Cla012827 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012827
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	26S proteasome non-ATPase regulatory subunit 8 (AHRD V1 **** B4FR70_MAIZE); contains Interpro domain(s) IPR006746 26S proteasome non-ATPase regulatory subunit Rpn12
Location	Chr7 : 27089069 .. 27091864 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGAAGCTAACTGAGGTATCGCAGCACTTCGAGCGCTTTAAAGCTGCTCTTGTTAGGCACGATTATGATTCTTGTAACAATCTCCTCTCTCAGCTGAAGGTACACGATTTTATTTCAGAACCCTAATGTTTCTCCCAATTACTCCTCCGTTCACTACGTCACTCTAGTTTCAGCCTGTTTTCTTCTTGTCTTGAGGAGTTTTGGTTTTCTGATTATTTTTATTTTTATTTTTATTTTTTCATTTTCTATTTGCAGGTTCTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACCCCCAATGCTGTTCATGAATTGACGGTAGCTAGTAAGAATGTCACGCCGTACTCTATGCCCTAGTTTGTAGCTCTTATTTGCGGGCCTATATTTTTCTGTGTGAATAATTTGCTGTCGCCTGGATCTTGAAATTTGTATCTTCATAGTTCATAATATCAGATGAAGACTTTTATTTGTGTGGAACTTGCTAATTGTTGTTCACTTTCATTATTTGTGACTGTAAACTACCTCCCGTACTAAAAGCTTAAGCTATTAGATTAAGTTAAATTTAACTTTTTTAAAAAAAGATAAAAATGGTTGCCTAAAATGGTAAGATTATAATTCCCATTGTAGAAGTTAGATAACCAATACCATACTTGATGAAAATTTGAACATTTCAATGAGCTATTGAACCAATTTTACTCAGAAATAACGAGTGCGAAATATGGTATATGAATTTCATAAATTGATTAACTATCTAATAAAAGTTGGAGAAACGCAGGAACTACACCACTTGGTCATGAGTGAATAATTTAGGCCCTGTTCAATAAGACTTTCATTTTTAGTTTTTTGTCTTTAGAATTTATGCTTGTTTCCTTCGATTTACTTACCATAGTTTTCACATTTCTCAAAGAACATTTGAATTCTTGATCAAATTCTAAAAACAAAAACAAGTTTTTAAAAACTACTTTTAAAATTTTTTTAGTTTTCAAAACTTGGGTTGGTTTTTGAAAACATTGGTAGAAAGTGATTACAAAACAAAGAAACTTATAAAGTGAGTAGAATTTACAATTGGGATATGATGAAGGTGCTATTGATGTGTTAACCTAGTTGAGATATCTTGGTGCACCTACTGATCTGTCTATCTTCTAGTATTTTGCTTAAAAAAATGTAGAATTTACAAGCTCAAGTTTAGAAACCAAAAAGTAATGGTTATTAAATGTGCCTACTTTCTGGATCATTGTATATGCTGATGTAGAATCTTCTATACATAAGAGTTTGTTATCTGCATGGGACTTTGGTTTTTTTTCCTTCCTGTATAGTCATTTTCTAAATCTGAATACACTTTTTTTAATTGTTTACTTGGGGTCTTCAGGGGATATATATGAGCATGCTGTGTTGCTTAGTGTGAAGGTTGAGGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGGTATGTTTCTTTTTCTAAACGAAAGTGAAATTTGAATTTCTGTAGTCTATCTATATTATTTAGGTCTTTTATTATCATGATATATTGCTTCTTTATTTTAGATTTGGGGGGGGATTTTATATTCTTCAGTCAGTGTCTTCGGTTTGTTTTTCTTTAACTCATCAAAGGCCCTTACCTTGAAGCTCAGGATAAAATTCTTTGGTCCATTGATGTCTTTGTTTTTTTAGGAATTGGGGGGTGGGGGAGGCTTTGGTTTCAAAAAAATTCCAGAACTTTTCATGCTCAAGAAACGAACAAGAATGGTTTTTAGGATCTGCTTACTCCTTTTGCATCTACTTGGTCCTCTTTTTTTCTTTTTTCTTTTTTTTTTTTTACCTTTTCTTTAATTATGTCCTAATGCTGATTCACACAAGTTATCGGCCTTTATTTTGTAACCTGTTGGTGTGGACATATCTCATCTCCACCTCCTTTTGTATTTCTCTTTTTTTATAATAAAAGTTATGTTTCCTATTTAAAAAAGAAGGAAAATTTATGTTAAATGCCGTGAGTTAAATGACTCCTTTTCGAAAGATAAAGAGTCTGTGGAATGGTGTAGTAAGATAAAGAGGAAAATAGTATGGTTTTATTGGAGTTCTATTGAATAATTTGATTGAAGCAAAATTATTGTCAATGACAAAAGCTACATATTGATATTATTTGCAATCATAGCTCATTTAGTTCGGCAGTATTCGGCTTTATTTCAATATGTTATCTTTCTTCTTTCATGTTAATGAGTTGATTTAATTCGATTGAACTGCTTTCATGAGATGGTTGACTGACAATGAATTGCAGCAGAGTAACAAATGGATCCTAACTTATCAGGAAAACACCTTCTATGAGTTCTCTTGAGATTCAAAACTGATTTATATAATTTTAGGCTGAGCATCATGTGGTTCCATCTTGCATTTTACCTGAATTCCCACATTGAGATTACTTGATGTTACATGAGTTTGAACTTTTGGGTACAAATTTTTCTCATGAAAGTTTGTTTTCTTGGAGCAGTAACCGCCTTCCTCCATCCGCTCAGGAGCATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAACAGAATTGCTGAATTCCATACTGAACTTGAACTACTTTCCACCTCTGCTTTGGAGAACCCATGCATTAAACATGCTGTGGAGCTGGAGCAATCGTTTATGGAAGGGGCTTACAACCGTGTGTTGAGTGCTCGACAGACCGTGCCACATGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGGTAA

mRNA sequence

ATGGATCCGAAGCTAACTGAGGTATCGCAGCACTTCGAGCGCTTTAAAGCTGCTCTTGTTAGGCACGATTATGATTCTTGTAACAATCTCCTCTCTCAGCTGAAGGTTCTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACCCCCAATGCTGTTCATGAATTGACGGTAGCTAGGGATATATATGAGCATGCTGTGTTGCTTAGTGTGAAGGTTGAGGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGTAACCGCCTTCCTCCATCCGCTCAGGAGCATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAACAGAATTGCTGAATTCCATACTGAACTTGAACTACTTTCCACCTCTGCTTTGGAGAACCCATGCATTAAACATGCTGTGGAGCTGGAGCAATCGTTTATGGAAGGGGCTTACAACCGTGTGTTGAGTGCTCGACAGACCGTGCCACATGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGGTAA

Coding sequence (CDS)

ATGGATCCGAAGCTAACTGAGGTATCGCAGCACTTCGAGCGCTTTAAAGCTGCTCTTGTTAGGCACGATTATGATTCTTGTAACAATCTCCTCTCTCAGCTGAAGGTTCTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACCCCCAATGCTGTTCATGAATTGACGGTAGCTAGGGATATATATGAGCATGCTGTGTTGCTTAGTGTGAAGGTTGAGGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGTAACCGCCTTCCTCCATCCGCTCAGGAGCATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAACAGAATTGCTGAATTCCATACTGAACTTGAACTACTTTCCACCTCTGCTTTGGAGAACCCATGCATTAAACATGCTGTGGAGCTGGAGCAATCGTTTATGGAAGGGGCTTACAACCGTGTGTTGAGTGCTCGACAGACCGTGCCACATGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGGTAA

Protein sequence

MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTVARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQNRIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVR

