Cla012347 (gene) Watermelon (97103) v1

Overview
NameCla012347
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRING finger-like (AHRD V1 *--- Q5Z708_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr8 : 3342987 .. 3343655 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCCGTAACACTCTGTCCCTTCGATATTGGATCGGCAGCGACCCCAACGGCAGCGTCGCCACCGACGATCAACCATTGCAATTCGTCCAACTTCGATTGGGGAGTTTCAGTGAATTAGTGCTTGCACCTTCTCACCAAATCCTCCAACAAACTTCCCCAACTCTAATTTCCGATGCTCTGTTTCCATTCTCTCTGCGGGAGCTTGAAGACCCACCATTCCTCGCCCACTACTTCCTCCTTCGTTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCCTGTGACGCCATCTTCCACAAGATCGCCTCCTTCGCCCTCCGAATGGCCGCCGGAAACCTGAATCTCAACTTCCACATCATCGCCGCTGTGGATTTGGTACACACGATCTGGGTGGACCTGGACCCAGCGCTGCTTCTTCCACAAGATTCGGAGCCGGTGAGGAAAGGGGCGCCGGCGTCGGTGATGGAGCGGTTAATGAAGGAGAAGTATGATGGGAATGGGCGGGAAGAGACGGGAGATCAGTGCAGCGTTTGTTACGAGGATCTCCATGGGGAAAAGGAGTTGGCAAGAATCCCCTGTGGACATGTGTATCATAAGCCCTGCATCCTCAAATGGCTTAACATCAACAATTCATGTCCTTTGTGCAGAAGGGAATTAGAAGAATAA

mRNA sequence

ATGTCTTTCCGTAACACTCTGTCCCTTCGATATTGGATCGGCAGCGACCCCAACGGCAGCGTCGCCACCGACGATCAACCATTGCAATTCGTCCAACTTCGATTGGGGAGTTTCAGTGAATTAGTGCTTGCACCTTCTCACCAAATCCTCCAACAAACTTCCCCAACTCTAATTTCCGATGCTCTGTTTCCATTCTCTCTGCGGGAGCTTGAAGACCCACCATTCCTCGCCCACTACTTCCTCCTTCGTTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCCTGTGACGCCATCTTCCACAAGATCGCCTCCTTCGCCCTCCGAATGGCCGCCGGAAACCTGAATCTCAACTTCCACATCATCGCCGCTGTGGATTTGGTACACACGATCTGGGTGGACCTGGACCCAGCGCTGCTTCTTCCACAAGATTCGGAGCCGGTGAGGAAAGGGGCGCCGGCGTCGGTGATGGAGCGGTTAATGAAGGAGAAGTATGATGGGAATGGGCGGGAAGAGACGGGAGATCAGTGCAGCGTTTGTTACGAGGATCTCCATGGGGAAAAGGAGTTGGCAAGAATCCCCTGTGGACATGTGTATCATAAGCCCTGCATCCTCAAATGGCTTAACATCAACAATTCATGTCCTTTGTGCAGAAGGGAATTAGAAGAATAA

Coding sequence (CDS)

ATGTCTTTCCGTAACACTCTGTCCCTTCGATATTGGATCGGCAGCGACCCCAACGGCAGCGTCGCCACCGACGATCAACCATTGCAATTCGTCCAACTTCGATTGGGGAGTTTCAGTGAATTAGTGCTTGCACCTTCTCACCAAATCCTCCAACAAACTTCCCCAACTCTAATTTCCGATGCTCTGTTTCCATTCTCTCTGCGGGAGCTTGAAGACCCACCATTCCTCGCCCACTACTTCCTCCTTCGTTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCCTGTGACGCCATCTTCCACAAGATCGCCTCCTTCGCCCTCCGAATGGCCGCCGGAAACCTGAATCTCAACTTCCACATCATCGCCGCTGTGGATTTGGTACACACGATCTGGGTGGACCTGGACCCAGCGCTGCTTCTTCCACAAGATTCGGAGCCGGTGAGGAAAGGGGCGCCGGCGTCGGTGATGGAGCGGTTAATGAAGGAGAAGTATGATGGGAATGGGCGGGAAGAGACGGGAGATCAGTGCAGCGTTTGTTACGAGGATCTCCATGGGGAAAAGGAGTTGGCAAGAATCCCCTGTGGACATGTGTATCATAAGCCCTGCATCCTCAAATGGCTTAACATCAACAATTCATGTCCTTTGTGCAGAAGGGAATTAGAAGAATAA

Protein sequence

MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISDALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFHIIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREETGDQCSVCYEDLHGEKELARIPCGHVYHKPCILKWLNINNSCPLCRRELEE
Homology
[Close]
BLAST of Cla012347 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-11
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1 

