Cla012466 (gene) Watermelon (97103) v1

Overview
NameCla012466
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHydrolase alpha/beta fold family protein expressed (AHRD V1 ***- Q9FWB6_ORYSJ)
LocationChr8 : 874953 .. 876478 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATAGCAATAGGAGCAGCATTTGCATTGGGTTTTATTGGATGGATTTATCAAACACTTATAAAGCCTCCACCTCCAAGAATATGTGGATTAGCAAATGGTCCACCACTGACCTCCCCCAGAGTAAAGCTGAATGATGGAAGGCATTTGGCCTACAGAGAATTAGGAGTTTCTAAGGAAGAGGCTCAATACAAAATCATTCTTTGTCATGGCCTTGATAGCTGCAAAGATATGGACTTGCCTATCTCTCAAGTACGACATTATTATTCTTCTCTTACTCATCATTGTCTTTATTTTGGTCTTTTTCATTTCTTTTTATTTTAATTACTATTAAAATATTTTGGTCTATTCCCAAACCTATAATTTGAGACTTTTAAAACCCTAGAAATCTTAATTAAAAAAAATAGTGGAAATCATCTTTTTATTGTCGAAGTTTTGAATAATTAACTAGTTTTCGATATGTAACTTTTGAGTCCCTAACTTTTTAAGAATAAGTGTATTTGGTCTCTAAATTTTTAAAATGTAATTGTTTAGGCCTTGTTTGGTAATTATTTCGTTTTTTATTTTTATTTTTGAAAATTAAACCTATTAAATACAATAGTTGAATTCTTTGCTAAATTCTAAAAACAAAAGGAAGTTTTTAAAAGCTATTTTTTTTAGTTTTCAAATTTTGGATTGGTTTTTTAAATTATGAACAGGCCCTTATCTTAGCCTTACCCGTTCGATTGATTGTTCTAAAGTCGACCACTGGTAAAAAATAGATAACAAAGGGATAAATTTGTAGGCGAAAGTAGTATCTATAGGTTTAATTTTCAAAAACAAAAACAAAAACCGAAATGGTTACAAACCGAAGTAGTGTCTATATACTTATTTAAAAAAGATTTAAAAATTAGTTCAATGACATTTTAAGCCTATTCTTAAAATCCCAAGAACTAAAAAGTTATAAAAACATAATTTTTCCTTAAAAATACACATTTATGAAATAGATCGAAGTAAGAGTGGGGTTACTAATTTACTAAAATGTAGTCCATATATTTGATTTTTAGGAACTTATGGAGGAGCTGAAGTTGTATTTGTTAGTGTACGATAGAGCTGGTTATTGTGAGAGTGATCCATATTCATCACGTTCAGTGAAGACCGAGGCATTTGACATTCAAGAATTAGCTGACAAATTGGAGCTTGGCACAAAATTTTATGTGATTGGATGTTCAATGGGAACATACCCTATTTGGGGTTGTCTCAAATATATTCCCCACAGGCACTTCTATCTTCAATATTCATAATGCTTTTTCTTTCAGTTCAATTACAAAATTGGTTTTGCAATGGGGAAATGGTTTCAAGTATTTCAATCATTGTTTGCTATAAAAGAAATATCTAAGGATAAAATAATATAGATTTAAAGTACAATTTTGGTTCTTCTGCTTTAATTCGAAAGTTGTTGAATTTTTATATTTACTCTTGTTAAGTTATATATATATTCTTAACTTTTTTTTTTTTTTGTTTTTATTGAAGATAAAATTTAA

mRNA sequence

ATGATTATAGCAATAGGAGCAGCATTTGCATTGGGTTTTATTGGATGGATTTATCAAACACTTATAAAGCCTCCACCTCCAAGAATATGTGGATTAGCAAATGGTCCACCACTGACCTCCCCCAGAGTAAAGCTGAATGATGGAAGGCATTTGGCCTACAGAGAATTAGGAGTTTCTAAGGAAGAGGCTCAATACAAAATCATTCTTTGTCATGGCCTTGATAGCTGCAAAGATATGGACTTGCCTATCTCTCAAGAACTTATGGAGGAGCTGAAGTTGTATTTGTTAGTGTACGATAGAGCTGGTTATTGTGAGAGTGATCCATATTCATCACGTTCAGTGAAGACCGAGGCATTTGACATTCAAGAATTAGCTGACAAATTGGAGCTTGGCACAAAATTTTATGTGATTGGATGTTCAATGGGAACATACCCTATTTGGGATAAAATTTAA

Coding sequence (CDS)

