Cla012394 (gene) Watermelon (97103) v1

NameCla012394
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGibberellin receptor GID1-like protein (AHRD V1 ***- A9LY13_9BRYO); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3
LocationChr8 : 2329889 .. 2330221 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAATTTGGAACAGGCAGATTGGTATTGGAAGGCGTTTTTGCCAACCGGGTCTGACAGAAACCATCCGGCGGCGCATGTGTTCGGTCGCCGTGCCGAAGACATCTCCGGCGTGAAGTTTCCGGTGACACTTCTGATCGTGGGAGGACAGGACCAGTTGCTAGATTGGGGGAAAAGGTACTACGAGTGGCTGAAAGAAGGTGGCAAAGACGTTGATTTGGTGGAATATCCAAATGCCATCCATGGATTTTATTTAGTTCCTGAGCTCAAGGATGCTTCATTGCTAATCAAAGACGTAAGTGATTTCATACACAAACTTATGGCAGTGTAA

mRNA sequence

ATGTTAAATTTGGAACAGGCAGATTGGTATTGGAAGGCGTTTTTGCCAACCGGGTCTGACAGAAACCATCCGGCGGCGCATGTGTTCGGTCGCCGTGCCGAAGACATCTCCGGCGTGAAGTTTCCGGTGACACTTCTGATCGTGGGAGGACAGGACCAGTTGCTAGATTGGGGGAAAAGGTACTACGAGTGGCTGAAAGAAGGTGGCAAAGACGTTGATTTGGTGGAATATCCAAATGCCATCCATGGATTTTATTTAGTTCCTGAGCTCAAGGATGCTTCATTGCTAATCAAAGACGTAAGTGATTTCATACACAAACTTATGGCAGTGTAA

Coding sequence (CDS)

ATGTTAAATTTGGAACAGGCAGATTGGTATTGGAAGGCGTTTTTGCCAACCGGGTCTGACAGAAACCATCCGGCGGCGCATGTGTTCGGTCGCCGTGCCGAAGACATCTCCGGCGTGAAGTTTCCGGTGACACTTCTGATCGTGGGAGGACAGGACCAGTTGCTAGATTGGGGGAAAAGGTACTACGAGTGGCTGAAAGAAGGTGGCAAAGACGTTGATTTGGTGGAATATCCAAATGCCATCCATGGATTTTATTTAGTTCCTGAGCTCAAGGATGCTTCATTGCTAATCAAAGACGTAAGTGATTTCATACACAAACTTATGGCAGTGTAA

Protein sequence

MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRYYEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLMAV
BLAST of Cla012394 vs. Swiss-Prot
Match: CXE18_ARATH (Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-22
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 1

Query: 1   MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKR 60
           +++ ++ DW WKA    G +R+H A +V G  A DISG+ +P T+++V G D L DW + 
Sbjct: 226 LVSPDRTDWCWKAM---GLNRDHEAVNVGGPNAVDISGLDYPETMVVVAGFDPLKDWQRS 285

Query: 61  YYEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLMA 110
           YYEWLK  GK   L+EYPN  H FY+ PEL +A  LI  + DF+ + +A
Sbjct: 286 YYEWLKLCGKKATLIEYPNMFHAFYIFPELPEAGQLIMRIKDFVDERVA 331

BLAST of Cla012394 vs. Swiss-Prot
Match: GID1B_ARATH (Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-19
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           + ++  DWYW+A+LP G DR+HPA + FG R + + GV FP +L++V G D + DW   Y
Sbjct: 239 VTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAY 298

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKL 108
            + LK+ G +V+L+    A  GFY +P       L+++++ F+H +
Sbjct: 299 VDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELNKFVHSI 344

BLAST of Cla012394 vs. Swiss-Prot
Match: GID1A_ARATH (Gibberellin receptor GID1A OS=Arabidopsis thaliana GN=GID1A PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-19
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           + +   DWYWKAFLP G DR HPA + F  R + + GV FP +L++V G D + DW   Y
Sbjct: 239 VTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAY 298

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIH 106
            E LK+ G++V L+    A  GFYL+P       ++ ++S F++
Sbjct: 299 AEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVN 342

BLAST of Cla012394 vs. Swiss-Prot
Match: GID1C_ARATH (Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-19
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           + +   DWYW+AFLP G DR HPA   FG R++ + G+ FP +L++V G D + DW  +Y
Sbjct: 237 VTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKY 296

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIH 106
            E LK+ G++V L+    A  GFYL+P       ++ +++ F++
Sbjct: 297 AEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIAAFVN 340

BLAST of Cla012394 vs. Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           + L+  DWYWKA+LP  +DR+HPA + FG     + G+ F  +L+IV G D   D    Y
Sbjct: 246 VTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAY 305

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIH 106
            + L+E G  V +V+  NA  GFYL+P       +++++SDF++
Sbjct: 306 ADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLN 349