Homology

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BLAST of Cla012827 vs. Swiss-Prot
Match: PSD8A_ARATH (26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.5e-81
Identity = 150/184 (81.52%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDP+LTEVSQ FERFKAA  R DY++C++LLSQLKVLLT F SLPPLFE++PNA  ELT+
Sbjct: 1   MDPQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVK EDQDAFERDFFQLKPYY DARNR+P S QE+ ILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENLILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS++ LE+PCIKHAVELEQSFMEGAYNRVLSARQT P  T+ YFMDLLA
Sbjct: 121 RIAEFHTELELLSSATLEDPCIKHAVELEQSFMEGAYNRVLSARQTAPDATYVYFMDLLA 180

Query: 181 KTVR 185
           KT+R
Sbjct: 181 KTIR 184

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BLAST of Cla012827 vs. Swiss-Prot
Match: PSD8B_ARATH (Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPN12B PE=5 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-40
Identity = 102/188 (54.26%), Postives = 118/188 (62.77%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDP+L EVSQ FERFKAA +  D+D+C++LLSQLK+      SL      + NA+  LT 
Sbjct: 1   MDPQLMEVSQQFERFKAAFIIKDFDTCSSLLSQLKLFDHYLISL------SLNALLLLTC 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLP----PSAQEHPILGLNLLRL 120
           A                             ++   RNR+P     +     I+GLNLLRL
Sbjct: 61  AL----------------------------FFLCTRNRIPPSPQENL----IMGLNLLRL 120

Query: 121 LVQNRIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFM 180
           LVQNRIAEFHTEL LLS++ LENPCIKHAVELEQSFMEGAYNRVLSARQT P ET+ YFM
Sbjct: 121 LVQNRIAEFHTELGLLSSATLENPCIKHAVELEQSFMEGAYNRVLSARQTAPDETYVYFM 150

Query: 181 DLLAKTVR 185
           DLLAKT+R
Sbjct: 181 DLLAKTIR 150

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BLAST of Cla012827 vs. Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=1 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 7.5e-28
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1


Query: 27  CNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTVARDIYEHAVLLSVKVEDQDAFERDFF 86
           C   L +LK++L     LP     T     +L +ARDI E     S+  +D  +FER   
Sbjct: 115 CGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMA 174

Query: 87  QLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQNRIAEFHTELELLSTSALE-NPCIKHA 146
           QLK YY D + +LP SA  H +LGLNLL LL QNR+AEFHTELE L    ++ N  IKH 
Sbjct: 175 QLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHP 234

Query: 147 VELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVR 185
           V LEQ  MEG+YN+V  A+  +P E++ +F+D+L  T+R
Sbjct: 235 VSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIR 271

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BLAST of Cla012827 vs. Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 7.5e-28
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1


Query: 27  CNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTVARDIYEHAVLLSVKVEDQDAFERDFF 86
           C   L +LK++L     LP     T     +L +ARDI E     S+  +D  +FER   
Sbjct: 51  CGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMA 110

Query: 87  QLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQNRIAEFHTELELLSTSALE-NPCIKHA 146
           QLK YY D + +LP SA  H +LGLNLL LL QNR+AEFHTELE L    ++ N  IKH 
Sbjct: 111 QLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHP 170

Query: 147 VELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVR 185
           V LEQ  MEG+YN+V  A+  +P E++ +F+D+L  T+R
Sbjct: 171 VSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIR 207

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BLAST of Cla012827 vs. Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-27
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1


Query: 27  CNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTVARDIYEHAVLLSVKVEDQDAFERDFF 86
           C   L +LK++L     LP     T     +L +ARDI E     S+  +D  +FER   
Sbjct: 49  CGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMA 108

Query: 87  QLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQNRIAEFHTELELLSTSALE-NPCIKHA 146
           QLK YY D + +LP SA  H +LGLNLL LL QNR+AEFHTELE L    ++ N  IKH 
Sbjct: 109 QLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHP 168

Query: 147 VELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVR 185
           V LEQ  MEG+YN+V  A+  +P E++ +F+D+L  T+R
Sbjct: 169 VSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIR 205