ATGATTATAGCAATAGGAGCAGCATTTGCATTGGGTTTTATTGGATGGATTTATCAAACACTTATAAAGCCTCCACCTCCAAGAATATGTGGATTAGCAAATGGTCCACCACTGACCTCCCCCAGAGTAAAGCTGAATGATGGAAGGCATTTGGCCTACAGAGAATTAGGAGTTTCTAAGGAAGAGGCTCAATACAAAATCATTCTTTGTCATGGCCTTGATAGCTGCAAAGATATGGACTTGCCTATCTCTCAAGAACTTATGGAGGAGCTGAAGTTGTATTTGTTAGTGTACGATAGAGCTGGTTATTGTGAGAGTGATCCATATTCATCACGTTCAGTGAAGACCGAGGCATTTGACATTCAAGAATTAGCTGACAAATTGGAGCTTGGCACAAAATTTTATGTGATTGGATGTTCAATGGGAACATACCCTATTTGGGATAAAATTTAA

Protein sequence

MIIAIGAAFALGFIGWIYQTLIKPPPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVSKEEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAFDIQELADKLELGTKFYVIGCSMGTYPIWDKI
Homology
[Close]
BLAST of Cla012466 vs. TrEMBL
Match: A0A0A0KSU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650285 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.0e-67
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKP-PPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVS 60
           MI  IGA+  LG IGWIYQ L K  PPPRICG ANGPPLTSPRVKLNDGRHLAYRELGV 
Sbjct: 1   MITVIGASI-LGIIGWIYQKLKKKAPPPRICGSANGPPLTSPRVKLNDGRHLAYRELGVP 60

Query: 61  KEEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAF 120
           KEEAQYKIILCHGLDSCKDMD+P+SQELMEELK+YLL++DRAGYCESDP  SRSVKTEAF
Sbjct: 61  KEEAQYKIILCHGLDSCKDMDVPVSQELMEELKVYLLLFDRAGYCESDPNPSRSVKTEAF 120

Query: 121 DIQELADKLELGTKFYVIGCSMGTYPIW 148
           DIQELADKLE+GTKFYVIGCSMGTYP+W
Sbjct: 121 DIQELADKLEIGTKFYVIGCSMGTYPLW 147

[Close]
BLAST of Cla012466 vs. TrEMBL
Match: A0A0A0LSN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G161090 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-56
Identity = 108/147 (73.47%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKPPPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVSK 60
           MI  IG AFA+GF+GW+YQ+L KP PP+ICG  NGPP+TSPRV LNDGRHLAYR  GVS 
Sbjct: 1   MITPIGVAFAVGFLGWVYQSL-KPSPPKICGSENGPPVTSPRVMLNDGRHLAYRIFGVSN 60

Query: 61  EEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAFD 120
           EEA+YKII+CHG +S KDM LP SQE M+ELK+ +++YDRAGY ESDPY SRSVK+EAFD
Sbjct: 61  EEAEYKIIMCHGFNSSKDMYLPASQEFMDELKICIVLYDRAGYGESDPYPSRSVKSEAFD 120

Query: 121 IQELADKLELGTKFYVIGCSMGTYPIW 148
           IQELADKL LGTKFYVIGCS+G   IW
Sbjct: 121 IQELADKLHLGTKFYVIGCSIGASGIW 146

[Close]
BLAST of Cla012466 vs. TrEMBL
Match: M5WBP7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008197mg PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKPPPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVSK 60
           MI+ +  A  +G +GW YQ L KPPPP+ICG   GPP+TSPRVKL+DGRHLAYRE GV K
Sbjct: 1   MIVPVAIALTVGLLGWAYQAL-KPPPPKICGSPGGPPVTSPRVKLSDGRHLAYRECGVPK 60

Query: 61  EEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAFD 120
           EEA++KII+ HG DS KD+ LP +QEL+EEL +Y L +DRAGY ESDPY SRSVK+EAFD
Sbjct: 61  EEAKHKIIVVHGFDSSKDLSLPFAQELIEELSIYFLFFDRAGYGESDPYPSRSVKSEAFD 120

Query: 121 IQELADKLELGTKFYVIGCSMGTYPIW 148
           IQELADKL++G+KFYVIG SMG YP+W
Sbjct: 121 IQELADKLQIGSKFYVIGISMGAYPVW 146

[Close]
BLAST of Cla012466 vs. TrEMBL
Match: A0A0A0LT05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G160215 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.6e-53
Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 1 

Query: 11  LGFIGWIYQTLIKPPPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVSKEEAQYKIILC 70
           +G +GW+Y  L KPP P+ICG  NGP +TSPRVKLNDGRHLAY+E GV KE+AQYKII+ 
Sbjct: 1   MGIVGWVYVAL-KPPSPKICGTPNGPQVTSPRVKLNDGRHLAYKEFGVPKEKAQYKIIVS 60