BLAST of Cla012394 vs. TrEMBL
Match: A0A0A0KUP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647320 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-43
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 1   MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAED-ISGVKFPVTLLIVGGQDQLLDWGK 60
           MLNLEQADWYWKAFLP G DRNHPA HVFG    D IS VKFP TLLI+GG+DQL DWGK
Sbjct: 223 MLNLEQADWYWKAFLPKGCDRNHPAVHVFGPSGGDEISKVKFPTTLLILGGKDQLGDWGK 282

Query: 61  RYYEWLK-EGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLM 109
           +YYEWLK E GK+VDLVEYPNAIHGFY+VPELKD+SLLIKD++DFIHK++
Sbjct: 283 KYYEWLKDECGKEVDLVEYPNAIHGFYVVPELKDSSLLIKDMNDFIHKII 332

BLAST of Cla012394 vs. TrEMBL
Match: A0A0A0LUJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G466560 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.3e-37
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           LNLE+ADWYWKAFLP G++RNH AAHVFG +   ISGVK P TL+IVGG DQL DW ++Y
Sbjct: 227 LNLERADWYWKAFLPDGANRNHVAAHVFGEKGVKISGVKLPATLVIVGGSDQLRDWDRKY 286

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKL 108
           YEWLK+GGK+V++VEY NAIHGFY +PEL + SLLI++  +FI ++
Sbjct: 287 YEWLKKGGKEVEMVEYANAIHGFYAIPELPETSLLIEEAKNFIGRI 332

BLAST of Cla012394 vs. TrEMBL
Match: A5Y726_CUCME (Esterase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-35
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           LNLE+ADWYWKAFLP G++RNH AAHVFG    +IS VKFP TL+IVGG DQL DW ++Y
Sbjct: 226 LNLERADWYWKAFLPDGANRNHGAAHVFGEDGVNISAVKFPATLVIVGGSDQLRDWDRKY 285

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKL 108
           YEWLK+ GK+V+LVEYP AIHGFY++ EL +  LLI++  +FI K+
Sbjct: 286 YEWLKKAGKEVELVEYPKAIHGFYVISELPETWLLIEEAKNFIEKV 331

BLAST of Cla012394 vs. TrEMBL
Match: M5WIW5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019404mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.2e-33
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           L+LEQ DWYWK FLP GSDR+H AA+VFG+ ++D+ GV FP T++ VGG D L DW +RY
Sbjct: 227 LSLEQTDWYWKTFLPEGSDRDHAAANVFGQESKDVLGVNFPATIVFVGGFDLLQDWQRRY 286

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKL 108
           YE LK+ GK+  L+EYPN+ HGFY  PELK+ S L+K+V DFI KL
Sbjct: 287 YEGLKKSGKEAYLIEYPNSFHGFYAFPELKEPSFLVKEVRDFIEKL 332

BLAST of Cla012394 vs. TrEMBL
Match: U5FF60_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02210g PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-32
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1

Query: 1   MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKR 60
           ++++E+ DW WKAFLP GSDRNH   +VFG  A DISGVKFP TLL VGG D L DW KR
Sbjct: 222 LISVERTDWMWKAFLPEGSDRNHSVVNVFGPNAVDISGVKFPATLLFVGGFDPLQDWQKR 281

Query: 61  YYEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHK 107
           Y+E LK+ GK+V LVEYPN  HGFY +PE  + SLLI +V  F+HK
Sbjct: 282 YHEGLKKSGKEVHLVEYPNVFHGFYCLPESPEFSLLIGEVKSFVHK 327

BLAST of Cla012394 vs. NCBI nr
Match: gi|659119171|ref|XP_008459512.1| (PREDICTED: probable carboxylesterase 18 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 9.1e-45
Identity = 89/110 (80.91%), Postives = 101/110 (91.82%), Query Frame = 1

Query: 1   MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRA-EDISGVKFPVTLLIVGGQDQLLDWGK 60
           MLNL+Q+DWYWKAFLP G DRNHPAAHVFG  A +DIS VKFP TLLI+GG+DQL+DWGK
Sbjct: 221 MLNLKQSDWYWKAFLPKGCDRNHPAAHVFGPGAGDDISKVKFPTTLLILGGKDQLVDWGK 280

Query: 61  RYYEWLK-EGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLM 109
           RYYEWLK E GK+VDLVEYPNAIHGFY+VPELKD+SLLIKD++DFIHKL+
Sbjct: 281 RYYEWLKDECGKEVDLVEYPNAIHGFYIVPELKDSSLLIKDMNDFIHKLI 330

BLAST of Cla012394 vs. NCBI nr
Match: gi|449447535|ref|XP_004141523.1| (PREDICTED: probable carboxylesterase 18 isoform X2 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 1   MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAED-ISGVKFPVTLLIVGGQDQLLDWGK 60
           MLNLEQADWYWKAFLP G DRNHPA HVFG    D IS VKFP TLLI+GG+DQL DWGK
Sbjct: 223 MLNLEQADWYWKAFLPKGCDRNHPAVHVFGPSGGDEISKVKFPTTLLILGGKDQLGDWGK 282

