVPIY+SAG
Sbjct: 52  KYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 108

BLAST of Cla012979 vs. TrEMBL
Match: M0SCM1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CVA GGKVLIPTFALGRAQELCILLDDYWERM+LKVPIY+SAG
Sbjct: 224 KYAREREFLRAVHKCVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 280

BLAST of Cla012979 vs. TrEMBL
Match: A0A061E8Z1_THECC (Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma cacao GN=TCM_011055 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R  R +E +  VHNCVA+GGKVLIPTFALGRAQELCILL+DYWERM+LKVPIY+S+G
Sbjct: 212 RYGREREFLKAVHNCVAAGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSSG 268

BLAST of Cla012979 vs. TrEMBL
Match: A0A0A0LQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VHNC+ASGGKVLIPTFALGRAQELC+LLDDYWERM+LK PIY SAG
Sbjct: 213 KYAREREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

BLAST of Cla012979 vs. NCBI nr
Match: gi|823255818|ref|XP_012460570.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Gossypium raimondii])

HSP 1 Score: 97.4 bits (241), Expect = 9.7e-18
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           R  R +E +  VHNCVA+GGKVLIPTFALGRAQELCILL+DYWERM+LKVPIY+SAG
Sbjct: 212 RYGREREFLKAVHNCVAAGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSAG 268

BLAST of Cla012979 vs. NCBI nr
Match: gi|566190304|ref|XP_002314781.2| (metallo-beta-lactamase family protein [Populus trichocarpa])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CVA GGKVLIPTFALGRAQELCILLDDYWERM+LKVPIY+SAG
Sbjct: 213 KYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 269

BLAST of Cla012979 vs. NCBI nr
Match: gi|743822724|ref|XP_011021767.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Populus euphratica])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CVA GGKVLIPTFALGRAQELCILLDDYWERM+LKVPIY+SAG
Sbjct: 185 KYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 241

BLAST of Cla012979 vs. NCBI nr
Match: gi|695009560|ref|XP_009391419.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Musa acuminata subsp. malaccensis])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CVA GGKVLIPTFALGRAQELCILLDDYWERM+LKVPIY+SAG
Sbjct: 213 KYAREREFLRAVHKCVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 269

BLAST of Cla012979 vs. NCBI nr
Match: gi|1021027988|gb|KZM85775.1| (hypothetical protein DCAR_026803 [Daucus carota subsp. sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 7   RLARSQEDIIKVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYYSAG 64
           + AR +E +  VH CV +GGKVLIPTFALGRAQELCILLDDYWERMSLKVPIY+SAG
Sbjct: 213 KYAREREFLDAVHKCVTNGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYFSAG 269

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CPS3B_ARATH2.8e-1772.22Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal... [more]
INT11_HUMAN7.6e-1568.52Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2[more]
INT11_MOUSE7.6e-1568.52Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=1 SV=1[more]
INT11_RAT7.6e-1568.52Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1[more]
INT11_PONAB7.6e-1568.52Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2[more]
Match NameE-valueIdentityDescription
B9HVV0_POPTR1.1e-1778.95Metallo-beta-lactamase family protein OS=Populus trichocarpa GN=POPTR_0010s11650... [more]
U5G1X1_POPTR1.1e-1778.95Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=1[more]
M0SCM1_MUSAM1.1e-1778.95Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A061E8Z1_THECC1.5e-1777.19Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma c... [more]
A0A0A0LQW3_CUCSA2.6e-1777.19Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|823255818|ref|XP_012460570.1|9.7e-1878.95PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Gossypi... [more]
gi|566190304|ref|XP_002314781.2|1.6e-1778.95metallo-beta-lactamase family protein [Populus trichocarpa][more]
gi|743822724|ref|XP_011021767.1|1.6e-1778.95PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ... [more]
gi|695009560|ref|XP_009391419.1|1.6e-1778.95PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Musa ac... [more]
gi|1021027988|gb|KZM85775.1|1.6e-1778.95hypothetical protein DCAR_026803 [Daucus carota subsp. sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001279Metallo-B-lactamas
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010197 polar nucleus fusion
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU57878watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012979Cla012979.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU57878WMU57878transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001279Metallo-beta-lactamaseGENE3DG3DSA:3.60.15.10coord: 9..52
score: 5.
IPR001279Metallo-beta-lactamaseunknownSSF56281Metallo-hydrolase/oxidoreductasecoord: 17..61
score: 3.16
NoneNo IPR availablePANTHERPTHR11203CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTORcoord: 5..63
score: 9.5
NoneNo IPR availablePANTHERPTHR11203:SF37INTEGRATOR COMPLEX SUBUNIT 11coord: 5..63
score: 9.5