Query: 71  HGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAFDIQELADKLEL 130
           HG ++ KDM + +SQE MEE+K Y+++YDRAGY ESDPY SRSVKTEAFDI+ELADKLEL
Sbjct: 61  HGYNASKDMHIAVSQEFMEEVKAYMVLYDRAGYGESDPYPSRSVKTEAFDIEELADKLEL 120

Query: 131 GTKFYVIGCSMGTYPIW 148
           G+KFYVIGCS+G YPIW
Sbjct: 121 GSKFYVIGCSLGAYPIW 136

[Close]
BLAST of Cla012466 vs. TrEMBL
Match: A0A067K5Z3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15207 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.3e-52
Identity = 98/147 (66.67%), Postives = 123/147 (83.67%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKPPPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVSK 60
           M++ I  A A+G +G  Y++L KPPPP ICG   GPP+TSPRVKL+DGRH+AYRE+G+ K
Sbjct: 1   MLVPIAVAVAVGLLGLAYKSL-KPPPPNICGSPGGPPITSPRVKLSDGRHIAYREMGIPK 60

Query: 61  EEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAFD 120
           +EAQYKII+ HG DS KD++LP+ QEL+EEL++Y L +DRAGY ESDPY SRSVKTEA+D
Sbjct: 61  DEAQYKIIVVHGFDSSKDLNLPVPQELIEELRIYFLFFDRAGYGESDPYPSRSVKTEAYD 120

Query: 121 IQELADKLELGTKFYVIGCSMGTYPIW 148
           IQELADKL++ +KFYVIG SMG YPI+
Sbjct: 121 IQELADKLQISSKFYVIGLSMGAYPIY 146

[Close]
BLAST of Cla012466 vs. NCBI nr
Match: gi|659119555|ref|XP_008459720.1| (PREDICTED: uncharacterized protein LOC103498762 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 8.5e-70
Identity = 130/147 (88.44%), Postives = 134/147 (91.16%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKPPPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVSK 60
           MI  IGA   LG IGWIYQ L K PPPRICG ANGPPL+SPRVKLNDGRHLAYRELGV K
Sbjct: 27  MIRVIGATILLGIIGWIYQRLKKAPPPRICGSANGPPLSSPRVKLNDGRHLAYRELGVPK 86

Query: 61  EEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAFD 120
           E+AQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDP  SRSVKTEAFD
Sbjct: 87  EKAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPNPSRSVKTEAFD 146

Query: 121 IQELADKLELGTKFYVIGCSMGTYPIW 148
           IQELADKLE+GTKFYVIGCSMGTYP+W
Sbjct: 147 IQELADKLEIGTKFYVIGCSMGTYPVW 173

[Close]
BLAST of Cla012466 vs. NCBI nr
Match: gi|449447761|ref|XP_004141636.1| (PREDICTED: uncharacterized protein LOC101207495 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKP-PPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVS 60
           MI  IGA+  LG IGWIYQ L K  PPPRICG ANGPPLTSPRVKLNDGRHLAYRELGV 
Sbjct: 11  MITVIGASI-LGIIGWIYQKLKKKAPPPRICGSANGPPLTSPRVKLNDGRHLAYRELGVP 70

Query: 61  KEEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAF 120
           KEEAQYKIILCHGLDSCKDMD+P+SQELMEELK+YLL++DRAGYCESDP  SRSVKTEAF
Sbjct: 71  KEEAQYKIILCHGLDSCKDMDVPVSQELMEELKVYLLLFDRAGYCESDPNPSRSVKTEAF 130

Query: 121 DIQELADKLELGTKFYVIGCSMGTYPIW 148
           DIQELADKLE+GTKFYVIGCSMGTYP+W
Sbjct: 131 DIQELADKLEIGTKFYVIGCSMGTYPLW 157

[Close]
BLAST of Cla012466 vs. NCBI nr
Match: gi|700197498|gb|KGN52675.1| (hypothetical protein Csa_5G650285 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKP-PPPRICGLANGPPLTSPRVKLNDGRHLAYRELGVS 60
           MI  IGA+  LG IGWIYQ L K  PPPRICG ANGPPLTSPRVKLNDGRHLAYRELGV 
Sbjct: 1   MITVIGASI-LGIIGWIYQKLKKKAPPPRICGSANGPPLTSPRVKLNDGRHLAYRELGVP 60

Query: 61  KEEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAF 120
           KEEAQYKIILCHGLDSCKDMD+P+SQELMEELK+YLL++DRAGYCESDP  SRSVKTEAF
Sbjct: 61  KEEAQYKIILCHGLDSCKDMDVPVSQELMEELKVYLLLFDRAGYCESDPNPSRSVKTEAF 120

