Cla012358 (gene) Watermelon (97103) v1

NameCla012358
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr8 : 2989111 .. 2989662 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCAATCGTTGCACTGCTTAAAAATGAAAAACTAACTGGTGAAAACTACATAACATGGAAATCTAACCTAAATACAATTCTGGTTATAGATGATCTACAATTTGTCTTAACGGAGGAGTGTCCTCCTATCCCCGCTTGTAATGCTTCCCAATATGTTAGGGATGCATATGACCGTTTGACAAAGGCCAATGACAAGGCCCGAGTCTATATCTTGACGAGTCTATCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTTCAGGAAATGTTTGGACAAAAGTCCTCACAAATCCGACACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGGAAGACCAATTGGTGAGAGAACATGTTCTCGACCTGATGGTCCAATTCAACATTGCTGAAATGAACGACGCGGTCATTGACGAGCAGAGCCAGGTGTCTTTTATTCTAGAATCTCTTTCGAAGAGCTTTCTCCAATTCCGCAACAATGCTGTTATGAATAAAATTGTGTACACCATGCTTTGA

mRNA sequence

ATGTCTTCCTCAATCGTTGCACTGCTTAAAAATGAAAAACTAACTGGTGAAAACTACATAACATGGAAATCTAACCTAAATACAATTCTGGTTATAGATGATCTACAATTTGTCTTAACGGAGGAGTGTCCTCCTATCCCCGCTTGTAATGCTTCCCAATATGTTAGGGATGCATATGACCGTTTGACAAAGGCCAATGACAAGGCCCGAGTCTATATCTTGACGAGTCTATCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTTCAGGAAATGTTTGGACAAAAGTCCTCACAAATCCGACACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGGAAGACCAATTGGTGAGAGAACATGTTCTCGACCTGATGGTCCAATTCAACATTGCTGAAATGAACGACGCGGTCATTGACGAGCAGAGCCAGGTGTCTTTTATTCTAGAATCTCTTTCGAAGAGCTTTCTCCAATTCCGCAACAATGCTGTTATGAATAAAATTGTGTACACCATGCTTTGA

Coding sequence (CDS)

ATGTCTTCCTCAATCGTTGCACTGCTTAAAAATGAAAAACTAACTGGTGAAAACTACATAACATGGAAATCTAACCTAAATACAATTCTGGTTATAGATGATCTACAATTTGTCTTAACGGAGGAGTGTCCTCCTATCCCCGCTTGTAATGCTTCCCAATATGTTAGGGATGCATATGACCGTTTGACAAAGGCCAATGACAAGGCCCGAGTCTATATCTTGACGAGTCTATCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTTCAGGAAATGTTTGGACAAAAGTCCTCACAAATCCGACACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGGAAGACCAATTGGTGAGAGAACATGTTCTCGACCTGATGGTCCAATTCAACATTGCTGAAATGAACGACGCGGTCATTGACGAGCAGAGCCAGGTGTCTTTTATTCTAGAATCTCTTTCGAAGAGCTTTCTCCAATTCCGCAACAATGCTGTTATGAATAAAATTGTGTACACCATGCTTTGA

Protein sequence

MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYDRLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNARMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNKIVYTML
BLAST of Cla012358 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-59
Identity = 116/182 (63.74%), Postives = 147/182 (80.77%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           M++SIV LL +EKL G+NY  WKSNLNTILV+DDL+FVLTEECP  PA NA++ VR+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KANDKARVYIL S++DVL KKH+++  A+ IM+SL+EMFGQ S  +RHEA+K++Y  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNKIVY 180
           RMKE   VREHVLD+M+ FNIAE+N   IDE +QVSFIL+SL KSF+ F+ NA +NKI +
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 TM 183
            +
Sbjct: 181 NL 182

BLAST of Cla012358 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 97/164 (59.15%), Postives = 128/164 (78.05%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           M++SIV LL +EKL  +NY  WKSNLNTILV++DL+F+LTEEC   PA NA++ VR+AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KANDKA VYIL S++DVL KK++++   + IM+S +EMFGQ S  +RHEA+K +Y  
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTK 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSK 165
           RMKE   VREHVLD+M+ FNIA+++   IDE +QVSFIL+SL +
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSLRR 164

BLAST of Cla012358 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.3e-42
Identity = 90/177 (50.85%), Postives = 124/177 (70.06%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           MS+ I+ LL  EKL G+NY  WKSN+N +L+ +D +FVL +ECPP PA NA++  R+ YD
Sbjct: 1   MSNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KAN+KA+ ++L S+SDVL KKHE M  A +IMESL+ MFG  S + R +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMND 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNK 178
           +MK+   V+ HVL+++   + AE+N A IDE +Q+  ILESLS  F +F NN VMNK
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQLGIILESLSPDFHEFVNNFVMNK 177

BLAST of Cla012358 vs. TrEMBL
Match: W9S3Q9_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis GN=L484_006475 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-41
Identity = 91/177 (51.41%), Postives = 120/177 (67.80%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           MS+ I+ LL  EKL G+NY  WKSN+  +LV +D +FVL EECP  PA NAS+  R+ YD
Sbjct: 1   MSNPIITLLATEKLDGDNYAKWKSNMYILLVCEDYKFVLVEECPQDPAANASKTTREPYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           RL KAN+KA+  +L S+SDVL KKHE M  A +IMESL+ MFG  S + R +A++   N 
Sbjct: 61  RLIKANNKAKCLMLASMSDVLRKKHEEMETAYEIMESLEAMFGAPSKKARLDAVRAFMND 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNK 178
           +MK+   V+ HVL+++   +  E+N   IDE +QV  ILESLS  F +F NN VMNK
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDTELNSGRIDEATQVGIILESLSPDFHEFVNNIVMNK 177

