Cla012162 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012162
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 15392222 .. 15392587 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGCAGCATATCAGTAGCATTCCATTAGAAACCAAGGCATCATCAAGAATAATAATGGAGAATATGAAGAAGAAGAAGAAGAAGAAGCAGCAGGAAAACGATGATGATCAGCCATTAACATGGAGAAGCAAGACCATGGGTGAGAGCTTAGAAGAAATCTCAAAGGAAATCTCATGGGGACTCAAACATGAAATGGCAAAAATAGGTATGGCTTTACAACATCACATTTACAAAGACTTGATTGACGAGATGCTCATTGATATTATGCCTTTTTCTTCTGCTTATTATTCCTCCTTTCTCATCCCCTTTGATTCTTCTAACCCTCCATTTGAAGCATGTAGGAGAAGACTGCGTTTCTAG

mRNA sequence

ATGAAGTTGCAGCATATCAGTAGCATTCCATTAGAAACCAAGGCATCATCAAGAATAATAATGGAGAATATGAAGAAGAAGAAGAAGAAGAAGCAGCAGGAAAACGATGATGATCAGCCATTAACATGGAGAAGCAAGACCATGGGTGAGAGCTTAGAAGAAATCTCAAAGGAAATCTCATGGGGACTCAAACATGAAATGGCAAAAATAGGTATGGCTTTACAACATCACATTTACAAAGACTTGATTGACGAGATGCTCATTGATATTATGCCTTTTTCTTCTGCTTATTATTCCTCCTTTCTCATCCCCTTTGATTCTTCTAACCCTCCATTTGAAGCATGTAGGAGAAGACTGCGTTTCTAG

Coding sequence (CDS)

ATGAAGTTGCAGCATATCAGTAGCATTCCATTAGAAACCAAGGCATCATCAAGAATAATAATGGAGAATATGAAGAAGAAGAAGAAGAAGAAGCAGCAGGAAAACGATGATGATCAGCCATTAACATGGAGAAGCAAGACCATGGGTGAGAGCTTAGAAGAAATCTCAAAGGAAATCTCATGGGGACTCAAACATGAAATGGCAAAAATAGGTATGGCTTTACAACATCACATTTACAAAGACTTGATTGACGAGATGCTCATTGATATTATGCCTTTTTCTTCTGCTTATTATTCCTCCTTTCTCATCCCCTTTGATTCTTCTAACCCTCCATTTGAAGCATGTAGGAGAAGACTGCGTTTCTAG

Protein sequence

MKLQHISSIPLETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEISWGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLRF

Homology

[Close]

BLAST of Cla012162 vs. TrEMBL
Match: A0A0A0L3D7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416180 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-41
Identity = 98/122 (80.33%), Postives = 102/122 (83.61%), Query Frame = 1


Query: 1   MKLQHISSIP-LETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEI 60
           MKLQ +SSI  LE KASSRIIME +  KKKKKQQE D+DQPLTWRSK MGESLEEISKEI
Sbjct: 292 MKLQQMSSIDHLEAKASSRIIME-INMKKKKKQQEKDEDQPLTWRSKAMGESLEEISKEI 351

Query: 61  SWGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRL 120
           SWGLKHEMAKIGMALQHHIY DLIDEML DIM FSS  +SSF     SS PPFEACRRRL
Sbjct: 352 SWGLKHEMAKIGMALQHHIYGDLIDEMLTDIMHFSST-FSSF---HSSSIPPFEACRRRL 408

Query: 121 RF 122
           RF
Sbjct: 412 RF 408

[Close]

BLAST of Cla012162 vs. TrEMBL
Match: M5WCZ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021795mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 40  PLTWRSKTMGESLEEISKEISWGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYS 99
           PL W S  M ES+EE+ ++I+WG + E+ +IG+ALQ HIYKDLI EM+ + M +S  Y  
Sbjct: 286 PLIWNSNAMRESVEEVCRDIAWGERREIGRIGLALQDHIYKDLIQEMVTE-MGYSYVY-- 345

Query: 100 SFLIPFDSSNPPFEACRRRLRF 122
                    + PFEAC+RRLRF
Sbjct: 346 ---------SLPFEACKRRLRF 355

[Close]

