Cla012820 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012820
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cellulose synthase-like protein G3 (AHRD V1 ***- CSLG3_ARATH)
Location	Chr7 : 26983545 .. 26983859 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCGGATGATTCCGGTCCGCCGCCGAGAGTTTCCAGAGCAGGTACGGAGGATCTCGATTTTCCGGCGGTGGATGTGTTCATTTACGACGGGTCGTTAGAAGGAGCTGCCGATGAGCGTGGTGAACTCGGTACTACCAGTTATGGCTTACGACTCTCCTTCTGGGAAGATCTCCGTCTATATCTCCGACGAGGCGGCTCCGCCTTGACTCTCTTTGCTTTGATGGCGGCGGCCGAGTTTGCTAGCCACTGGCTGCCGGTTTGCAATCAAAACGACGCCGTAGAGAGGAATCCTTTTTTCATCATCATCTAG

mRNA sequence

ATGTTTTCGGATGATTCCGGTCCGCCGCCGAGAGTTTCCAGAGCAGGTACGGAGGATCTCGATTTTCCGGCGGTGGATGTGTTCATTTACGACGGGTCGTTAGAAGGAGCTGCCGATGAGCGTGGTGAACTCGGTACTACCAGTTATGGCTTACGACTCTCCTTCTGGGAAGATCTCCGTCTATATCTCCGACGAGGCGGCTCCGCCTTGACTCTCTTTGCTTTGATGGCGGCGGCCGAGTTTGCTAGCCACTGGCTGCCGGTTTGCAATCAAAACGACGCCGTAGAGAGGAATCCTTTTTTCATCATCATCTAG

Coding sequence (CDS)

ATGTTTTCGGATGATTCCGGTCCGCCGCCGAGAGTTTCCAGAGCAGGTACGGAGGATCTCGATTTTCCGGCGGTGGATGTGTTCATTTACGACGGGTCGTTAGAAGGAGCTGCCGATGAGCGTGGTGAACTCGGTACTACCAGTTATGGCTTACGACTCTCCTTCTGGGAAGATCTCCGTCTATATCTCCGACGAGGCGGCTCCGCCTTGACTCTCTTTGCTTTGATGGCGGCGGCCGAGTTTGCTAGCCACTGGCTGCCGGTTTGCAATCAAAACGACGCCGTAGAGAGGAATCCTTTTTTCATCATCATCTAG

Protein sequence

MFSDDSGPPPRVSRAGTEDLDFPAVDVFIYDGSLEGAADERGELGTTSYGLRLSFWEDLRLYLRRGGSALTLFALMAAAEFASHWLPVCNQNDAVERNPFFIII

Homology

[Close]

BLAST of Cla012820 vs. Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 35/89 (39.33%), Postives = 45/89 (50.56%), Query Frame = 1


Query: 18  EDLDFPAVDVFIYDGSLEGAADERGELGTTSYGLRLSFW------EDLRLYLRR-GGSAL 77
           E  DFP +DVFI        AD   E         LS        + + +Y+   GGS+L
Sbjct: 113 EPEDFPKLDVFIC------TADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSL 172

Query: 78  TLFALMAAAEFASHWLPVCNQNDAVERNP 100
           TLFALM AA+F+ HWLP C +N+  +R+P
Sbjct: 173 TLFALMEAAKFSKHWLPFCKKNNVQDRSP 195

[Close]

BLAST of Cla012820 vs. Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-06
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 21  DFPAVDVFIYDGSLEGAADERGE--LGTTSYGLRLSFWE----DLRLYLRR-GGSALTLF 80
           DFP +DVFI        AD   E  +   +  L +  +E     + +Y+   GGS+LTLF
Sbjct: 94  DFPKLDVFIC------TADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLF 153

Query: 81  ALMAAAEFASHWLPVCNQNDAVERNP 100
           ALM AA+F+ HWLP C  N+  +R+P
Sbjct: 154 ALMEAAKFSKHWLPFCKNNNVQDRSP 173

[Close]

BLAST of Cla012820 vs. TrEMBL
Match: A0A0A0KZW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G053250 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 9   PPRVSRAGTEDLDFPAVDVFIYDGSLEGAADE---RGELGTTSYGLRLSFWEDLRLYLRR 68
           P ++ R   ED DFPAVDVFI     E           L   +Y   +     + +Y+  
Sbjct: 95  PQKLKRVA-EDSDFPAVDVFICTTDPEKEPPMSVVNSVLSVMAYDYPVG---KISVYISD 154

Query: 69  -GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
            GGSALTLFAL AAA+FA HWLP CN+N+ VERNP
Sbjct: 155 DGGSALTLFALTAAAKFAKHWLPFCNENEVVERNP 185

[Close]

BLAST of Cla012820 vs. TrEMBL
Match: B9GXS8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14220g PE=3 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 21  DFPAVDVFIYDGSLEGAADERGE--LGTTSYGLRLSFW----EDLRLYLRR-GGSALTLF 80
           DFPA DVF+        AD   E  +G  +  L +  +    E + +Y+   GGSALTLF
Sbjct: 105 DFPAFDVFVC------TADPYKEPPIGVVNTALSVMAYDYPTEKISVYISDDGGSALTLF 164

