Cla012285 (gene) Watermelon (97103) v1

NameCla012285
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
LocationChr6 : 19149375 .. 19150132 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGTTTAAAGAAACAGTACGACGCATTATTAGAGATGTTAAGTCAGTCGGGGTTTGGGTGGAACGAGGAGTTCAAATGTGTCAGGTTCGGGTAAGATTCTAGAAAAAAAAATATGCTGGTATGTGTTATTATAGAAATATTAATAATGTTTATGTGTATTAATGCATAGTCATCCCAGTGTGAAAGGGATATGGAACAAGCTATTCCCCCATTATGATGACCTCTCGTATCTGGGAAAAGACAGAGCAATAGGACAATTAAGTGAGGACCCATACGTGATGGCAACGAATGCATTCAAAGAGTTTGAAGATGAGATTCGACTTGAATCACAGGATTGTCACACACCTGAGGTTTACCAGACATAATCTCCATTAAATCAAGATGGACCCAATGAAGAGTCAGCAGAGCAATCTACAGGTAGAGTGAGTGTACCTGTCGAGTCATCTCGAGGCAGCAAGAGGAAGAGGTCATCATCATGCTGAAATGATGGACATCATGAGATCAATTATTGAAATGCAGAACACACACATGGGTAGACTTGCAACATGCCAGAAGAAAAAGTATAAGTTGGAGTTTGGGCATCGGAAGAAAGTAGTGAACGCCATATACAACATTGATGGCTTGAATAAGGATGATCAGGTCACCCTTATTGACCTCCTTATCACAGACATTCAGAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACAGAAGAGGTACTATCTTCGTCTACTAGGACGAAACATGTAG

mRNA sequence

ATGAGGAGTTTAAAGAAACAGTACGACGCATTATTAGAGATGTTAAGTCAGTCGGGGTTTGGGTGGAACGAGGAGTTCAAATGTGTCAGGTTCGGTCATCCCAGTGTGAAAGGGATATGGAACAAGCTATTCCCCCATTATGATGACCTCTCGTATCTGGGAAAAGACAGAGCAATAGGACAATTAAGTGAGGACCCATACGTGATGGCAACGAATGCATTCAAAGAGTTTGAAGATGAGATTCGACTTGAATCACAGGATTGTCACACACCTGAGGCAGCAAGAGGAAGAGGTCATCATCATGCTGAAATGATGGACATCATGAGATCAATTATTGAAATGCAGAACACACACATGGGTAGACTTGCAACATGCCAGAAGAAAAAGTATAAGTTGGAGTTTGGGCATCGGAAGAAAGTAGTGAACGCCATATACAACATTGATGGCTTGAATAAGGATGATCAGGTCACCCTTATTGACCTCCTTATCACAGACATTCAGAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACAGAAGAGGTACTATCTTCGTCTACTAGGACGAAACATGTAG

Coding sequence (CDS)

ATGAGGAGTTTAAAGAAACAGTACGACGCATTATTAGAGATGTTAAGTCAGTCGGGGTTTGGGTGGAACGAGGAGTTCAAATGTGTCAGGTTCGGTCATCCCAGTGTGAAAGGGATATGGAACAAGCTATTCCCCCATTATGATGACCTCTCGTATCTGGGAAAAGACAGAGCAATAGGACAATTAAGTGAGGACCCATACGTGATGGCAACGAATGCATTCAAAGAGTTTGAAGATGAGATTCGACTTGAATCACAGGATTGTCACACACCTGAGGCAGCAAGAGGAAGAGGTCATCATCATGCTGAAATGATGGACATCATGAGATCAATTATTGAAATGCAGAACACACACATGGGTAGACTTGCAACATGCCAGAAGAAAAAGTATAAGTTGGAGTTTGGGCATCGGAAGAAAGTAGTGAACGCCATATACAACATTGATGGCTTGAATAAGGATGATCAGGTCACCCTTATTGACCTCCTTATCACAGACATTCAGAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACAGAAGAGGTACTATCTTCGTCTACTAGGACGAAACATGTAG