Query: 61  RYYEWLK-EGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLM 109
           +YYEWLK E GK+VDLVEYPNAIHGFY+VPELKD+SLLIKD++DFIHK++
Sbjct: 283 KYYEWLKDECGKEVDLVEYPNAIHGFYVVPELKDSSLLIKDMNDFIHKII 332

BLAST of Cla012394 vs. NCBI nr
Match: gi|778707738|ref|XP_011656048.1| (PREDICTED: probable carboxylesterase 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 1   MLNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAED-ISGVKFPVTLLIVGGQDQLLDWGK 60
           MLNLEQADWYWKAFLP G DRNHPA HVFG    D IS VKFP TLLI+GG+DQL DWGK
Sbjct: 225 MLNLEQADWYWKAFLPKGCDRNHPAVHVFGPSGGDEISKVKFPTTLLILGGKDQLGDWGK 284

Query: 61  RYYEWLK-EGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLM 109
           +YYEWLK E GK+VDLVEYPNAIHGFY+VPELKD+SLLIKD++DFIHK++
Sbjct: 285 KYYEWLKDECGKEVDLVEYPNAIHGFYVVPELKDSSLLIKDMNDFIHKII 334

BLAST of Cla012394 vs. NCBI nr
Match: gi|659119173|ref|XP_008459513.1| (PREDICTED: probable carboxylesterase 18 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 79/108 (73.15%), Postives = 85/108 (78.70%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRA-EDISGVKFPVTLLIVGGQDQLLDWGKR 61
           L LE+ DW WKAFLP GS RNHPAAHVFG     D S   FP TLLIVGG+D L DW +R
Sbjct: 231 LTLEETDWSWKAFLPNGSSRNHPAAHVFGASGVRDTSSATFPPTLLIVGGRDPLRDWERR 290

Query: 62  YYEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKLM 109
           YYEWLKEGGK+VDLVEYPNAIHGFY VPELK+ SLLIKD  DF+HK M
Sbjct: 291 YYEWLKEGGKEVDLVEYPNAIHGFYAVPELKECSLLIKDAIDFMHKHM 338

BLAST of Cla012394 vs. NCBI nr
Match: gi|778730917|ref|XP_011659884.1| (PREDICTED: probable carboxylesterase 18 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1

Query: 2   LNLEQADWYWKAFLPTGSDRNHPAAHVFGRRAEDISGVKFPVTLLIVGGQDQLLDWGKRY 61
           LNLE+ADWYWKAFLP G++RNH AAHVFG +   ISGVKFP TL+IVGG DQL DW ++Y
Sbjct: 227 LNLERADWYWKAFLPDGANRNHVAAHVFGEKGVKISGVKFPATLVIVGGSDQLRDWDRKY 286

Query: 62  YEWLKEGGKDVDLVEYPNAIHGFYLVPELKDASLLIKDVSDFIHKL 108
           YEWLK+GGK+V++VEY NAIHGFY +PEL + SLLI++  +FI ++
Sbjct: 287 YEWLKKGGKEVEMVEYANAIHGFYAIPELPETSLLIEEAKNFIGRI 332

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CXE18_ARATH2.2e-2244.95Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1[more]
GID1B_ARATH2.2e-1937.74Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1[more]
GID1A_ARATH6.5e-1940.38Gibberellin receptor GID1A OS=Arabidopsis thaliana GN=GID1A PE=1 SV=1[more]
GID1C_ARATH8.5e-1938.46Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1[more]
GID1_ORYSJ4.0e-1638.46Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KUP0_CUCSA3.5e-4379.09Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647320 PE=4 SV=1[more]
A0A0A0LUJ2_CUCSA6.3e-3766.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G466560 PE=4 SV=1[more]
A5Y726_CUCME2.0e-3565.09Esterase OS=Cucumis melo PE=4 SV=1[more]
M5WIW5_PRUPE4.2e-3361.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019404mg PE=4 SV=1[more]
U5FF60_POPTR6.1e-3262.26Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02210g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659119171|ref|XP_008459512.1|9.1e-4580.91PREDICTED: probable carboxylesterase 18 [Cucumis melo][more]
gi|449447535|ref|XP_004141523.1|5.0e-4379.09PREDICTED: probable carboxylesterase 18 isoform X2 [Cucumis sativus][more]
gi|778707738|ref|XP_011656048.1|5.0e-4379.09PREDICTED: probable carboxylesterase 18 isoform X1 [Cucumis sativus][more]
gi|659119173|ref|XP_008459513.1|1.3e-3873.15PREDICTED: probable carboxylesterase 18 [Cucumis melo][more]
gi|778730917|ref|XP_011659884.1|1.8e-3766.98PREDICTED: probable carboxylesterase 18 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013094AB_hydrolase_3
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012394Cla012394.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013094Alpha/beta hydrolase fold-3PFAMPF07859Abhydrolase_3coord: 2..85
score: 1.2
NoneNo IPR availablePANTHERPTHR23024MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMEScoord: 1..109
score: 1.4
NoneNo IPR availablePANTHERPTHR23024:SF174SUBFAMILY NOT NAMEDcoord: 1..109
score: 1.4