Cla012452 (gene) Watermelon (97103) v1

NameCla012452
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 1158830 .. 1159405 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTTGCAGAGCATGTCTCGTCTGGGAAAACACAACTCGTGATCCTCGCAGAAAGGCATCAGCCTATAAAGAGTGGACTTACCTTTACTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTTGGCCAGAGTTGGATGACAATATGACCCTCCCCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGGTGTGTGGAACCTAAGGCCGCCGATTCATGACACGACCCCTTCCTTGGATCCGTTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGTGCTGTTGTGAAAGTCCCAGGAGAATTCACTTTTATCGACTGCTACTGGGAATGGTTGGGGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTCGTTTGTTTAATGCTGTGATGACCTCTTCATATACATATGATCGCAATAACGATGTGGTTCGAGCTTTTTGTGAGGCTTGGTGTCCGTCTACTAACACTCTCCATACCATGGCGGGCGAAGTATCCATTTCTTTATGGGACCTATGGTACGATCAGGGGGACTTTGTATGA

mRNA sequence

ATGGTTTACTTTGCAGAGCATGTCTCGTCTGGGAAAACACAACTCGTGATCCTCGCAGAAAGGCATCAGCCTATAAAGAGTGGACTTACCTTTACTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTTGGCCAGAGTTGGATGACAATATGACCCTCCCCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGGTGTGTGGAACCTAAGGCCGCCGATTCATGACACGACCCCTTCCTTGGATCCGTTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGTGCTGTTGTGAAAGTCCCAGGAGAATTCACTTTTATCGACTGCTACTGGGAATGGTTGGGGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTCGTTTGTTTAATGCTGTGATGACCTCTTCATATACATATGATCGCAATAACGATGTGGTTCGAGCTTTTTGTGAGGCTTGGTGTCCGTCTACTAACACTCTCCATACCATGGCGGGCGAAGTATCCATTTCTTTATGGGACCTATGGTACGATCAGGGGGACTTTGTATGA

Coding sequence (CDS)

ATGGTTTACTTTGCAGAGCATGTCTCGTCTGGGAAAACACAACTCGTGATCCTCGCAGAAAGGCATCAGCCTATAAAGAGTGGACTTACCTTTACTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTTGGCCAGAGTTGGATGACAATATGACCCTCCCCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGGTGTGTGGAACCTAAGGCCGCCGATTCATGACACGACCCCTTCCTTGGATCCGTTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGTGCTGTTGTGAAAGTCCCAGGAGAATTCACTTTTATCGACTGCTACTGGGAATGGTTGGGGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTCGTTTGTTTAATGCTGTGATGACCTCTTCATATACATATGATCGCAATAACGATGTGGTTCGAGCTTTTTGTGAGGCTTGGTGTCCGTCTACTAACACTCTCCATACCATGGCGGGCGAAGTATCCATTTCTTTATGGGACCTATGGTACGATCAGGGGGACTTTGTATGA

Protein sequence

MVYFAEHVSSGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSVEVPFHQGEKGVWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCYWEWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVSISLWDLWYDQGDFV
BLAST of Cla012452 vs. TrEMBL
Match: M1AKM4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009586 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.7e-26
Identity = 62/184 (33.70%), Postives = 103/184 (55.98%), Query Frame = 1

Query: 1   MVYFAEHVSSGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPE-LSV 60
           M  F +++S       ++ E  +  +  + F    PL G +++ WP L     +    SV
Sbjct: 1   MTIFRQYISHSTRLRHLIVETEEGGEQ-IRFLTHDPLVGRYANQWPSLKKPFHMANWTSV 60

Query: 61  EVPFHQGEKGVWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCYWE 120
                     +W+L+ P H  T     L +LGRR+++G+ RW + ++V GE+  I  YW+
Sbjct: 61  HTHTSNNLLRLWSLQAPYHHHTNIATHLPSLGRRIIQGDIRWGSTMEVEGEYHHIPGYWK 120

Query: 121 WLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVSIS 180
           W   ++  ++  L+  ++++A+  S +TYDRN+++ +AFCEAWCP TNTL T   E+SIS
Sbjct: 121 WTEDILGISQEVLNTAQIYDAIYASLFTYDRNSNIFQAFCEAWCPKTNTLLTSVEELSIS 180

