Cla012930 (gene) Watermelon (97103) v1

Overview
NameCla012930
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDynamin-related protein 3B (AHRD V1 *-*- F4IFG2_ARATH); contains Interpro domain(s) IPR003130 Dynamin GTPase effector
LocationChr9 : 21206869 .. 21207641 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGGAGCCCGATGAAGTCGCAATGAAGAGAAAGCGTACTAGGGAAACTCTCCGTGTACTTCAGCAGGCTTTTCGGGTATGGTTTTCCTGGCCACCTGACAAGTGCCGGTGCTTGCATCTTGATATGATGAAAGATCTTTCGTGATGGCAACTATTCACCGTTACAATAACATAAAATAAAATAACCATTCGGAGGATGAGTTCTATAAGAGAGTAGGTACATGAAAGGGCGAAAGAAAGAAAGGGGAAAAAAAAGAATAATATTTGATCCCATCTCATAAGAGATGGGATGAATCTCACAAGAGATAAAGGGGTTGGGTAATAAAGCATCTAGACAGATGAATTCATAATCATCGTAATTAGATGAACTTGTTCATAGAACAAAAAAACTAGGAGTTTCCAGACCGTAAACATTCAAAAAAGCTAGGAGTTCCCATTGAAATAAATTGTTGAGTTCAGTTCGCTGTTTGTTGACATCAGCATGCATGAAGTTCTGTGAAAATATCATCTTTTCAATGATTGCAGACATTGGATGAATTACCTCTGGAGGCTGAAACAGTTGAAAAGGGATACAATATGGGTGCTGATCCAACGGGATTACCGAGGATCCATGGACTGCCAACATCGTCAATGTATTCTACATCCAGTTCCAGTGATTCATATTCTGCTTCTCCAAGGCATCTGAAATCCCGTAAGTCGTCTCATTCAGGGGAACTCTTGTCTCCATTCCATCATAATGCTGATTCTAATGGAAGTGGATTCCCATAA

mRNA sequence

ATGTTGCAGGAGCCCGATGAAGTCGCAATGAAGAGAAAGCGTACTAGGGAAACTCTCCGTGTACTTCAGCAGGCTTTTCGGACATTGGATGAATTACCTCTGGAGGCTGAAACAGTTGAAAAGGGATACAATATGGGTGCTGATCCAACGGGATTACCGAGGATCCATGGACTGCCAACATCGTCAATGTATTCTACATCCAGTTCCAGTGATTCATATTCTGCTTCTCCAAGGCATCTGAAATCCCGTAAGTCGTCTCATTCAGGGGAACTCTTGTCTCCATTCCATCATAATGCTGATTCTAATGGAAGTGGATTCCCATAA

Coding sequence (CDS)

ATGTTGCAGGAGCCCGATGAAGTCGCAATGAAGAGAAAGCGTACTAGGGAAACTCTCCGTGTACTTCAGCAGGCTTTTCGGACATTGGATGAATTACCTCTGGAGGCTGAAACAGTTGAAAAGGGATACAATATGGGTGCTGATCCAACGGGATTACCGAGGATCCATGGACTGCCAACATCGTCAATGTATTCTACATCCAGTTCCAGTGATTCATATTCTGCTTCTCCAAGGCATCTGAAATCCCGTAAGTCGTCTCATTCAGGGGAACTCTTGTCTCCATTCCATCATAATGCTGATTCTAATGGAAGTGGATTCCCATAA

Protein sequence

MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPTSSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSGFP
Homology
[Close]
BLAST of Cla012930 vs. Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-16
Identity = 55/106 (51.89%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDE+A+KRKRT+ETL VLQQA+RTLDELPLEA++V           G+ +   L T
Sbjct: 725 MLQEPDEIAVKRKRTQETLHVLQQAYRTLDELPLEADSVS---------AGMSKHQELLT 784

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSGF 107
           SS YSTSS   SYSASP    +R+S  +G+           NG GF
Sbjct: 785 SSKYSTSS---SYSASPS--TTRRSRRAGD--------QHQNGYGF 808

[Close]
BLAST of Cla012930 vs. Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGAD 49
           +L+EPDE+A+KRKRT+ETLR+LQQA RTLDELPLEAE+VE+GY +G++
Sbjct: 709 LLKEPDELAIKRKRTQETLRILQQANRTLDELPLEAESVERGYKIGSE 756

[Close]
BLAST of Cla012930 vs. TrEMBL
Match: M5VIB3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001399mg PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.7e-45
Identity = 93/105 (88.57%), Postives = 101/105 (96.19%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGY++GADPTGLP+IHGLPT
Sbjct: 721 MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYSLGADPTGLPKIHGLPT 780

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSG 106
           SSMY+TSSS+DSYSASP++ K RKSSHSGEL SPF+ NADSNGSG
Sbjct: 781 SSMYNTSSSNDSYSASPKNPKPRKSSHSGELHSPFYANADSNGSG 825

[Close]
BLAST of Cla012930 vs. TrEMBL
Match: B9T3E4_RICCO (Dynamin, putative OS=Ricinus communis GN=RCOM_0449340 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.0e-41
Identity = 84/107 (78.50%), Postives = 97/107 (90.65%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEP+E+AMKRKRTRETLR+LQQA++TLDELPLEAETVE+GY++GADPTGLP+IHGLPT
Sbjct: 720 MLQEPEEIAMKRKRTRETLRILQQAYKTLDELPLEAETVERGYSLGADPTGLPKIHGLPT 779

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSGFP 108
           SS+YSTSS S  YSASP++ KSRKSSHSGEL S F+ NADSNG   P
Sbjct: 780 SSLYSTSSGSSDYSASPKNPKSRKSSHSGELQSHFYVNADSNGGSRP 826

[Close]
BLAST of Cla012930 vs. TrEMBL
Match: A0A061E0U7_THECC (Dynamin-related protein 3A isoform 1 OS=Theobroma cacao GN=TCM_007356 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.0e-41
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDE+A KRKRTRETLRVLQQAFRTLDELPLEAETVE+GY++G+DPTGLP+IHGLPT
Sbjct: 709 MLQEPDEIATKRKRTRETLRVLQQAFRTLDELPLEAETVERGYSLGSDPTGLPKIHGLPT 768

Query: 61  SSMYSTSS-SSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSG 106
           SSMYSTSS S+DSY+ SP++ KSRKSSHSGEL S  + NADSNGSG
Sbjct: 769 SSMYSTSSGSNDSYAVSPKNTKSRKSSHSGELQSHLYGNADSNGSG 814

[Close]
BLAST of Cla012930 vs. TrEMBL
Match: A0A061E114_THECC (Dynamin-related protein 3A isoform 2 OS=Theobroma cacao GN=TCM_007356 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.0e-41
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDE+A KRKRTRETLRVLQQAFRTLDELPLEAETVE+GY++G+DPTGLP+IHGLPT
Sbjct: 710 MLQEPDEIATKRKRTRETLRVLQQAFRTLDELPLEAETVERGYSLGSDPTGLPKIHGLPT 769

Query: 61  SSMYSTSS-SSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSG 106
           SSMYSTSS S+DSY+ SP++ KSRKSSHSGEL S  + NADSNGSG
Sbjct: 770 SSMYSTSSGSNDSYAVSPKNTKSRKSSHSGELQSHLYGNADSNGSG 815

[Close]
BLAST of Cla012930 vs. TrEMBL
Match: V4SDI7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027825mg PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-40
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEP+EVAMKRKRTR+TLRVLQQAFRTLDELPLEA++VE+GYNM ADPTGLP+IHGLPT
Sbjct: 709 MLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEADSVERGYNMSADPTGLPKIHGLPT 768

Query: 61  SSMYSTSS-SSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSG 106
           SSMY+TSS S+DSY+ASP++ KSRKSSHSGEL S    NADSNGSG
Sbjct: 769 SSMYTTSSGSNDSYTASPKNPKSRKSSHSGELQSHLFSNADSNGSG 814

[Close]
BLAST of Cla012930 vs. NCBI nr
Match: gi|659110249|ref|XP_008455128.1| (PREDICTED: dynamin-related protein 3A-like isoform X1 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 5.9e-49
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLE ETVEKGYN+GADPTGLPRIHGLPT
Sbjct: 706 MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLETETVEKGYNVGADPTGLPRIHGLPT 765

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSGF 107
           SSMYSTSSS DSYSASPRHLKSRKSSHSGELLS FH NADSNG+GF
Sbjct: 766 SSMYSTSSSGDSYSASPRHLKSRKSSHSGELLSTFHPNADSNGNGF 811

[Close]
BLAST of Cla012930 vs. NCBI nr
Match: gi|659110253|ref|XP_008455130.1| (PREDICTED: dynamin-related protein 3A-like isoform X3 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 5.9e-49
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLE ETVEKGYN+GADPTGLPRIHGLPT
Sbjct: 674 MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLETETVEKGYNVGADPTGLPRIHGLPT 733