Query: 81  ALMAAAEFASHWLPVCNQNDAVERNP 100
           A M AA+FA+HWLP C +N+ +ERNP
Sbjct: 165 AFMEAAKFATHWLPFCKKNNILERNP 184

[Close]

BLAST of Cla012820 vs. TrEMBL
Match: U5GJE3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14220g PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 21  DFPAVDVFIYDGSLEGAADERGE--LGTTSYGLRLSFW----EDLRLYLRR-GGSALTLF 80
           DFPA DVF+        AD   E  +G  +  L +  +    E + +Y+   GGSALTLF
Sbjct: 105 DFPAFDVFVC------TADPYKEPPIGVVNTALSVMAYDYPTEKISVYISDDGGSALTLF 164

Query: 81  ALMAAAEFASHWLPVCNQNDAVERNP 100
           A M AA+FA+HWLP C +N+ +ERNP
Sbjct: 165 AFMEAAKFATHWLPFCKKNNILERNP 184

[Close]

BLAST of Cla012820 vs. TrEMBL
Match: L0ASV8_POPTO (Cellulose synthase-like protein OS=Populus tomentosa PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 21  DFPAVDVFIYDGSLEGAADERGE--LGTTSYGLRLSFW----EDLRLYLRR-GGSALTLF 80
           DFPA DVF+        AD   E  +G  +  L +  +    E + +Y+   GGSALTLF
Sbjct: 105 DFPAFDVFVC------TADPYKEPPIGVVNTALSVMAYDYPTEKISVYISDDGGSALTLF 164

Query: 81  ALMAAAEFASHWLPVCNQNDAVERNP 100
           A M AA+FA+HWLP C +N+ +ERNP
Sbjct: 165 AFMEAAKFATHWLPFCKKNNILERNP 184

[Close]

BLAST of Cla012820 vs. TrEMBL
Match: M5W8U4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb017427mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-07
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 1


Query: 10  PRVSRAGTEDLDFPAVDVFIYDGSLEGAADERGELGTTSYGLRLSFW------EDLRLYL 69
           P   R   ++ DFPA+DVFI        AD   E         LS        + + +Y+
Sbjct: 87  PENLRRVVKESDFPALDVFI------STADPHKEPPMNVVNTALSVMAYDYPIQKVSVYV 146

Query: 70  RR-GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
              GGSALTLFALM AA+FASHWLP C +N+ VE +P
Sbjct: 147 SDDGGSALTLFALMEAAKFASHWLPFCRKNNIVECSP 177

[Close]

BLAST of Cla012820 vs. NCBI nr
Match: gi|659102039|ref|XP_008451920.1| (PREDICTED: cellulose synthase-like protein G3 isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 9   PPRVSRAGTEDLDFPAVDVFIYDGSLEGAADERGELGTTSYGLRLSFWE----DLRLYLR 68
           P ++ R   ED DFPAVDVFI         D+   +   +  L +  ++     + +Y+ 
Sbjct: 92  PEKLKRLAEEDFDFPAVDVFICTTD----PDKEPPMSVVNSALSVMAYDYPVGKISVYIS 151

Query: 69  R-GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
             GGSALTLFAL AAA+FA HW+P C +ND V+RNP
Sbjct: 152 DDGGSALTLFALTAAAKFARHWVPFCKKNDVVKRNP 183

[Close]

BLAST of Cla012820 vs. NCBI nr
Match: gi|659102041|ref|XP_008451921.1| (PREDICTED: cellulose synthase-like protein G3 isoform X2 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 9   PPRVSRAGTEDLDFPAVDVFIYDGSLEGAADERGELGTTSYGLRLSFWE----DLRLYLR 68
           P ++ R   ED DFPAVDVFI         D+   +   +  L +  ++     + +Y+ 
Sbjct: 92  PEKLKRLAEEDFDFPAVDVFICTTD----PDKEPPMSVVNSALSVMAYDYPVGKISVYIS 151

Query: 69  R-GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
             GGSALTLFAL AAA+FA HW+P C +ND V+RNP
Sbjct: 152 DDGGSALTLFALTAAAKFARHWVPFCKKNDVVKRNP 183

[Close]

BLAST of Cla012820 vs. NCBI nr
Match: gi|778691116|ref|XP_011653225.1| (PREDICTED: cellulose synthase-like protein G3 isoform X2 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 9   PPRVSRAGTEDLDFPAVDVFIYDGSLEGAADE---RGELGTTSYGLRLSFWEDLRLYLRR 68
           P ++ R   ED DFPAVDVFI     E           L   +Y   +     + +Y+  
Sbjct: 95  PQKLKRVA-EDSDFPAVDVFICTTDPEKEPPMSVVNSVLSVMAYDYPVG---KISVYISD 154

Query: 69  -GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
            GGSALTLFAL AAA+FA HWLP CN+N+ VERNP
Sbjct: 155 DGGSALTLFALTAAAKFAKHWLPFCNENEVVERNP 185

[Close]

