Cla012816 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012816
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA polymerase II transcriptional coactivator (AHRD V1 -- F0U4L9_AJEC8); contains Interpro domain(s) IPR017415 RNA polymerase II transcriptional coactivator KELP
Location	Chr7 : 26929897 .. 26931093 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCGAAATCCGACGCAGAATCGAGGAAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGATGAAATGACCGAGTCCAAAATTCGAGCCCTCGCCTCCAAGGACCTCGATCTCGACCTCTCCAAATCTCCTTACAAGACTTTCGTTCGCAACGTTGTGGAATCATTTCTCCAAGAACGATCTGAAGAACAGCAGCAAGACCAACCCGAGGATGTCTCTGCTGCTAAGGAGAAGGAGTACGACGACGGTGGCGATCTCATTGTTTGTTGGGTTTGTTTTTTCTTTTTCTGCCTCTTCTTCTTTCCAGTAGCTTGCGATTGCAATTTATTCTGGTTATTAGTGGGGATTTTGCGATTGTTAAGTTCTGATGATTGTATGCTTGTGGTGAATTGAAAATATGATTTTATTTGGCTTAGTTATCAAGCAAGAGGAAGGTGACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATCAGGGAGTTTTATAGAAAAGAAGGGAAAGACCTTCCTACGGCAAAAGGTGATTCTCCAACTGCTACTTGCTTGTGTTTATGGATGTTAATATCTTACTTATGGAGATTGCAACTTAGGTGAAACTCCTGTTAATTGCGTGCTTCTTGTTTGATATTGTGAAGATTTTGAACATTCTACTACTCCATAACCATATTAATGCATTGAAAGTGGGAAAAGTCGTACCGAATTGACTGTTTCTTATAACATTTTGGTCAAGTATAAATAAAGACAGCACAATTATTGGACCAATAACATGGGAAACAAATGGAAAAATAATTTTCGTGGAAATGTAGACCGATTAATTTGTTTGTTGAAGTTGAATGAGCAACAATGGCCACATATTTATATCTCGGATTCAAGGTAATTTGTGAAACTTGTATGAGTTTAATTTGTACAAAGCAAGGAAACAGGGACGATGTTTATAAAAACCATTGCACGTTGATCTCTTTTCTCATGAACTTGGATCTTTTTGATTAAAAACTCATATAATTTTTTCTCTCTGTTGTGGAAATTCTAAATGGCTAGTTTTTTTAGATTAAAAACTTGGATCTTTGATAACTCTGGTCTTATTTTTGCCTCAGGAATAAGCTTGACTGAAGAACAGTGGTCCGTCTTTAAAAAGAACGTACCTGCCATAGAAAAAGCTATTAAGAATATGCAATCACAAATAATGTGA

mRNA sequence

ATGGATTCCGAAATCCGACGCAGAATCGAGGAAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGATGAAATGACCGAGTCCAAAATTCGAGCCCTCGCCTCCAAGGACCTCGATCTCGACCTCTCCAAATCTCCTTACAAGACTTTCGTTCGCAACGTTGTGGAATCATTTCTCCAAGAACGATCTGAAGAACAGCAGCAAGACCAACCCGAGGATGTCTCTGCTGCTAAGGAGAAGGAGTACGACGACGGTGGCGATCTCATTGTTTGTTGGTTATCAAGCAAGAGGAAGGTGACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATCAGGGAGTTTTATAGAAAAGAAGGGAAAGACCTTCCTACGGCAAAAGGAATAAGCTTGACTGAAGAACAGTGGTCCGTCTTTAAAAAGAACGTACCTGCCATAGAAAAAGCTATTAAGAATATGCAATCACAAATAATGTGA

Coding sequence (CDS)

ATGGATTCCGAAATCCGACGCAGAATCGAGGAAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGATGAAATGACCGAGTCCAAAATTCGAGCCCTCGCCTCCAAGGACCTCGATCTCGACCTCTCCAAATCTCCTTACAAGACTTTCGTTCGCAACGTTGTGGAATCATTTCTCCAAGAACGATCTGAAGAACAGCAGCAAGACCAACCCGAGGATGTCTCTGCTGCTAAGGAGAAGGAGTACGACGACGGTGGCGATCTCATTGTTTGTTGGTTATCAAGCAAGAGGAAGGTGACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATCAGGGAGTTTTATAGAAAAGAAGGGAAAGACCTTCCTACGGCAAAAGGAATAAGCTTGACTGAAGAACAGTGGTCCGTCTTTAAAAAGAACGTACCTGCCATAGAAAAAGCTATTAAGAATATGCAATCACAAATAATGTGA