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSGF 107
           SSMYSTSSS DSYSASPRHLKSRKSSHSGELLS FH NADSNG+GF
Sbjct: 734 SSMYSTSSSGDSYSASPRHLKSRKSSHSGELLSTFHPNADSNGNGF 779

[Close]
BLAST of Cla012930 vs. NCBI nr
Match: gi|778724560|ref|XP_011658828.1| (PREDICTED: dynamin-related protein 3A isoform X1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 8.5e-48
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLE ETVEKGY++GADPTGLPRIHGLPT
Sbjct: 707 MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLETETVEKGYSVGADPTGLPRIHGLPT 766

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSGF 107
           SSMYSTSSS DSYSASPRHLKSRKSSHSGELLS FH NADS+G+GF
Sbjct: 767 SSMYSTSSSGDSYSASPRHLKSRKSSHSGELLSTFHPNADSHGNGF 812

[Close]
BLAST of Cla012930 vs. NCBI nr
Match: gi|694384882|ref|XP_009368315.1| (PREDICTED: dynamin-related protein 3A-like [Pyrus x bretschneideri])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEA+TVEKGY++GADPTGLP+IHGLPT
Sbjct: 720 MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEADTVEKGYSLGADPTGLPKIHGLPT 779

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSG 106
           SSMY+TSSS DSYSASPR+ KSRKSSHSGEL SPF+ NADSNGSG
Sbjct: 780 SSMYNTSSSHDSYSASPRNAKSRKSSHSGELHSPFYSNADSNGSG 824

[Close]
BLAST of Cla012930 vs. NCBI nr
Match: gi|645263445|ref|XP_008237240.1| (PREDICTED: dynamin-related protein 3A [Prunus mume])

HSP 1 Score: 188.3 bits (477), Expect = 6.7e-45
Identity = 93/105 (88.57%), Postives = 101/105 (96.19%), Query Frame = 1 

Query: 1   MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNMGADPTGLPRIHGLPT 60
           MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGY++GADPTGLP+IHGLPT
Sbjct: 720 MLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYSLGADPTGLPKIHGLPT 779

Query: 61  SSMYSTSSSSDSYSASPRHLKSRKSSHSGELLSPFHHNADSNGSG 106
           SSMY+TSSS+DSYSASP++ K RKSSHSGEL SPF+ NADSNGSG
Sbjct: 780 SSMYNTSSSNDSYSASPKNPKPRKSSHSGELHSPFYANADSNGSG 824

The following BLAST results are available for this feature:
BLAST of Cla012930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRP3A_ARATH5.0e-1651.89Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2[more]
DRP3B_ARATH1.4e-1372.92Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2[more]
BLAST of Cla012930 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VIB3_PRUPE4.7e-4588.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001399mg PE=3 SV=1[more]
B9T3E4_RICCO7.0e-4178.50Dynamin, putative OS=Ricinus communis GN=RCOM_0449340 PE=3 SV=1[more]
A0A061E0U7_THECC7.0e-4182.08Dynamin-related protein 3A isoform 1 OS=Theobroma cacao GN=TCM_007356 PE=3 SV=1[more]
A0A061E114_THECC7.0e-4182.08Dynamin-related protein 3A isoform 2 OS=Theobroma cacao GN=TCM_007356 PE=3 SV=1[more]
V4SDI7_9ROSI2.7e-4082.08Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027825mg PE=3 SV=1[more]
BLAST of Cla012930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110249|ref|XP_008455128.1|5.9e-4994.34PREDICTED: dynamin-related protein 3A-like isoform X1 [Cucumis melo][more]
gi|659110253|ref|XP_008455130.1|5.9e-4994.34PREDICTED: dynamin-related protein 3A-like isoform X3 [Cucumis melo][more]
gi|778724560|ref|XP_011658828.1|8.5e-4892.45PREDICTED: dynamin-related protein 3A isoform X1 [Cucumis sativus][more]
gi|694384882|ref|XP_009368315.1|1.4e-4589.52PREDICTED: dynamin-related protein 3A-like [Pyrus x bretschneideri][more]
gi|645263445|ref|XP_008237240.1|6.7e-4588.57PREDICTED: dynamin-related protein 3A [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020850GED_dom
IPR022812Dynamin_SF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0008017 microtubule binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU50965watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012930Cla012930.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU50965WMU50965transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020850GTPase effector domainPROFILEPS51388GEDcoord: 1..37
score: 12
IPR022812Dynamin superfamilyPANTHERPTHR11566DYNAMINcoord: 1..53
score: 1.3
NoneNo IPR availablePANTHERPTHR11566:SF75DYNAMIN-RELATED PROTEIN 3A-RELATEDcoord: 1..53
score: 1.3