Query: 143 DSEPVRKGAPA---SVMERLMKEKYDGNGREETGDQCSVCYEDLHGEKELARIPCGHVYH 202
           +++P R G P    S +E L       +      +QC+VC +D     E  ++PC H+YH
Sbjct: 188 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 247

Query: 203 KPCILKWLNINNSCPLCRREL 221
           K C+L WL ++NSCP+CR EL
Sbjct: 248 KDCLLPWLELHNSCPVCRHEL 268

[Close]
BLAST of Cla012347 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 28/81 (34.57%), Postives = 47/81 (58.02%), Query Frame = 1 

Query: 143 DSEPVRKGAPA---SVMERLMKEKYDGNGREETGDQCSVCYEDLHGEKELARIPCGHVYH 202
           +++P R G P    S ++ L   K   +  +   +QC+VC ++     ++ ++PC HV+H
Sbjct: 180 ENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFH 239

Query: 203 KPCILKWLNINNSCPLCRREL 221
           + C+L WL ++NSCP+CR EL
Sbjct: 240 QDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of Cla012347 vs. Swiss-Prot
Match: RNF6_MOUSE (E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-09
Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 1 

Query: 138 LLLPQDSEPVRKGAPASVMERLMKEKYDGNGRE-ETGDQCSVCYEDLHGEKELARIPCGH 197
           LL   D +P+R G     ++ L    Y+ +G + E G  CSVC  D     +L ++PC H
Sbjct: 576 LLNEGDDDPIR-GLTKEQIDNLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLH 635

Query: 198 VYHKPCILKWLNINNSCPLCRRELEE 223
            +H  CI +WL+ N +CP+CRR + E
Sbjct: 636 EFHIHCIDRWLSENCTCPVCRRPVLE 660

[Close]
BLAST of Cla012347 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 26/70 (37.14%), Postives = 36/70 (51.43%), Query Frame = 1 

Query: 151 APASVMERLMKEKYDGNGREETGDQCSVCYEDLHGEKELARIPCGHVYHKPCILKWLNIN 210
           AP S ++ L   K        +   C VC ++     E  ++PC H+YH  CI+ WL  +
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQH 224

Query: 211 NSCPLCRREL 221
           NSCP+CR+EL
Sbjct: 225 NSCPVCRQEL 234

[Close]
BLAST of Cla012347 vs. Swiss-Prot
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 1 

Query: 149 KGAPASVMERLMKEKY-DGNGREETGDQCSVCYEDLHGEKELARIPCGHVYHKPCILKWL 208
           +G  A  +  L  ++Y +G+ +  T + C +C  D   +++L  +PC H YH  CI  WL
Sbjct: 260 RGLSADTIASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWL 319

Query: 209 NINNSCPLCRREL 221
            IN  CP+C  E+
Sbjct: 320 KINKVCPVCSAEV 332

[Close]
BLAST of Cla012347 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.9e-80
Identity = 154/225 (68.44%), Postives = 178/225 (79.11%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS   T S R  I  + NGS AT+ QPLQFV+LRLG FS+LVL+PSHQILQQTSP LISD
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFHI 120
            L  F LRELEDPPF++H  L RFLSS+N+S A CDAIF KI+SFA ++ AGNLN NFHI
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHI 120

Query: 121 IAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREETGDQCSVCY 180
           IAA+D V+T WVDLDPA    +D+  VR+GAP S +ERLMKEKYDGNG EE  D+CSVCY
Sbjct: 121 IAALDFVYTHWVDLDPA----EDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCY 180

Query: 181 EDLHG----EKELARIPCGHVYHKPCILKWLNINNSCPLCRRELE 222
           EDLHG    EKE++RIPCGH++HK CILKWL I+NSCPLCR ELE
Sbjct: 181 EDLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of Cla012347 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 151/235 (64.26%), Postives = 177/235 (75.32%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS   T S +  I  +   S+ATD QPLQFVQLRL  F +LV  PS QILQQTSPTLISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFA---LRMAAGNLNLN 120
            L PFSL ELEDPPF++++FL RFLSS+++SAA CDAIF+ I+SFA   L  A  N+N+N
Sbjct: 61  TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120

Query: 121 FHIIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREET--GDQ 180
           FHIIA VD+V+T WVDLDPA    +D+  VRKGA  SV+ER+MKEKYDGNG EE    DQ
Sbjct: 121 FHIIADVDIVYTHWVDLDPA----EDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQ 180

Query: 181 CSVCYEDLHG--------EKELARIPCGHVYHKPCILKWLNINNSCPLCRRELEE 223
           CSVCYE L+G        EKE++RIPCGH+YHK CILKWL I+NSCPLCRRELEE
Sbjct: 181 CSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]
BLAST of Cla012347 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-54
Identity = 133/226 (58.85%), Postives = 155/226 (68.58%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS    LSL   + S P     T D+  Q V++RL  FS+LV   S+Q +QQT PT IS+
Sbjct: 1   MSSTTNLSLDCCVRSIPT----TADK--QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60