Query: 121 DIQELADKLELGTKFYVIGCSMGTYPIW 148
           DIQELADKLE+GTKFYVIGCSMGTYP+W
Sbjct: 121 DIQELADKLEIGTKFYVIGCSMGTYPLW 147

[Close]
BLAST of Cla012466 vs. NCBI nr
Match: gi|449447763|ref|XP_004141637.1| (PREDICTED: uncharacterized protein LOC101207737 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 5.3e-64
Identity = 122/149 (81.88%), Postives = 134/149 (89.93%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIG-WIYQTLIKPPPPR-ICGLANGPPLTSPRVKLNDGRHLAYRELGV 60
           MI  IGA   LG IG WIYQ LIK PPPR ICGLANGPPLTSPRVKLNDGRHLAY+E+GV
Sbjct: 1   MITVIGATILLGIIGRWIYQRLIKVPPPRIICGLANGPPLTSPRVKLNDGRHLAYKEIGV 60

Query: 61  SKEEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEA 120
            KEEAQYKII+CHG ++CKDMDLPI+QE++EELK+YLL++DRAGYCESDP  SRSVKTEA
Sbjct: 61  PKEEAQYKIIVCHGYENCKDMDLPIAQEVLEELKVYLLLFDRAGYCESDPNPSRSVKTEA 120

Query: 121 FDIQELADKLELGTKFYVIGCSMGTYPIW 148
           FDIQELADKLE+GTKFYVIG SMGTYPIW
Sbjct: 121 FDIQELADKLEIGTKFYVIGLSMGTYPIW 149

[Close]
BLAST of Cla012466 vs. NCBI nr
Match: gi|659119350|ref|XP_008459608.1| (PREDICTED: uncharacterized protein LOC103498686 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 2.9e-62
Identity = 118/148 (79.73%), Postives = 133/148 (89.86%), Query Frame = 1 

Query: 1   MIIAIGAAFALGFIGWIYQTLIKPPPPR-ICGLANGPPLTSPRVKLNDGRHLAYRELGVS 60
           MI  IGA   LG IGWIYQ L+K PPP+ I GLANGPPLTSPRVKL+DGRHLAY+ELGV 
Sbjct: 22  MITVIGATILLGIIGWIYQRLMKAPPPKTIYGLANGPPLTSPRVKLHDGRHLAYKELGVP 81

Query: 61  KEEAQYKIILCHGLDSCKDMDLPISQELMEELKLYLLVYDRAGYCESDPYSSRSVKTEAF 120
           KEEAQ+KII+CHG ++CKDMDLPISQE++EELK+YLL+YDRAGY ESDP  SRSVKTEAF
Sbjct: 82  KEEAQHKIIVCHGYENCKDMDLPISQEVLEELKVYLLLYDRAGYYESDPNPSRSVKTEAF 141

Query: 121 DIQELADKLELGTKFYVIGCSMGTYPIW 148
           DIQELAD+LELG+KFYVIGCS+GTYPIW
Sbjct: 142 DIQELADRLELGSKFYVIGCSIGTYPIW 169

The following BLAST results are available for this feature:
BLAST of Cla012466 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSU1_CUCSA8.0e-6785.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650285 PE=4 SV=1[more]
A0A0A0LSN0_CUCSA1.7e-5673.47Uncharacterized protein OS=Cucumis sativus GN=Csa_1G161090 PE=4 SV=1[more]
M5WBP7_PRUPE3.5e-5468.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008197mg PE=4 SV=1[more]
A0A0A0LT05_CUCSA8.6e-5371.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G160215 PE=4 SV=1[more]
A0A067K5Z3_JATCU3.3e-5266.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15207 PE=4 SV=1[more]
BLAST of Cla012466 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119555|ref|XP_008459720.1|8.5e-7088.44PREDICTED: uncharacterized protein LOC103498762 [Cucumis melo][more]
gi|449447761|ref|XP_004141636.1|1.1e-6685.81PREDICTED: uncharacterized protein LOC101207495 [Cucumis sativus][more]
gi|700197498|gb|KGN52675.1|1.1e-6685.81hypothetical protein Csa_5G650285 [Cucumis sativus][more]
gi|449447763|ref|XP_004141637.1|5.3e-6481.88PREDICTED: uncharacterized protein LOC101207737 [Cucumis sativus][more]
gi|659119350|ref|XP_008459608.1|2.9e-6279.73PREDICTED: uncharacterized protein LOC103498686 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012466Cla012466.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10992ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEINcoord: 1..147
score: 2.6
NoneNo IPR availablePANTHERPTHR10992:SF886ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEINcoord: 1..147
score: 2.6