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BLAST of Cla012827 vs. TrEMBL
Match: A0A0A0KV58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G054300 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.2e-92
Identity = 171/182 (93.96%), Postives = 176/182 (96.70%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQHFERFKAALVRHDYDSC+NLLSQLKV LTGFRSLPPLFEDTPNAV ELT+
Sbjct: 1   MDPKLTEVSQHFERFKAALVRHDYDSCDNLLSQLKVFLTGFRSLPPLFEDTPNAVEELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           AR+IYEHAVLLSVKVEDQ AFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARNIYEHAVLLSVKVEDQGAFERDFFQLKPYYTDAHNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS SALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHET+GYFMDLLA
Sbjct: 121 RIAEFHTELELLSPSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYGYFMDLLA 180

Query: 181 KT 183
           KT
Sbjct: 181 KT 182

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BLAST of Cla012827 vs. TrEMBL
Match: V7CL94_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G197600g PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 7.0e-89
Identity = 164/184 (89.13%), Postives = 178/184 (96.74%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQ F+RFKA+ +R+DYD+C+NLLSQLKVLLTGFRSLPPLF DTPNAVHELT+
Sbjct: 1   MDPKLTEVSQLFDRFKASFLRNDYDNCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVK+EDQDAFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS++ALENPCIKHAVELEQSFMEGAYNRVLSARQTVPH+T+ YFMDLLA
Sbjct: 121 RIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

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BLAST of Cla012827 vs. TrEMBL
Match: A0A0L9T5Q5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan205s004400 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.6e-88
Identity = 164/184 (89.13%), Postives = 177/184 (96.20%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQ F+RFKA+ +R+DYD+C+NLLSQLKVLLTGFRSLPPLF DTPNAVHELT+
Sbjct: 1   MDPKLTEVSQLFDRFKASFLRNDYDNCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVK EDQDAFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS++ALENPCIKHAVELEQSFMEGAYNRVLSARQTVPH+T+ YFMDLLA
Sbjct: 121 RIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

[Close]

BLAST of Cla012827 vs. TrEMBL
Match: A0A0S3R0N9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G170500 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.6e-88
Identity = 164/184 (89.13%), Postives = 177/184 (96.20%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQ F+RFKA+ +R+DYD+C+NLLSQLKVLLTGFRSLPPLF DTPNAVHELT+
Sbjct: 1   MDPKLTEVSQLFDRFKASFLRNDYDNCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVK EDQDAFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS++ALENPCIKHAVELEQSFMEGAYNRVLSARQTVPH+T+ YFMDLLA
Sbjct: 121 RIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

[Close]

BLAST of Cla012827 vs. TrEMBL
Match: W9RWK4_9ROSA (26S proteasome non-ATPase regulatory subunit RPN12A OS=Morus notabilis GN=L484_007834 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 7.7e-88
Identity = 163/184 (88.59%), Postives = 177/184 (96.20%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQ FERFKAA++R D+++C NLLSQLKVLLT FRSLPPLFE+TPNAVHELT+
Sbjct: 93  MDPKLTEVSQLFERFKAAILRKDFNTCTNLLSQLKVLLTAFRSLPPLFEETPNAVHELTI 152

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVKVEDQDAFERDFFQLKPYYTDAR+R+PPS +E+PILGLNLLRLLVQN
Sbjct: 153 ARDIYEHAVVLSVKVEDQDAFERDFFQLKPYYTDARDRIPPSPEEYPILGLNLLRLLVQN 212

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS+ ALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHET+ YFMDLLA
Sbjct: 213 RIAEFHTELELLSSIALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYVYFMDLLA 272

Query: 181 KTVR 185
           KTVR
Sbjct: 273 KTVR 276

[Close]

BLAST of Cla012827 vs. NCBI nr
Match: gi|659102033|ref|XP_008451917.1| (PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Cucumis melo])