Query: 61  ALFPFSLRELE-DPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFH 120
           ALF F L ELE + P L H FLL+FLS      A   AIFH I+SFAL++AAGNLNLNFH
Sbjct: 61  ALFHFPLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFH 120

Query: 121 IIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYD-GNGREETGDQCSV 180
           +IA VDL++TI ++L+  L  PQ S PVR G PASVMERLM EKYD GNG E  G QC V
Sbjct: 121 LIATVDLLYTISINLN--LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCV 180

Query: 181 CYEDLHGEKE-----LARIPCGHVYHKPCILKWLNINNSCPLCRRE 220
           CYEDL+ E+E       RIPCGHVYHK CILKWLN+NNSCPLCR E
Sbjct: 181 CYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]
BLAST of Cla012347 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 85/229 (37.12%), Postives = 124/229 (54.15%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MSF  +  ++Y + +   G        + F+Q ++ S S L   P H++L QT      +
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQ-QIISVSPLTGRP-HEVLHQTPRIPYHN 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFHI 120
           ALF  SLR+L+ P F    ++ + LSS N+  AA   +  +IAS  L+M   N   NFHI
Sbjct: 61  ALFYLSLRQLQSPLF----YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 121 IAAVDLVHTIWV--------DLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREET 180
           +A VD +  IW+          +  ++L +    V++G   +  ERL  E+      EE 
Sbjct: 121 LAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE----KMEEL 180

Query: 181 GDQCSVCYEDLHGEK-ELARIPCGHVYHKPCILKWLNINNSCPLCRREL 221
           GD CS+C ++L  EK E+ RIPCGHVYH+ CI KWL  +NSCPLCR+ L
Sbjct: 181 GD-CSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cla012347 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 85/229 (37.12%), Postives = 124/229 (54.15%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MSF  +  ++Y + +   G        + F+Q ++ S S L   P H++L QT      +
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQ-QIISVSPLTGRP-HEVLHQTPRIPYHN 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFHI 120
           ALF  SLR+L+ P F    ++ + LSS N+  AA   +  +IAS  L+M   N   NFHI
Sbjct: 61  ALFYLSLRQLQSPLF----YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 121 IAAVDLVHTIWV--------DLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREET 180
           +A VD +  IW+          +  ++L +    V++G   +  ERL  E+      EE 
Sbjct: 121 LAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE----KMEEL 180

Query: 181 GDQCSVCYEDLHGEK-ELARIPCGHVYHKPCILKWLNINNSCPLCRREL 221
           GD CS+C ++L  EK E+ RIPCGHVYH+ CI KWL  +NSCPLCR+ L
Sbjct: 181 GD-CSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cla012347 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 2.7e-80
Identity = 154/225 (68.44%), Postives = 178/225 (79.11%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS   T S R  I  + NGS AT+ QPLQFV+LRLG FS+LVL+PSHQILQQTSP LISD
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFHI 120
            L  F LRELEDPPF++H  L RFLSS+N+S A CDAIF KI+SFA ++ AGNLN NFHI
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHI 120

Query: 121 IAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREETGDQCSVCY 180
           IAA+D V+T WVDLDPA    +D+  VR+GAP S +ERLMKEKYDGNG EE  D+CSVCY
Sbjct: 121 IAALDFVYTHWVDLDPA----EDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCY 180

Query: 181 EDLHG----EKELARIPCGHVYHKPCILKWLNINNSCPLCRRELE 222
           EDLHG    EKE++RIPCGH++HK CILKWL I+NSCPLCR ELE
Sbjct: 181 EDLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of Cla012347 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.2e-74
Identity = 151/235 (64.26%), Postives = 177/235 (75.32%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS   T S +  I  +   S+ATD QPLQFVQLRL  F +LV  PS QILQQTSPTLISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFA---LRMAAGNLNLN 120
            L PFSL ELEDPPF++++FL RFLSS+++SAA CDAIF+ I+SFA   L  A  N+N+N
Sbjct: 61  TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120

Query: 121 FHIIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREET--GDQ 180
           FHIIA VD+V+T WVDLDPA    +D+  VRKGA  SV+ER+MKEKYDGNG EE    DQ
Sbjct: 121 FHIIADVDIVYTHWVDLDPA----EDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQ 180

Query: 181 CSVCYEDLHG--------EKELARIPCGHVYHKPCILKWLNINNSCPLCRRELEE 223
           CSVCYE L+G        EKE++RIPCGH+YHK CILKWL I+NSCPLCRRELEE
Sbjct: 181 CSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]
BLAST of Cla012347 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 2.4e-60
Identity = 144/228 (63.16%), Postives = 162/228 (71.05%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS   TLSL   I S    SVAT     Q V++RL  +S+LV   S+QI+QQT PT ISD
Sbjct: 1   MSSTTTLSLECCIHS----SVATTADE-QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISD 60