BLAST of Cla012358 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.0e-40
Identity = 89/177 (50.28%), Postives = 121/177 (68.36%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           MS+ I+ LL  EK  G+NY  WKSN+N +LV +D +FVL EECP  PA NAS+  R+ YD
Sbjct: 1   MSNPIITLLATEKPDGDNYAKWKSNMNILLVCEDYKFVLVEECPQEPAVNASKTAREPYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KAN+KA+ ++L S+SDVL+KKHE M  A +IMESL+ +FG  S +   +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLHKKHEEMETAYEIMESLEAIFGAPSEKAHLDAVRAFMND 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNK 178
           +MK+   V+ HVL+++   + AE+N A IDE +QV  ILESLS    +F NN VMNK
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQVGIILESLSPDCHEFVNNFVMNK 177

BLAST of Cla012358 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-60
Identity = 115/182 (63.19%), Postives = 151/182 (82.97%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           M+S+ + +L  +K  G NY +WK+ +NT+L+IDDL+FVL E+CP + A NA++ VR+AY+
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KAN+KAR Y+L SLS+VL KK+E+M+ AR+IM+SLQEMFGQ S QI+H+ALKY+YNA
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNKIVY 180
           RM +  LVREHVL++MV FN+AEMN AVIDE +QVSFILESL +SFLQFR+N VMNKI Y
Sbjct: 121 RMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAY 180

Query: 181 TM 183
           T+
Sbjct: 181 TL 182

BLAST of Cla012358 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 236.9 bits (603), Expect = 2.8e-59
Identity = 116/182 (63.74%), Postives = 147/182 (80.77%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           M++SIV LL +EKL G+NY  WKSNLNTILV+DDL+FVLTEECP  PA NA++ VR+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KANDKARVYIL S++DVL KKH+++  A+ IM+SL+EMFGQ S  +RHEA+K++Y  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQFRNNAVMNKIVY 180
           RMKE   VREHVLD+M+ FNIAE+N   IDE +QVSFIL+SL KSF+ F+ NA +NKI +
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 TM 183
            +
Sbjct: 181 NL 182

BLAST of Cla012358 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 4.7e-54
Identity = 108/169 (63.91%), Postives = 136/169 (80.47%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           M+SSIV LL +EK+  +NY  WKSNLNTILV+DDL+FVLTEECP  PA NA++  R+AYD
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KAN+KARVYIL S+SDVL KKHE++  A++IM+SL+ MFGQ    +RHEA+KY+Y  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTK 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILESLSKSFLQF 170
           RMKE   VREHVLD+M+ FNIA++N  +I+E +QVSFILESL KSF+ F
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

BLAST of Cla012358 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51
Identity = 103/160 (64.38%), Postives = 124/160 (77.50%), Query Frame = 1

Query: 1   MSSSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYD 60
           M+SSIV LL  EKL G+NY  WKSNLNTILV+DDL+FVLTEECP  P+ NASQ  R AYD
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RLTKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNA 120
           R  KAN+KARVYIL S+SDVL KKHE++  A++IM SL+ MFGQ    +RHE +KY+Y  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTK 120

Query: 121 RMKEDQLVREHVLDLMVQFNIAEMNDAVIDEQSQVSFILE 161
           RMKE   ++EHVLD+M+ FNI E+N   IDE +QVSFILE
Sbjct: 121 RMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFILE 160

BLAST of Cla012358 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-48
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = 1

Query: 3   SSIVALLKNEKLTGENYITWKSNLNTILVIDDLQFVLTEECPPIPACNASQYVRDAYDRL 62
           S+ + +L  +KL G NY +WK+ +NT+L+IDDL FVL EECP +PA NA++ VR+AY+R 
Sbjct: 2   SATLNMLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERW 61

Query: 63  TKANDKARVYILTSLSDVLNKKHEAMMNARQIMESLQEMFGQKSSQIRHEALKYVYNARM 122
            KAN+KAR YIL SLS VL KKHE+M+  R+IM+SLQEMFGQ S QI+H+ALKY+YNARM
Sbjct: 62  AKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARM 121

Query: 123 KEDQLVREHVLDLMVQFNIAEMNDAVIDEQS 154
            E   VREHVL++MV FN+AEMN AVIDE S
Sbjct: 122 NEGASVREHVLNMMVHFNVAEMNGAVIDEAS 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E2GK51_BRYDI2.0e-5963.74Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI3.0e-4759.15Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA8.3e-4250.85Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9S3Q9_9ROSA2.4e-4151.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis G... [more]
W9RVT2_9ROSA6.0e-4050.28Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659113933|ref|XP_008456826.1|1.5e-6063.19PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|299474487|gb|ADJ18449.1|2.8e-5963.74gag/pol protein [Bryonia dioica][more]
gi|778697615|ref|XP_011654359.1|4.7e-5463.91PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659086056|ref|XP_008443743.1|8.2e-5164.38PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
gi|659072276|ref|XP_008464721.1|2.2e-4863.58PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012358Cla012358.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 81..101
scor
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 64..174
score: 1.9