Protein sequence

MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQERSEEQQQDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM

Homology

[Close]

BLAST of Cla012816 vs. Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           M+ E + +IE+ V  IL  SDM E+TE K+R LAS+ L +DLS+  +K FVR+VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  E---RSEEQQQDQPEDVSAAKE-----KEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSI 120
           E   R  E  Q   E+    K+     KE+DD GDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 121 REFYRKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQI 158
           RE+Y+K+GK+LPT+KGISLT+EQWS FKKN+PAIE A+K M+S++
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165

[Close]

BLAST of Cla012816 vs. Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 64  EEQQQDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKEGKDL 123
           +E +   P    A    + D   D++VC +S  R+V+++++ GK  + IREFY K+GK L
Sbjct: 17  DESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTL 76

Query: 124 PTAKGISLTEEQWSVFKKNVPAIEKAIKNM 154
           P  KGISL+ +QW+  + +   IEKA+ ++
Sbjct: 77  PGKKGISLSVDQWNTLRNHAEDIEKALSDL 106

[Close]

BLAST of Cla012816 vs. Swiss-Prot
Match: MDA3_ARATH (Mediator-associated protein 3 OS=Arabidopsis thaliana GN=At5g42060 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-10
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
          +D ++RR+I++ V++ILESS++ ++TE K R  AS  LDLDLS+ PYK  V+  VE+FL+
Sbjct: 11 IDKDLRRKIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFLE 70

Query: 61 E 62
          E
Sbjct: 71 E 71

[Close]

BLAST of Cla012816 vs. Swiss-Prot
Match: TCP4_CAEEL (Putative RNA polymerase II transcriptional coactivator OS=Caenorhabditis elegans GN=T13F2.2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 1


Query: 56  ESFLQERSEEQQQDQPEDVSAAKEKEY-------DDGGDLIVCWLSSKRKVTIQDFRGKT 115
           E+  ++R  E  +++ ++V  AK +E         DG ++    + + R  T+  F+GK 
Sbjct: 23  ETKSKKRQSEAVEEEKQEVKKAKNEEEVSGRLKDSDGNEMFE--IGNLRYATVSKFKGKE 82

Query: 116 LVSIREFY--RKEGKDLPTAKGISLTEEQWSVFKKNVPAIEK 149
            V+IRE+Y  R   K +P+ KGISL++ QW+  K  +P I+K
Sbjct: 83  YVNIREYYIDRDSQKMMPSRKGISLSKAQWANLKDLIPEIDK 122

[Close]

BLAST of Cla012816 vs. Swiss-Prot
Match: TCP4_DROME (RNA polymerase II transcriptional coactivator OS=Drosophila melanogaster GN=Ssb-c31a PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1


Query: 83  DDGGDLIVCW-LSSKRKVTIQDFRGKTLVSIREFYRKEGKDLPTAKGISLTEEQWSVFKK 142
           D G +    W L   R+V I +FRG+  V IREFY K G+ LP  KGISL+  QW    +
Sbjct: 40  DSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLE 99

Query: 143 NVPAIEKAIKN 153
               + +AI+N
Sbjct: 100 VAEEVTRAIEN 110

[Close]

BLAST of Cla012816 vs. TrEMBL
Match: A0A0A0KZW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052710 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 143/158 (90.51%), Postives = 150/158 (94.94%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           MDS+++RRIEEAVR ILESSDMDEMTESKIRALASKDL LDLSKSPYK+ VR VVESFLQ
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQQQDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKEG 120
           ERSE+  +DQPED SAAKEKEYDD GDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRK+G
Sbjct: 61  ERSEQHPEDQPEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 159
           KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Cla012816 vs. TrEMBL
Match: I3T268_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.5e-52
Identity = 105/157 (66.88%), Postives = 131/157 (83.44%), Query Frame = 1


Query: 2   DSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQE 61
           D E + RIEEAVR+ILE S+MDE+TESKIR  AS +L LDLS  P+K FV+ VV++FL+E
Sbjct: 4   DPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFLEE 63