Query: 61  ALFPFSLRELE--DPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNF 120
           ALF F L ELE  +PPF  H  LL+FLS      A   AIFH I+SFAL++AAGNLNLNF
Sbjct: 61  ALFHFPLPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNF 120

Query: 121 HIIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYD-GNGREETGDQCS 180
           H+IA VDL++TI VDLD  L  PQ S  VR GAPASV+ERLM EKYD GNGREE GDQC 
Sbjct: 121 HLIATVDLLYTISVDLD--LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCC 180

Query: 181 VCYEDLH------GEKELARIPCGHVYHKPCILKWLNINNSCPLCRRE 220
           VCYEDL+       E+E+ RIPCGHVYHK CILKWLNINNSCPLCRRE
Sbjct: 181 VCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 216

[Close]
BLAST of Cla012347 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 133/226 (58.85%), Postives = 155/226 (68.58%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS    LSL   + S P     T D+  Q V++RL  FS+LV   S+Q +QQT PT IS+
Sbjct: 1   MSSTTNLSLDCCVRSIPT----TADK--QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60

Query: 61  ALFPFSLRELE-DPPFLAHYFLLRFLSSFNLSAAACDAIFHKIASFALRMAAGNLNLNFH 120
           ALF F L ELE + P L H FLL+FLS      A   AIFH I+SFAL++AAGNLNLNFH
Sbjct: 61  ALFHFPLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFH 120

Query: 121 IIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYD-GNGREETGDQCSV 180
           +IA VDL++TI ++L+  L  PQ S PVR G PASVMERLM EKYD GNG E  G QC V
Sbjct: 121 LIATVDLLYTISINLN--LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCV 180

Query: 181 CYEDLHGEKE-----LARIPCGHVYHKPCILKWLNINNSCPLCRRE 220
           CYEDL+ E+E       RIPCGHVYHK CILKWLN+NNSCPLCR E
Sbjct: 181 CYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]
BLAST of Cla012347 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 95/224 (42.41%), Postives = 122/224 (54.46%), Query Frame = 1 

Query: 1   MSFRNTLSLRYWIGSDPNGSVATDDQPLQFVQLRLGSFSELVLAPSHQILQQTSPTLISD 60
           MS   + S +    + PN    TD     F+  R G  S L++    QILQQT   L+ +
Sbjct: 1   MSLSTSSSFQCSFSATPN----TD----HFLICRFGYSSRLIIVD--QILQQTPSILMGE 60

Query: 61  ALFPFSLRELEDPPFLAHYFLLRFLSSFNLS--AAACDAIFHKIASFALRMAAGNLNLNF 120
            L PFS     +      + +  FL SFNL   A+A   I  KI SFAL+    N++ +F
Sbjct: 61  TLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFH--NVHGSF 120

Query: 121 HIIAAVDLVHTIWVDLDPALLLPQDSEPVRKGAPASVMERLMKEKYDGNGREETGDQCSV 180
            I A V+ V  + +        P  S P   GAP S +ERL KEK+D   +EE    CSV
Sbjct: 121 KIEANVEHVEDLIIGEQGFQETP--SPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSV 180

Query: 181 CYEDLHGE-KELARIPCGHVYHKPCILKWLNINNSCPLCRRELE 222
           CYE+L G+ KE++RIPCGHVYHK CIL WL INNSCPLCR  L+
Sbjct: 181 CYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

The following BLAST results are available for this feature:
BLAST of Cla012347 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RING1_GOSHI5.9e-1138.27E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RNG1L_ARATH8.6e-1034.57E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RNF6_MOUSE9.5e-0937.21E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1[more]
RHC1A_ARATH1.6e-0837.14Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
BBR_ARATH1.6e-0834.25E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1[more]
BLAST of Cla012347 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA1.9e-8068.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA1.5e-7464.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA1.4e-5458.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0K696_CUCSA1.4e-2737.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA1.4e-2737.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
BLAST of Cla012347 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|2.7e-8068.44PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|2.2e-7464.26hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|2.4e-6063.16PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|1.9e-5458.85PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|659121671|ref|XP_008460768.1|2.2e-2942.41PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012347Cla012347.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 174..217
score: 1.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 176..216
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 176..217
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 171..220
score: 9.2
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 34..221
score: 2.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 175..220
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla012347Cla97C08G146230Watermelon (97103) v2wmwmbB101
Cla012347ClCG08G002180Watermelon (Charleston Gray)wcgwmB401
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla012347Cucurbita maxima (Rimu)cmawmB016