Protein sequence

MRSLKKQYDALLEMLSQSGFGWNEEFKCVRFGHPSVKGIWNKLFPHYDDLSYLGKDRAIGQLSEDPYVMATNAFKEFEDEIRLESQDCHTPEAARGRGHHHAEMMDIMRSIIEMQNTHMGRLATCQKKKYKLEFGHRKKVVNAIYNIDGLNKDDQVTLIDLLITDIQKTDCFLAVPEHAQKRYYLRLLGRNM
BLAST of Cla012285 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1

Query: 1   MRSLKKQYDALLEMLSQ--SGFGWNEEFKCV--------RFGHPSVKGIWNKLFPHYDDL 60
           ++ +K+ + AL EM     SGFGWN+E KC+         + HP+ KG+ NK F HYD+L
Sbjct: 425 IKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDEL 484

Query: 61  SYL-GKDRAIGQLSE 65
           SY+ GKDRA G  +E
Sbjct: 485 SYVFGKDRATGGRAE 499

BLAST of Cla012285 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-17
Identity = 70/228 (30.70%), Postives = 108/228 (47.37%), Query Frame = 1

Query: 1   MRSLKKQYDALLEML--SQSGFGWNEEFKCVRF----------GHPSVKGIWNKLFPHYD 60
           ++SLKK Y A+ EM   S SGFGWNEEF+C+             HP+ KG+ +K FP+YD
Sbjct: 71  VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYD 130

Query: 61  DLSYL-GKDRAIGQLS-------------------------EDPYVMATNAFKEFEDEI- 120
           DLSY+ GKDRA G  S                         ED   M +       DE+ 
Sbjct: 131 DLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMF 190

Query: 121 ------RLESQDCHTPEAARGRGHHHAEMMDIMRSIIEMQNTHMGRLATCQKKKYKLEFG 180
                   E ++C +  + R RG    E ++++RS++E  N  +  +A   K+K  +E  
Sbjct: 191 GIRAGQASERRNCSSV-SKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVE 250

Query: 181 HRKKVVNAIYNIDGLNKDDQVTLIDLLITDIQKTDCFLAVPEHAQKRY 184
            R +VV  + +I  L   D+  L+ +L   ++  + FL++P   +  Y
Sbjct: 251 MRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 297

BLAST of Cla012285 vs. NCBI nr
Match: gi|764568427|ref|XP_011462325.1| (PREDICTED: uncharacterized protein At2g29880-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 63/227 (27.75%), Postives = 103/227 (45.37%), Query Frame = 1

Query: 1   MRSLKKQYDALLEML-SQSGFGWNEEFKCVRF-------------GHPSVKGIWNKLFPH 60
           +++LKKQY+A+ +M+ S SGF WN+E K +                HP+ KG+W K FPH
Sbjct: 84  VKTLKKQYNAITDMIVSSSGFSWNDEKKMIICEKDLYDGWVKIWQSHPAAKGMWMKPFPH 143

Query: 61  YDDL-SYLGKDRAIGQLSEDPYVMATNAFKEFEDEIRLESQDCH-------TPEAARGRG 120
           +D+L +  GKDRA G+        A NA  ++ DEI L +           TP      G
Sbjct: 144 FDNLGNVFGKDRANGK-------QAANA-TDYIDEIDLNNDGLEEIAEMMTTPPPVAAEG 203

Query: 121 HHHA-----------------EMMDIMRSIIEMQNTHMGRLATCQKKKYKLEFGHRKKVV 180
            + A                 +M+  M   IE  +  +G LA         EF   ++V 
Sbjct: 204 LNEAPRNRKRKRTDAYVLGLTQMVGAMSKTIEAMDKLVGSLA---------EFDPMRQVY 263

