Cla012854 (gene) Watermelon (97103) v1

Overview
NameCla012854
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084
LocationChr9 : 19528239 .. 19528430 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGGCTTTACCCGCAATCACCTCTACGGTTGGGGGATTCGAATGGTGGAATGAAATTGATGAATCTGAGGATTGGCAGAAAGGGATTTACTACGCCTTGTCCGCCTCTTATGCCCTCATCTCCCTCATTGCCTTAGTACTCTACTTTTCTCTTTTCCTTACTGTCTTTTTGTCCTGTATCTTCTGA

mRNA sequence

ATGGCAAGGGCTTTACCCGCAATCACCTCTACGGTTGGGGGATTCGAATGGTGGAATGAAATTGATGAATCTGAGGATTGGCAGAAAGGGATTTACTACGCCTTGTCCGCCTCTTATGCCCTCATCTCCCTCATTGCCTTAGTACTCTACTTTTCTCTTTTCCTTACTGTCTTTTTGTCCTGTATCTTCTGA

Coding sequence (CDS)

ATGGCAAGGGCTTTACCCGCAATCACCTCTACGGTTGGGGGATTCGAATGGTGGAATGAAATTGATGAATCTGAGGATTGGCAGAAAGGGATTTACTACGCCTTGTCCGCCTCTTATGCCCTCATCTCCCTCATTGCCTTAGTACTCTACTTTTCTCTTTTCCTTACTGTCTTTTTGTCCTGTATCTTCTGA

Protein sequence

MARALPAITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALVLYFSLFLTVFLSCIF
Homology
[Close]
BLAST of Cla012854 vs. Swiss-Prot
Match: TOM1_TOBAC (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-06
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1 

Query: 17 WWNEIDESEDWQKGIYYALSASYALISLIALVLYFSLFLTV 58
          WW++I+ES  WQ GI+Y+L ASYAL+S +AL+    + L V
Sbjct: 20 WWDQINESVQWQDGIFYSLCASYALVSAVALIQLIRIELRV 60

[Close]
BLAST of Cla012854 vs. TrEMBL
Match: A0A0A0K5Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062880 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.6e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 1  MARALPAITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALV 49
          MARAL  ITST+GGF+ WNEID+S+ WQKGIYYALSASYALISLIALV
Sbjct: 1  MARALSTITSTLGGFQLWNEIDDSDHWQKGIYYALSASYALISLIALV 48

[Close]
BLAST of Cla012854 vs. TrEMBL
Match: A0A068TMH6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014792001 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-08
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 15 FEWWNEIDESEDWQKGIYYALSASYALISLIALVLYFSLFLTV 58
          F+WWNEI ESE WQ+G+YY LSASYAL+SL+ALV    + L V
Sbjct: 29 FDWWNEIQESEKWQRGLYYTLSASYALVSLVALVQLIRIQLRV 71

[Close]
BLAST of Cla012854 vs. TrEMBL
Match: D7TR60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00460 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-08
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 8  ITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALVLYFSL 54
          I +  G F+WW EIDESE WQ+GI+Y L ASYAL+S+IALV  F +
Sbjct: 13 IETESGDFDWWKEIDESEQWQQGIFYTLCASYALVSMIALVQLFRI 58

[Close]
BLAST of Cla012854 vs. TrEMBL
Match: B9SIP7_RICCO (Virion binding protein, putative OS=Ricinus communis GN=RCOM_0824990 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-06
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 17 WWNEIDESEDWQKGIYYALSASYALISLIALVLYFSLFLTV 58
          WW+EIDE+E+WQ+GI+Y L ASYAL+S++ALV  F + L V
Sbjct: 30 WWDEIDETEEWQEGIFYFLCASYALVSIVALVQLFRIQLRV 70

[Close]
BLAST of Cla012854 vs. TrEMBL
Match: A0A0R0IP73_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G072000 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 

Query: 12 VGGFEWWNEIDESEDWQKGIYYALSASYALISLIALV 49
          VG  +WWN+ID+S+ WQ+G YYAL A+Y L+S +ALV
Sbjct: 16 VGALQWWNQIDDSDQWQRGTYYALCAAYTLVSFVALV 52