Query: 62  RSEE-QQQDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKEG 121
           + ++ ++Q Q E     ++KE+DD GDLI+C LS KRKVTIQDFRGKTLVSIRE+YRK+G
Sbjct: 64  KQQQLEEQQQEEGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDG 123

Query: 122 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQI 158
           KDLPT+KGISLTEEQWS FKKNVPA+EKAI+ M+S+I
Sbjct: 124 KDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI 160

[Close]

BLAST of Cla012816 vs. TrEMBL
Match: A0A151U860_CAJCA (RNA polymerase II transcriptional coactivator KELP OS=Cajanus cajan GN=KK1_008228 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 109/169 (64.50%), Postives = 130/169 (76.92%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           MDSE + RIEE VRRIL+ SDMDE+TE KIR  AS+ L LDLS   +K FVR VVE+FLQ
Sbjct: 1   MDSETKERIEETVRRILQESDMDEVTEHKIRKQASQQLALDLSLPHFKAFVRQVVEAFLQ 60

Query: 61  ERSEEQQQDQPED-------------VSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGK 120
           E+ ++QQQ+  +D                +K KEY+D GDLI+C LS KRKVTIQDFRGK
Sbjct: 61  EKQQQQQQEDDDDDDDDEEEEEQQQQQGVSKGKEYNDDGDLIICRLSDKRKVTIQDFRGK 120

Query: 121 TLVSIREFYRKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQ 157
           TLVSIRE+Y+K+GK+LPT+KGISLTEEQWS FKKNVPAIEKAIK M+S+
Sbjct: 121 TLVSIREYYKKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMESR 169

[Close]

BLAST of Cla012816 vs. TrEMBL
Match: C6SVB2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51
Identity = 109/160 (68.12%), Postives = 132/160 (82.50%), Query Frame = 1


Query: 2   DSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQE 61
           D+E + RIEE VRRIL+ SDMDE+TESKIR  AS+ L LDLS+  +K FV+ VV++FLQE
Sbjct: 3   DTETKGRIEETVRRILQESDMDEVTESKIRKQASEHLGLDLSQPYFKAFVKQVVKAFLQE 62

Query: 62  ---RSEEQQQDQPEDVS---AAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREF 121
              R ++QQQD+ E+     A+K KEYDD GDLI+C LS KR+VTIQDFRGKTLVSIRE+
Sbjct: 63  EEQRQKQQQQDEDEEEELGGASKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIREY 122

Query: 122 YRKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQS 156
           Y+K+GK+LPT+KGISLTEEQWS FKKNVPAIEKAIK M+S
Sbjct: 123 YKKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMES 162

[Close]

BLAST of Cla012816 vs. TrEMBL
Match: A0A0B2Q9L3_GLYSO (RNA polymerase II transcriptional coactivator KELP OS=Glycine soja GN=glysoja_002825 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-51
Identity = 108/160 (67.50%), Postives = 131/160 (81.88%), Query Frame = 1


Query: 2   DSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQE 61
           D+E + RIEE VRRIL+ SDMDE+TESKIR  AS+ L LDLS+  +K FV+ VV++FLQE
Sbjct: 3   DTETKGRIEETVRRILQESDMDEVTESKIRKQASEHLGLDLSQPYFKAFVKQVVKAFLQE 62

Query: 62  ---RSEEQQQDQPEDVS---AAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREF 121
              R ++QQQD+ E+      +K KEYDD GDLI+C LS KR+VTIQDFRGKTLVSIRE+
Sbjct: 63  EEQRQKQQQQDEDEEEELGGGSKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIREY 122

Query: 122 YRKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQS 156
           Y+K+GK+LPT+KGISLTEEQWS FKKNVPAIEKAIK M+S
Sbjct: 123 YKKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMES 162

[Close]

BLAST of Cla012816 vs. NCBI nr
Match: gi|659102054|ref|XP_008451928.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           MDSE +RRIEEAVRRILE+SDMDEMTESKIRALASKDLDLDLSKSPYK+ VR VVESFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQQQDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKEG 120
           ERSE+Q QDQ ED SAAKEKEYDD GDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRK+G
Sbjct: 61  ERSEQQPQDQAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 159
           KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Cla012816 vs. NCBI nr
Match: gi|449462521|ref|XP_004148989.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.1e-73
Identity = 143/158 (90.51%), Postives = 150/158 (94.94%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           MDS+++RRIEEAVR ILESSDMDEMTESKIRALASKDL LDLSKSPYK+ VR VVESFLQ
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQQQDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKEG 120
           ERSE+  +DQPED SAAKEKEYDD GDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRK+G
Sbjct: 61  ERSEQHPEDQPEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 159
           KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Cla012816 vs. NCBI nr
Match: gi|694428647|ref|XP_009341880.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Pyrus x bretschneideri])