Query: 181 NAIYNIDGLNKDDQVTLIDLLITDIQKTDCFLAVPEHAQKRYYLRLL 189
           + +  ++GL+   ++ +  +++ D  K    L++PE  +K +   LL
Sbjct: 264 DEVSKVEGLSTSSKLKVSQIIMADPVKVSLLLSLPEDVKKEWVEELL 293

BLAST of Cla012285 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 1

Query: 1   MRSLKKQYDALLEML--SQSGFGWNEEFKCVRF----------GHPSVKGIWNKLFPHYD 60
           ++SLKK Y A+ EM   S SGFGWNEEF+C+             HP+ KG+ +K FP+YD
Sbjct: 20  VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYD 79

Query: 61  DLSYL-GKDRAIGQLSEDPYVMATNAFKEFEDEIRL-ESQDCHTP 92
           DL+Y+ GKDRA G  SE    + +N    F D I L +S D   P
Sbjct: 80  DLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIP 124

BLAST of Cla012285 vs. NCBI nr
Match: gi|1021039058|gb|KZM96839.1| (hypothetical protein DCAR_015799 [Daucus carota subsp. sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = 1

Query: 1   MRSLKKQYDALLEMLSQ--SGFGWNEEFKCVRF----------GHPSVKGIWNKLFPHYD 60
           +R L+KQ+ A+ EM     SGFGWNE  K +             HP+ KG+ NK FP YD
Sbjct: 82  VRLLRKQFFAIEEMRGPNCSGFGWNELEKSITCEKSIFEEWLKSHPNAKGLRNKSFPFYD 141

Query: 61  DLSYL-GKDRAIGQLSEDP---------------YVMATNAFKEFEDEIRLESQDCHTPE 120
           +L+ + GKDRA G+  E P               Y  A       EDE+   +    T  
Sbjct: 142 ELAQVFGKDRANGEGVESPADAVEEIANDEESNLYQQAGQQKDNLEDEVSPRNVQ-PTDT 201

Query: 121 AARGRGHHHAEMMDIMR----------SIIEMQNTHMGRLATCQKKKYKLEFGHRKKVVN 180
            ARG      + ++I++          +++E +  ++ +L +C   +++ +  +++ +VN
Sbjct: 202 GARGSKRIKTDSLEIVKELTFGLQKISNVMETEYENIAKLTSC--FQHESDGANKRMMVN 261

Query: 181 A-IYNIDGLNKDDQVTLIDLLITDIQKTDCFLAVPEHAQKRYYLRLL 189
           + +  I+GL+ D  +     +  D  +TD F ++PE  +  Y   LL
Sbjct: 262 SELLKIEGLSPDQFIKAGRKIALDPLETDYFFSLPEDYRSTYVQALL 305

BLAST of Cla012285 vs. NCBI nr
Match: gi|731360972|ref|XP_010692107.1| (PREDICTED: uncharacterized protein LOC104905313 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 69.3 bits (168), Expect = 8.2e-09
Identity = 62/238 (26.05%), Postives = 102/238 (42.86%), Query Frame = 1

Query: 1   MRSLKKQYDALLEML--SQSGFGWNEEFKCVRF----------GHPSVKGIWNKLFPHYD 60
           ++ L+KQYDA+ EML  S SGFGWN+E K V             H +  G+ NK FP Y+
Sbjct: 78  VKHLRKQYDAITEMLSPSASGFGWNDEEKFVTCPQAVWDEWIKSHKNAAGLRNKPFPFYE 137

Query: 61  DLSYL-GKDRAIGQLSEDPYVMATNAFKEFEDEIRLESQ--------------------- 120
           +L  + GKDRA+G  S   Y    +  +E E   R+E +                     
Sbjct: 138 ELGKIWGKDRAVGNESGTVY----DVLQEMEHGARVEEEHQVPDLNAEESNSPTQCDPTG 197