[Close]
BLAST of Cla012854 vs. NCBI nr
Match: gi|659110386|ref|XP_008455199.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-14
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 1  MARALPAITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALV 49
          MARAL  ITST GGF+WWNEID+SE WQKGIYY L+ASYA+ISLIALV
Sbjct: 1  MARALSTITSTAGGFQWWNEIDDSEHWQKGIYYTLAASYAIISLIALV 48

[Close]
BLAST of Cla012854 vs. NCBI nr
Match: gi|449438197|ref|XP_004136876.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 1  MARALPAITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALV 49
          MARAL  ITST+GGF+ WNEID+S+ WQKGIYYALSASYALISLIALV
Sbjct: 1  MARALSTITSTLGGFQLWNEIDDSDHWQKGIYYALSASYALISLIALV 48

[Close]
BLAST of Cla012854 vs. NCBI nr
Match: gi|661899452|emb|CDO97446.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-08
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 15 FEWWNEIDESEDWQKGIYYALSASYALISLIALVLYFSLFLTV 58
          F+WWNEI ESE WQ+G+YY LSASYAL+SL+ALV    + L V
Sbjct: 29 FDWWNEIQESEKWQRGLYYTLSASYALVSLVALVQLIRIQLRV 71

[Close]
BLAST of Cla012854 vs. NCBI nr
Match: gi|296086834|emb|CBI32983.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-08
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 8  ITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALVLYFSL 54
          I +  G F+WW EIDESE WQ+GI+Y L ASYAL+S+IALV  F +
Sbjct: 13 IETESGDFDWWKEIDESEQWQQGIFYTLCASYALVSMIALVQLFRI 58

[Close]
BLAST of Cla012854 vs. NCBI nr
Match: gi|731435294|ref|XP_002268725.2| (PREDICTED: tobamovirus multiplication protein 1-like [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-08
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 8  ITSTVGGFEWWNEIDESEDWQKGIYYALSASYALISLIALVLYFSL 54
          I +  G F+WW EIDESE WQ+GI+Y L ASYAL+S+IALV  F +
Sbjct: 53 IETESGDFDWWKEIDESEQWQQGIFYTLCASYALVSMIALVQLFRI 98

The following BLAST results are available for this feature:
BLAST of Cla012854 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TOM1_TOBAC4.7e-0651.22Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1[more]
BLAST of Cla012854 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5Z8_CUCSA9.6e-1483.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062880 PE=4 SV=1[more]
A0A068TMH6_COFCA3.5e-0865.12Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014792001 PE=4 SV=1[more]
D7TR60_VITVI3.5e-0860.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00460 PE=4 SV=... [more]
B9SIP7_RICCO1.1e-0660.98Virion binding protein, putative OS=Ricinus communis GN=RCOM_0824990 PE=4 SV=1[more]
A0A0R0IP73_SOYBN1.9e-0659.46Uncharacterized protein OS=Glycine max GN=GLYMA_08G072000 PE=4 SV=1[more]
BLAST of Cla012854 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110386|ref|XP_008455199.1|2.8e-1481.25PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis melo][more]
gi|449438197|ref|XP_004136876.1|1.4e-1383.33PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis sativus... [more]
gi|661899452|emb|CDO97446.1|5.1e-0865.12unnamed protein product [Coffea canephora][more]
gi|296086834|emb|CBI32983.3|5.1e-0860.87unnamed protein product [Vitis vinifera][more]
gi|731435294|ref|XP_002268725.2|5.1e-0860.87PREDICTED: tobamovirus multiplication protein 1-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009457DUF1084
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU28566watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012854Cla012854.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU28566WMU28566transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009457Domain of unknown function DUF1084PFAMPF06454DUF1084coord: 16..57
score: 1.
NoneNo IPR availablePANTHERPTHR31142FAMILY NOT NAMEDcoord: 7..48
score: 4.9
NoneNo IPR availablePANTHERPTHR31142:SF5SUBFAMILY NOT NAMEDcoord: 7..48
score: 4.9