HSP 1 Score: 221.9 bits (564), Expect = 8.1e-55
Identity = 109/161 (67.70%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           M++E  ++IEE VRRILE SDMDEMTE KIR  AS++L+LDLSKSPYK FV+ VV+SFL+
Sbjct: 1   MEAETEQKIEETVRRILEESDMDEMTEFKIRKQASEELELDLSKSPYKAFVKQVVQSFLE 60

Query: 61  ERSEEQQ----QDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFY 120
           E+++++Q    +DQ  +   A+E+EYDD GDL++C LS+KRKVT+Q+FRGK LVSIREFY
Sbjct: 61  EQNQKEQDAAQKDQNPEADGAREREYDDNGDLVICRLSAKRKVTLQEFRGKNLVSIREFY 120

Query: 121 RKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQI 158
            K+GK+LPTAKGISLTEEQWSVFKKNVPAIEKAI  M+S+I
Sbjct: 121 SKDGKELPTAKGISLTEEQWSVFKKNVPAIEKAISKMESRI 161

[Close]

BLAST of Cla012816 vs. NCBI nr
Match: gi|657949194|ref|XP_008341766.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Malus domestica])

HSP 1 Score: 218.4 bits (555), Expect = 9.0e-54
Identity = 108/161 (67.08%), Postives = 135/161 (83.85%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           M++E  ++IEE VRRILE SDMDEMTE KIR  AS++L+LDLSK PYK FV+ VV+SFL 
Sbjct: 1   MEAETEQKIEETVRRILEESDMDEMTEFKIRKQASQELELDLSKPPYKAFVKQVVQSFLD 60

Query: 61  ERSEEQQQ----DQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFY 120
           E+++++Q+    DQ  +   A+E+EYDD GDL++C LS+KRKVT+Q+FRGK LVSIREFY
Sbjct: 61  EQNQKEQEAAQKDQNPEADGAQEREYDDNGDLVICRLSAKRKVTLQEFRGKNLVSIREFY 120

Query: 121 RKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQI 158
            K+GK+LPTAKGISLTEEQWSVFKKNVPAIEKAI  M+S+I
Sbjct: 121 FKDGKELPTAKGISLTEEQWSVFKKNVPAIEKAISKMESRI 161

[Close]

BLAST of Cla012816 vs. NCBI nr
Match: gi|694355077|ref|XP_009358633.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Pyrus x bretschneideri])

HSP 1 Score: 214.9 bits (546), Expect = 9.9e-53
Identity = 105/161 (65.22%), Postives = 136/161 (84.47%), Query Frame = 1


Query: 1   MDSEIRRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKTFVRNVVESFLQ 60
           M++E  ++IE+ VRRILE SDMDEMTE KIR  AS++L+LDLSK PY+ FV+ VV+SFL+
Sbjct: 1   MEAETEQKIEKTVRRILEESDMDEMTEFKIRKQASEELELDLSKPPYRAFVKQVVQSFLE 60

Query: 61  ERSEEQQ----QDQPEDVSAAKEKEYDDGGDLIVCWLSSKRKVTIQDFRGKTLVSIREFY 120
           E+++++Q    +D+  +   A+E+EYDD GDL++C LS+KRKVT+Q+FRGK LVSIREFY
Sbjct: 61  EQNQKEQAAAQKDENPEAEGAQEREYDDNGDLVICRLSAKRKVTLQEFRGKNLVSIREFY 120

Query: 121 RKEGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQI 158
            K+GK+LPTAKGISLTEEQWSVFKKNVPAIEKAI  M+S+I
Sbjct: 121 FKDGKELPTAKGISLTEEQWSVFKKNVPAIEKAISKMESRI 161

The following BLAST results are available for this feature:

BLAST of Cla012816 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KELP_ARATH	1.3e-44	55.76	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KE...	[more]
KIWI_ARATH	1.7e-12	36.67	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KI...	[more]
MDA3_ARATH	8.0e-10	50.82	Mediator-associated protein 3 OS=Arabidopsis thaliana GN=At5g42060 PE=1 SV=1	[more]
TCP4_CAEEL	3.7e-07	32.35	Putative RNA polymerase II transcriptional coactivator OS=Caenorhabditis elegans...	[more]
TCP4_DROME	3.1e-06	42.25	RNA polymerase II transcriptional coactivator OS=Drosophila melanogaster GN=Ssb-...	[more]

BLAST of Cla012816 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZW5_CUCSA	3.5e-73	90.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052710 PE=4 SV=1	[more]
I3T268_LOTJA	4.5e-52	66.88	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A151U860_CAJCA	1.3e-51	64.50	RNA polymerase II transcriptional coactivator KELP OS=Cajanus cajan GN=KK1_00822...	[more]
C6SVB2_SOYBN	2.9e-51	68.13	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2Q9L3_GLYSO	8.5e-51	67.50	RNA polymerase II transcriptional coactivator KELP OS=Glycine soja GN=glysoja_00...	[more]

BLAST of Cla012816 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102054\|ref\|XP_008451928.1\|	3.5e-74	92.41	PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo]	[more]
gi\|449462521\|ref\|XP_004148989.1\|	5.1e-73	90.51	PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Cucumis sati...	[more]
gi\|694428647\|ref\|XP_009341880.1\|	8.1e-55	67.70	PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Pyrus x bret...	[more]
gi\|657949194\|ref\|XP_008341766.1\|	9.0e-54	67.08	PREDICTED: RNA polymerase II transcriptional coactivator KELP [Malus domestica]	[more]
gi\|694355077\|ref\|XP_009358633.1\|	9.9e-53	65.22	PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Pyrus x bret...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003173	PC4
IPR009044	ssDNA-bd_transcriptional_reg
IPR009057	Homeobox-like_sf
IPR014876	DEK_C
IPR017415	KELP

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003713	transcription coactivator activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15918	watermelon EST collection version 2.0	transcribed_cluster
WMU45480	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012816	Cla012816.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15918	WMU15918	transcribed_cluster
WMU45480	WMU45480	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003173	Transcriptional coactivator p15 (PC4)	PFAM	PF02229	PC4	coord: 93..141 score: 1.2
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	G3DSA:2.30.31.10		coord: 90..152 score: 2.7
IPR009044	ssDNA-binding transcriptional regulator	unknown	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 90..152 score: 1.73
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 7..61 score: 2.0
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 7..59 score: 1.7
IPR017415	RNA polymerase II transcriptional coactivator KELP	PIR	PIRSF038156	RNA_polymII_KELP	coord: 1..157 score: 5.3
None	No IPR available	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 1..158 score: 1.6
None	No IPR available	PANTHER	PTHR13215:SF6	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP	coord: 1..158 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012816	Cla97C07G138240	Watermelon (97103) v2	wmwmbB173
Cla012816	Csa4G052710	Cucumber (Chinese Long) v2	cuwmB305
Cla012816	MELO3C016275	Melon (DHL92) v3.5.1	mewmB516
Cla012816	ClCG07G011480	Watermelon (Charleston Gray)	wcgwmB371
Cla012816	CSPI04G06520	Wild cucumber (PI 183967)	cpiwmB308
Cla012816	Cucsa.114880	Cucumber (Gy14) v1	cgywmB170
Cla012816	CmaCh16G005360	Cucurbita maxima (Rimu)	cmawmB314
Cla012816	CmoCh16G005890	Cucurbita moschata (Rifu)	cmowmB308
Cla012816	Lsi07G007310	Bottle gourd (USVL1VR-Ls)	lsiwmB434
Cla012816	Cp4.1LG14g02620	Cucurbita pepo (Zucchini)	cpewmB225
Cla012816	CsGy4G006450	Cucumber (Gy14) v2	cgybwmB283
Cla012816	MELO3C016275.2	Melon (DHL92) v3.6.1	medwmB501
Cla012816	Carg11443	Silver-seed gourd	carwmB0654
Cla012816	CsaV3_4G006740	Cucumber (Chinese Long) v3	cucwmB317
Cla012816	Bhi01G002311	Wax gourd	wgowmB183

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012816	Cucurbita pepo (Zucchini)	cpewmB422
Cla012816	Silver-seed gourd	carwmB0043
Cla012816	Cucurbita maxima (Rimu)	cmawmB694
Cla012816	Cucurbita moschata (Rifu)	cmowmB688