Query: 181 LWDL 184
           LWDL
Sbjct: 181 LWDL 183

BLAST of Cla012452 vs. TrEMBL
Match: A0A0J8CE03_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104850 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.3e-24
Identity = 66/188 (35.11%), Postives = 101/188 (53.72%), Query Frame = 1

Query: 1   MVYFAEHVSSGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSVE 60
           MVYF E        L ++      +++G+TF +   L      +   ++    L E+SV+
Sbjct: 1   MVYFKEFKHGDDIHLSLIDNEEDDLRTGITFVIHKSLLRP-DGMHTHINKGSLLSEMSVK 60

Query: 61  VPFHQGEKGV---WNLRPPIHDTTPSLDPLLTLGRRMLEGETRW-SAVVKVPGEFTFIDC 120
           V   +G   V   + L+  + D          LGRR++ G  RW S  +++ GE  ++  
Sbjct: 61  VS--KGSHDVTPMYVLKSTVRDNFELPTSSSMLGRRIISGSVRWGSKSLRISGEAVYLPG 120

Query: 121 YWEWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEV 180
           YWEW   V+SR    L    ++ AV  S + YD+N D++R+FCE+WCP++NTLHTM GE 
Sbjct: 121 YWEWTEDVLSRFGSILDSCSIYPAVQASLFLYDKNPDIIRSFCESWCPTSNTLHTMTGEW 180

Query: 181 SISLWDLW 185
           SISLWDL+
Sbjct: 181 SISLWDLY 185

BLAST of Cla012452 vs. TrEMBL
Match: M1BMX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.2e-24
Identity = 67/186 (36.02%), Postives = 102/186 (54.84%), Query Frame = 1

Query: 1   MVYFAEHVS-SGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSV 60
           MV+F ++   S + + +I+      +++   F V+    G + D WP+L + + +   + 
Sbjct: 1   MVFFKDYTCPSSQLKYLIVGTEGSTVET--KFLVQDSFVGRYVDPWPQLRNTLHMRSWTS 60

Query: 61  EVPFHQGEKG--VWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCY 120
           E   H+  K    W L  P          L  LGRRM+  E  W   + + GE+ +I  Y
Sbjct: 61  EYD-HKSNKASKAWYLDKPNPQCKNIASTLSNLGRRMILEELCWGDNIVLEGEYHYILGY 120

Query: 121 WEWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVS 180
           WEW   V+S+N + L++  + +AV  S +TYDRN ++++AFCEAWCP TNTL T  GE S
Sbjct: 121 WEWTEDVLSKNGQSLNNACISDAVFASFFTYDRNYNIIQAFCEAWCPQTNTLLTSIGETS 180

Query: 181 ISLWDL 184
           ISLWDL
Sbjct: 181 ISLWDL 183

BLAST of Cla012452 vs. TrEMBL
Match: M1DL39_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400040325 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 65/186 (34.95%), Postives = 101/186 (54.30%), Query Frame = 1

Query: 1   MVYFAEHVS-SGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSV 60
           M++F ++   S + + +I+      +++   F V+    G + D WP+L + + +   + 
Sbjct: 1   MIFFKDYTCPSSQLKYLIVGTEGSTVET--KFLVQDSFVGRYVDPWPQLRNTLHMRSWTF 60

Query: 61  EVPFHQGEKG--VWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCY 120
           E   H+  K   VW L  P    T     L  LGR M+  E  W   + + GE+  I  Y
Sbjct: 61  EYD-HKSNKASKVWYLEKPNPQCTNIASTLSNLGRHMILEELHWGDNIVLEGEYHCIPGY 120

Query: 121 WEWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVS 180
           WEW   V+S+N + L++  + +AV    +TYDRN+++++AFCEAWCP TNTL T   E S
Sbjct: 121 WEWTEDVLSKNGQSLNNACISDAVFAYLFTYDRNSNIIQAFCEAWCPQTNTLLTSTRETS 180

Query: 181 ISLWDL 184
           ISLWDL
Sbjct: 181 ISLWDL 183

BLAST of Cla012452 vs. TrEMBL
Match: M0ZLB0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001285 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 66/186 (35.48%), Postives = 101/186 (54.30%), Query Frame = 1