Query: 121 ------DCHTPEAARGRGHHHAEMMDIMR----------SIIEMQNTHMGRLATCQKKKY 180
                    TP ++R +     E ++ ++           ++E    H+GRLA C + + 
Sbjct: 198 PPSSTPQSTTPSSSRTK-RARTETIEALKEFSTKIGKISDVMEAATEHIGRLANCFQHES 257

Query: 181 KLEFGHRKKVVNAIYNIDGLNKDDQVTLIDLLITDIQKTDCFLAVPEHAQKRYYLRLL 189
                 R K+   I  ++GL+  + +     +  +  + D F ++PE+ +  Y   LL
Sbjct: 258 D-SADRRMKLTTEIMKMEGLSPSEVLLASKKIALNPLEVDFFFSLPENFKYAYVQGLL 309

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCB5_CUCME3.1e-0745.33Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659082641|ref|XP_008441954.1|1.6e-1730.70PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|764568427|ref|XP_011462325.1|1.4e-1127.75PREDICTED: uncharacterized protein At2g29880-like [Fragaria vesca subsp. vesca][more]
gi|659111565|ref|XP_008455793.1|1.1e-1044.76PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|1021039058|gb|KZM96839.1|1.3e-0927.31hypothetical protein DCAR_015799 [Daucus carota subsp. sativus][more]
gi|731360972|ref|XP_010692107.1|8.2e-0926.05PREDICTED: uncharacterized protein LOC104905313 [Beta vulgaris subsp. vulgaris][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012285Cla012285.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla012285Cucurbita pepo (Zucchini)cpewmB128
Cla012285Cucurbita pepo (Zucchini)cpewmB372
Cla012285Cucurbita pepo (Zucchini)cpewmB679
Cla012285Cucurbita pepo (Zucchini)cpewmB681
Cla012285Bottle gourd (USVL1VR-Ls)lsiwmB120
Cla012285Bottle gourd (USVL1VR-Ls)lsiwmB225
Cla012285Bottle gourd (USVL1VR-Ls)lsiwmB415
Cla012285Cucumber (Gy14) v2cgybwmB161
Cla012285Melon (DHL92) v3.6.1medwmB249
Cla012285Melon (DHL92) v3.6.1medwmB288
Cla012285Melon (DHL92) v3.6.1medwmB425
Cla012285Silver-seed gourdcarwmB0040
Cla012285Silver-seed gourdcarwmB0042
Cla012285Silver-seed gourdcarwmB0126
Cla012285Silver-seed gourdcarwmB0570
Cla012285Cucumber (Chinese Long) v3cucwmB180
Cla012285Cucumber (Chinese Long) v3cucwmB646
Cla012285Watermelon (97103) v2wmwmbB390
Cla012285Watermelon (97103) v2wmwmbB406
Cla012285Wax gourdwgowmB152
Cla012285Wax gourdwgowmB649
Cla012285Wax gourdwgowmB684
Cla012285Watermelon (97103) v1wmwmB034
Cla012285Watermelon (97103) v1wmwmB165
Cla012285Cucumber (Gy14) v1cgywmB177
Cla012285Cucurbita maxima (Rimu)cmawmB071
Cla012285Cucurbita maxima (Rimu)cmawmB138
Cla012285Cucurbita maxima (Rimu)cmawmB143
Cla012285Cucurbita maxima (Rimu)cmawmB775
Cla012285Cucurbita moschata (Rifu)cmowmB063
Cla012285Cucurbita moschata (Rifu)cmowmB124
Cla012285Cucurbita moschata (Rifu)cmowmB128
Cla012285Cucurbita moschata (Rifu)cmowmB769
Cla012285Melon (DHL92) v3.5.1mewmB257
Cla012285Melon (DHL92) v3.5.1mewmB293
Cla012285Melon (DHL92) v3.5.1mewmB439
Cla012285Watermelon (Charleston Gray)wcgwmB111
Cla012285Watermelon (Charleston Gray)wcgwmB344
Cla012285Cucumber (Chinese Long) v2cuwmB168
Cla012285Cucumber (Chinese Long) v2cuwmB615