BLAST of Cla012820 vs. NCBI nr
Match: gi|449462565|ref|XP_004149011.1| (PREDICTED: cellulose synthase-like protein G3 isoform X1 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 9   PPRVSRAGTEDLDFPAVDVFIYDGSLEGAADE---RGELGTTSYGLRLSFWEDLRLYLRR 68
           P ++ R   ED DFPAVDVFI     E           L   +Y   +     + +Y+  
Sbjct: 95  PQKLKRVA-EDSDFPAVDVFICTTDPEKEPPMSVVNSVLSVMAYDYPVG---KISVYISD 154

Query: 69  -GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
            GGSALTLFAL AAA+FA HWLP CN+N+ VERNP
Sbjct: 155 DGGSALTLFALTAAAKFAKHWLPFCNENEVVERNP 185

[Close]

BLAST of Cla012820 vs. NCBI nr
Match: gi|1009173806|ref|XP_015868011.1| (PREDICTED: cellulose synthase-like protein G2 [Ziziphus jujuba])

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-08
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 9   PPRVSRAGTEDLDFPAVDVFIYDGSLEGAADERGELGTTSYGLRLSFW------EDLRLY 68
           P  + +   E  +FPA+DVFI        AD + E   +     +S        E L +Y
Sbjct: 103 PENIKKVAKES-EFPALDVFIC------TADPQKEPAMSVVNTAISVMAYDYPTEKLSVY 162

Query: 69  LRR-GGSALTLFALMAAAEFASHWLPVCNQNDAVERNP 100
           +   GGSALTLFALM AA+FASHWLP C +N+ VER+P
Sbjct: 163 VSDDGGSALTLFALMEAAKFASHWLPFCRKNNVVERSP 193

The following BLAST results are available for this feature:

BLAST of Cla012820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSLG3_ARATH	1.6e-06	39.33	Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2	[more]
CSLG2_ARATH	3.5e-06	39.53	Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1	[more]

BLAST of Cla012820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZW9_CUCSA	1.4e-09	46.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G053250 PE=3 SV=1	[more]
B9GXS8_POPTR	3.8e-07	44.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14220g PE=3 SV=2	[more]
U5GJE3_POPTR	3.8e-07	44.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14220g PE=3 SV=1	[more]
L0ASV8_POPTO	3.8e-07	44.19	Cellulose synthase-like protein OS=Populus tomentosa PE=3 SV=1	[more]
M5W8U4_PRUPE	4.9e-07	42.27	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb017427mg PE=4 S...	[more]

BLAST of Cla012820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102039\|ref\|XP_008451920.1\|	3.1e-10	42.71	PREDICTED: cellulose synthase-like protein G3 isoform X1 [Cucumis melo]	[more]
gi\|659102041\|ref\|XP_008451921.1\|	3.1e-10	42.71	PREDICTED: cellulose synthase-like protein G3 isoform X2 [Cucumis melo]	[more]
gi\|778691116\|ref\|XP_011653225.1\|	2.0e-09	46.32	PREDICTED: cellulose synthase-like protein G3 isoform X2 [Cucumis sativus]	[more]
gi\|449462565\|ref\|XP_004149011.1\|	2.0e-09	46.32	PREDICTED: cellulose synthase-like protein G3 isoform X1 [Cucumis sativus]	[more]
gi\|1009173806\|ref\|XP_015868011.1\|	4.9e-08	42.86	PREDICTED: cellulose synthase-like protein G2 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0009833	plant-type primary cell wall biogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005802	trans-Golgi network
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU68895	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012820	Cla012820.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU68895	WMU68895	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012820	Cla97C07G138200	Watermelon (97103) v2	wmwmbB173
Cla012820	CSPI04G06560	Wild cucumber (PI 183967)	cpiwmB308
Cla012820	Cucsa.114830	Cucumber (Gy14) v1	cgywmB170
Cla012820	Lsi07G007350	Bottle gourd (USVL1VR-Ls)	lsiwmB434
Cla012820	Cp4.1LG14g02640	Cucurbita pepo (Zucchini)	cpewmB225
Cla012820	CsGy4G006500	Cucumber (Gy14) v2	cgybwmB283
Cla012820	MELO3C016270.2	Melon (DHL92) v3.6.1	medwmB501
Cla012820	CsaV3_4G006790	Cucumber (Chinese Long) v3	cucwmB317
Cla012820	Bhi01G002317	Wax gourd	wgowmB183
Cla012820	Bhi01G002335	Wax gourd	wgowmB197

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012820	Silver-seed gourd	carwmB0043
Cla012820	Silver-seed gourd	carwmB0654
Cla012820	Cucurbita maxima (Rimu)	cmawmB314
Cla012820	Cucurbita maxima (Rimu)	cmawmB694
Cla012820	Cucurbita moschata (Rifu)	cmowmB308
Cla012820	Cucurbita moschata (Rifu)	cmowmB688
Cla012820	Melon (DHL92) v3.5.1	mewmB516
Cla012820	Watermelon (Charleston Gray)	wcgwmB371
Cla012820	Cucumber (Chinese Long) v2	cuwmB305