Query: 1   MVYFAEHVS-SGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSV 60
           MV+F ++   S + + +I+      +++   F V+    G + D WP+L + + +   + 
Sbjct: 1   MVFFKDYTCPSSQLKYLIVGTEGSTVET--KFLVQDSFVGRYVDPWPQLRNTLHMRSWTS 60

Query: 61  EVPFHQGEKGV--WNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCY 120
           E   H+  K    W L  P    T     L  LG RM+  E  W   + + GE+  I  Y
Sbjct: 61  EYD-HKSNKASKEWYLEKPNPQRTNIASTLSNLGHRMILEELCWGDNIVLEGEYHCIPGY 120

Query: 121 WEWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVS 180
           WEW   V+S+N + L++  + +AV  S +TYDRN+++++AFCEAWCP TN L T  GE S
Sbjct: 121 WEWTEDVLSKNGQSLNNACISDAVFASLFTYDRNSNIIQAFCEAWCPKTNILLTSTGETS 180

Query: 181 ISLWDL 184
           ISLWDL
Sbjct: 181 ISLWDL 183

BLAST of Cla012452 vs. NCBI nr
Match: gi|659082744|ref|XP_008442010.1| (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-36
Identity = 76/153 (49.67%), Postives = 100/153 (65.36%), Query Frame = 1

Query: 1   MVYFAEHVSSGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSVE 60
           M+YF E    G   LV+  +R+Q  + GL+  VE P TG F+D WP LD++  LP LSVE
Sbjct: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67

Query: 61  VPFHQGEKGVWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCYWEW 120
           +P  +G K  W L+  IH+  P+ D +LTLG+ ++EG+TRW  + KVP EF F DCYWEW
Sbjct: 68  IPLFEG-KTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEW 127

Query: 121 LGLVVSRNERFLHDVRLFNAVMTSSYTYDRNND 154
           L LVV RN R L+   L++ V T  YTYDRN+D
Sbjct: 128 LELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 159

BLAST of Cla012452 vs. NCBI nr
Match: gi|848853669|ref|XP_012844633.1| (PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata])

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 77/184 (41.85%), Postives = 108/184 (58.70%), Query Frame = 1

Query: 1   MVYFAEHVSS-GKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSV 60
           MVYF +  S  G  QLV+L +  QP+  G T  V  PL G +   WP L     + E + 
Sbjct: 4   MVYFKDTRSPLGVEQLVVLDDERQPLDKGTTLVVHTPLIGKYPMQWPRLTSTYNINEWTH 63

Query: 61  EVPFHQGEKGVWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCYWE 120
           EV   +  K VW L+   H  +  +  L TLG  +++G+  W   ++  GEF +   YWE
Sbjct: 64  EVSLSKTLK-VWTLQTSHHKYSDEIVHLPTLGHNIIKGKAMWGESLQFTGEFHYTPGYWE 123

Query: 121 WLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVSIS 180
           W   V+SR E  L   +L++AV  S +TYDRN+++++AFCEAWCP+TNTL T  GE+S+S
Sbjct: 124 WTEDVLSRCESKLISAQLYDAVYASLFTYDRNSEIIKAFCEAWCPTTNTLLTSLGELSLS 183

Query: 181 LWDL 184
           LWDL
Sbjct: 184 LWDL 186

BLAST of Cla012452 vs. NCBI nr
Match: gi|848857215|ref|XP_012828660.1| (PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 1

Query: 1   MVYFAEHVSS-GKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSV 60
           M YF +  S  G  QLV+L +  QP+  G T  V   L G +   WP L     + E + 
Sbjct: 1   MAYFKDTRSPLGVEQLVVLDDERQPLDKGTTMVVHTSLIGRYPMQWPRLTSTYNINEWTH 60

Query: 61  EVPFHQGEKGVWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCYWE 120
           EV   +  K VW L+   H  +  +  L TLG  +++G+  W   ++  GEF +   YWE
Sbjct: 61  EVSLSKTLK-VWTLQTSHHKYSDEIVHLPTLGNNIIKGKAMWGESLQFTGEFHYTAGYWE 120

Query: 121 WLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVSIS 180
           W   V+SR E  L   +++++V  S +TYDRN+++++ FCEAWCP TNTL T  GE+S+S
Sbjct: 121 WTEDVLSRCESKLISAQIYDSVYASLFTYDRNSEIIKVFCEAWCPITNTLLTSLGELSLS 180