HSP 1 Score: 362.5 bits (929), Expect = 4.5e-97
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKV LTGFRSLPPLFEDTPNAVHELT+
Sbjct: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVFLTGFRSLPPLFEDTPNAVHELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHET+GYFMDLLA
Sbjct: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYGYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

[Close]

BLAST of Cla012827 vs. NCBI nr
Match: gi|778691132|ref|XP_004148986.2| (PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 173/184 (94.02%), Postives = 178/184 (96.74%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQHFERFKAALVRHDYDSC+NLLSQLKV LTGFRSLPPLFEDTPNAV ELT+
Sbjct: 1   MDPKLTEVSQHFERFKAALVRHDYDSCDNLLSQLKVFLTGFRSLPPLFEDTPNAVEELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           AR+IYEHAVLLSVKVEDQ AFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARNIYEHAVLLSVKVEDQGAFERDFFQLKPYYTDAHNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS SALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHET+GYFMDLLA
Sbjct: 121 RIAEFHTELELLSPSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYGYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

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BLAST of Cla012827 vs. NCBI nr
Match: gi|700198275|gb|KGN53433.1| (hypothetical protein Csa_4G054300 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 7.4e-92
Identity = 171/182 (93.96%), Postives = 176/182 (96.70%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQHFERFKAALVRHDYDSC+NLLSQLKV LTGFRSLPPLFEDTPNAV ELT+
Sbjct: 1   MDPKLTEVSQHFERFKAALVRHDYDSCDNLLSQLKVFLTGFRSLPPLFEDTPNAVEELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           AR+IYEHAVLLSVKVEDQ AFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARNIYEHAVLLSVKVEDQGAFERDFFQLKPYYTDAHNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS SALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHET+GYFMDLLA
Sbjct: 121 RIAEFHTELELLSPSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYGYFMDLLA 180

Query: 181 KT 183
           KT
Sbjct: 181 KT 182

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BLAST of Cla012827 vs. NCBI nr
Match: gi|1009173814|ref|XP_015868016.1| (PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Ziziphus jujuba])

HSP 1 Score: 335.1 bits (858), Expect = 7.7e-89
Identity = 167/184 (90.76%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQ FERFKAA VR D+++C N LSQLKVLLTGFRSLPPLFEDTPNAVHELT+
Sbjct: 1   MDPKLTEVSQLFERFKAAFVRKDFNTCENFLSQLKVLLTGFRSLPPLFEDTPNAVHELTL 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVKVEDQDAFERDFFQLKPYYTDARNRLP S QE+PILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVVLSVKVEDQDAFERDFFQLKPYYTDARNRLPQSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS++ALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHET+ YFMDLLA
Sbjct: 121 RIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYVYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

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BLAST of Cla012827 vs. NCBI nr
Match: gi|593791868|ref|XP_007158973.1| (hypothetical protein PHAVU_002G197600g [Phaseolus vulgaris])

HSP 1 Score: 334.7 bits (857), Expect = 1.0e-88
Identity = 164/184 (89.13%), Postives = 178/184 (96.74%), Query Frame = 1


Query: 1   MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTV 60
           MDPKLTEVSQ F+RFKA+ +R+DYD+C+NLLSQLKVLLTGFRSLPPLF DTPNAVHELT+
Sbjct: 1   MDPKLTEVSQLFDRFKASFLRNDYDNCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTI 60

Query: 61  ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQN 120
           ARDIYEHAV+LSVK+EDQDAFERDFFQLKPYYTDA NRLPPS QE+PILGLNLLRLLVQN
Sbjct: 61  ARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLA 180
           RIAEFHTELELLS++ALENPCIKHAVELEQSFMEGAYNRVLSARQTVPH+T+ YFMDLLA
Sbjct: 121 RIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLA 180

Query: 181 KTVR 185
           KTVR
Sbjct: 181 KTVR 184

The following BLAST results are available for this feature:

BLAST of Cla012827 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSD8A_ARATH	4.5e-81	81.52	26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana...	[more]
PSD8B_ARATH	6.6e-40	54.26	Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS=Arabidopsis...	[more]
PSMD8_MOUSE	7.5e-28	45.28	26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=1 SV=...	[more]
PSMD8_PONAB	7.5e-28	45.28	26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii GN=PSM...	[more]
PSMD8_BOVIN	1.3e-27	45.28	26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=3	[more]

BLAST of Cla012827 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV58_CUCSA	5.2e-92	93.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G054300 PE=4 SV=1	[more]
V7CL94_PHAVU	7.0e-89	89.13	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G197600g PE=4 SV=1	[more]
A0A0L9T5Q5_PHAAN	1.6e-88	89.13	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan205s004400 PE=4 SV=1	[more]
A0A0S3R0N9_PHAAN	1.6e-88	89.13	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G170500 PE=...	[more]
W9RWK4_9ROSA	7.7e-88	88.59	26S proteasome non-ATPase regulatory subunit RPN12A OS=Morus notabilis GN=L484_0...	[more]

BLAST of Cla012827 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102033\|ref\|XP_008451917.1\|	4.5e-97	97.28	PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Cucumis mel...	[more]
gi\|778691132\|ref\|XP_004148986.2\|	6.7e-93	94.02	PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Cucumis sat...	[more]
gi\|700198275\|gb\|KGN53433.1\|	7.4e-92	93.96	hypothetical protein Csa_4G054300 [Cucumis sativus]	[more]
gi\|1009173814\|ref\|XP_015868016.1\|	7.7e-89	90.76	PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Ziziphus ju...	[more]
gi\|593791868\|ref\|XP_007158973.1\|	1.0e-88	89.13	hypothetical protein PHAVU_002G197600g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006746	26S_Psome_Rpn12

Vocabulary: **Cellular Component**
Term	Definition
GO:0005838	proteasome regulatory particle

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005838	proteasome regulatory particle
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU39640	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012827	Cla012827.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU39640	WMU39640	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006746	26S proteasome non-ATPase regulatory subunit Rpn12	PANTHER	PTHR12387	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8	coord: 1..184 score: 3.5E
None	No IPR available	PANTHER	PTHR12387:SF0	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8	coord: 1..184 score: 3.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012827	Cla97C07G138150	Watermelon (97103) v2	wmwmbB173
Cla012827	Csa4G054300	Cucumber (Chinese Long) v2	cuwmB305
Cla012827	MELO3C016262	Melon (DHL92) v3.5.1	mewmB516
Cla012827	ClCG07G011380	Watermelon (Charleston Gray)	wcgwmB371
Cla012827	CSPI04G06610	Wild cucumber (PI 183967)	cpiwmB308
Cla012827	Cucsa.114760	Cucumber (Gy14) v1	cgywmB170
Cla012827	CmaCh04G005770	Cucurbita maxima (Rimu)	cmawmB685
Cla012827	CmoCh04G006160	Cucurbita moschata (Rifu)	cmowmB676
Cla012827	CmoCh16G005780	Cucurbita moschata (Rifu)	cmowmB308
Cla012827	Lsi07G007440	Bottle gourd (USVL1VR-Ls)	lsiwmB434
Cla012827	Cp4.1LG01g01390	Cucurbita pepo (Zucchini)	cpewmB412
Cla012827	CsGy4G006550	Cucumber (Gy14) v2	cgybwmB283
Cla012827	MELO3C016262.2	Melon (DHL92) v3.6.1	medwmB501
Cla012827	Carg13162	Silver-seed gourd	carwmB0047
Cla012827	Carg11439	Silver-seed gourd	carwmB0654
Cla012827	CsaV3_4G006830	Cucumber (Chinese Long) v3	cucwmB317
Cla012827	Bhi01G002334	Wax gourd	wgowmB197

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012827	Wax gourd	wgowmB183
Cla012827	Cucurbita maxima (Rimu)	cmawmB314
Cla012827	Cucurbita pepo (Zucchini)	cpewmB225
Cla012827	Silver-seed gourd	carwmB0043