Query: 181 LWDL 184
           LWDL
Sbjct: 181 LWDL 183

BLAST of Cla012452 vs. NCBI nr
Match: gi|698515289|ref|XP_009802520.1| (PREDICTED: uncharacterized protein LOC104248035 [Nicotiana sylvestris])

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = 1

Query: 1   MVYFAE-HVSSGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDI-WPELDDNMTLPELS 60
           MVYF +  +SS  +Q +I+++ H+  K G    V   L G ++   W  L   + L + +
Sbjct: 1   MVYFKDSRISSSNSQCLIISD-HKGSKEGTRLLVGRTLIGQYATTSWVPLRAPLYLADWT 60

Query: 61  VEVPFHQGEKGVWNLRPPIHDTTPSLDPLLTLGRRMLEGETRWSAVVKVPGEFTFIDCYW 120
           +E  ++      W      H        LL L RR++  ET W   +   GEF ++  YW
Sbjct: 61  LE--YNSRPPKTWMFCTTTHRAWNVASTLLCLWRRIVNKETYWGNDLPFGGEFHYVPGYW 120

Query: 121 EWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEVSI 180
           EW   V+SR    L   R+++AV  S +TYDRN ++++AFCEAWCP TNTL T  GE+SI
Sbjct: 121 EWAEDVLSRCRLSLEGARIYDAVYASLFTYDRNTNIMQAFCEAWCPVTNTLLTSVGELSI 180

Query: 181 SLWDLWYDQG 189
           SLWDL+   G
Sbjct: 181 SLWDLYKISG 187

BLAST of Cla012452 vs. NCBI nr
Match: gi|870860446|gb|KMT11782.1| (hypothetical protein BVRB_5g104850 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 119.0 bits (297), Expect = 9.0e-24
Identity = 66/188 (35.11%), Postives = 101/188 (53.72%), Query Frame = 1

Query: 1   MVYFAEHVSSGKTQLVILAERHQPIKSGLTFTVEAPLTGFFSDIWPELDDNMTLPELSVE 60
           MVYF E        L ++      +++G+TF +   L      +   ++    L E+SV+
Sbjct: 1   MVYFKEFKHGDDIHLSLIDNEEDDLRTGITFVIHKSLLRP-DGMHTHINKGSLLSEMSVK 60

Query: 61  VPFHQGEKGV---WNLRPPIHDTTPSLDPLLTLGRRMLEGETRW-SAVVKVPGEFTFIDC 120
           V   +G   V   + L+  + D          LGRR++ G  RW S  +++ GE  ++  
Sbjct: 61  VS--KGSHDVTPMYVLKSTVRDNFELPTSSSMLGRRIISGSVRWGSKSLRISGEAVYLPG 120

Query: 121 YWEWLGLVVSRNERFLHDVRLFNAVMTSSYTYDRNNDVVRAFCEAWCPSTNTLHTMAGEV 180
           YWEW   V+SR    L    ++ AV  S + YD+N D++R+FCE+WCP++NTLHTM GE 
Sbjct: 121 YWEWTEDVLSRFGSILDSCSIYPAVQASLFLYDKNPDIIRSFCESWCPTSNTLHTMTGEW 180

Query: 181 SISLWDLW 185
           SISLWDL+
Sbjct: 181 SISLWDLY 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M1AKM4_SOLTU6.7e-2633.70Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009586 PE=4 SV=1[more]
A0A0J8CE03_BETVU6.3e-2435.11Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104850 PE=4 S... [more]
M1BMX6_SOLTU8.2e-2436.02Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1[more]
M1DL39_SOLTU1.4e-2334.95Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400040325 PE=4 SV=1[more]
M0ZLB0_SOLTU1.8e-2335.48Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001285 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659082744|ref|XP_008442010.1|3.5e-3649.67PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo][more]
gi|848853669|ref|XP_012844633.1|1.4e-3241.85PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata][more]
gi|848857215|ref|XP_012828660.1|1.1e-2939.13PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata][more]
gi|698515289|ref|XP_009802520.1|1.4e-2437.37PREDICTED: uncharacterized protein LOC104248035 [Nicotiana sylvestris][more]
gi|870860446|gb|KMT11782.1|9.0e-2435.11hypothetical protein BVRB_5g104850 [Beta vulgaris subsp. vulgaris][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012452Cla012452.1mRNA