BLAST of Cla012162 vs. TrEMBL
Match: V7CUM7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G101500g PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-11
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 4   QHISSIPLETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEISWGL 63
           Q +   P E + SS  + E M  +   K+  ND+D  + W SK M +S++E+ ++I WG 
Sbjct: 236 QQLLKKPGEEEISSIYMYERMACESLNKKV-NDEDHLVMWSSKAMIKSVDEVCRDIEWGE 295

Query: 64  KHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLRF 122
           K E+ +IG+ALQ +I KDLI+E++ D+      +Y+           PFEAC+RRL F
Sbjct: 296 KRELGRIGLALQDYICKDLIEEIVRDL----GCFYTL----------PFEACKRRLCF 338

[Close]

BLAST of Cla012162 vs. TrEMBL
Match: A0A0L9U784_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g204500 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-11
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 4   QHISSIPLETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEISWGL 63
           Q +   P E + SS  I E M  +   K+  +D+D  + W SK M +S++E+ +++ WG 
Sbjct: 236 QQLLKKPGEEEISSTYIYERMTCESGYKKV-SDEDHLVMWSSKAMIKSVDEVCRDVDWGE 295

Query: 64  KHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLRF 122
           K E+ +IG+ALQ +I KDLI+E++ D+      +Y+           PFEACRRRL F
Sbjct: 296 KRELGRIGLALQDYICKDLIEEIVRDL----GCFYTL----------PFEACRRRLCF 338

[Close]

BLAST of Cla012162 vs. TrEMBL
Match: A0A0S3RWS6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G252500 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-11
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 4   QHISSIPLETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEISWGL 63
           Q +   P E + SS  I E M  +   K+  +D+D  + W SK M +S++E+ +++ WG 
Sbjct: 236 QQLLKKPGEEEISSTYIYERMTCESGYKKV-SDEDHLVMWSSKAMIKSVDEVCRDVDWGE 295

Query: 64  KHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLRF 122
           K E+ +IG+ALQ +I KDLI+E++ D+      +Y+           PFEACRRRL F
Sbjct: 296 KRELGRIGLALQDYICKDLIEEIVRDL----GCFYTL----------PFEACRRRLCF 338

[Close]

BLAST of Cla012162 vs. NCBI nr
Match: gi|778694591|ref|XP_011653835.1| (PREDICTED: uncharacterized protein LOC101223146 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 3.9e-41
Identity = 98/122 (80.33%), Postives = 102/122 (83.61%), Query Frame = 1


Query: 1   MKLQHISSIP-LETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEI 60
           MKLQ +SSI  LE KASSRIIME +  KKKKKQQE D+DQPLTWRSK MGESLEEISKEI
Sbjct: 292 MKLQQMSSIDHLEAKASSRIIME-INMKKKKKQQEKDEDQPLTWRSKAMGESLEEISKEI 351

Query: 61  SWGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRL 120
           SWGLKHEMAKIGMALQHHIY DLIDEML DIM FSS  +SSF     SS PPFEACRRRL
Sbjct: 352 SWGLKHEMAKIGMALQHHIYGDLIDEMLTDIMHFSST-FSSF---HSSSIPPFEACRRRL 408

Query: 121 RF 122
           RF
Sbjct: 412 RF 408

[Close]

BLAST of Cla012162 vs. NCBI nr
Match: gi|595812632|ref|XP_007203441.1| (hypothetical protein PRUPE_ppa021795mg [Prunus persica])

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-12
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 40  PLTWRSKTMGESLEEISKEISWGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYS 99
           PL W S  M ES+EE+ ++I+WG + E+ +IG+ALQ HIYKDLI EM+ + M +S  Y  
Sbjct: 286 PLIWNSNAMRESVEEVCRDIAWGERREIGRIGLALQDHIYKDLIQEMVTE-MGYSYVY-- 345

Query: 100 SFLIPFDSSNPPFEACRRRLRF 122
                    + PFEAC+RRLRF
Sbjct: 346 ---------SLPFEACKRRLRF 355

[Close]

BLAST of Cla012162 vs. NCBI nr
Match: gi|1012191578|ref|XP_015970763.1| (PREDICTED: uncharacterized protein LOC107494225 [Arachis duranensis])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1


Query: 2   KLQHISSIPLETKASSRIIMENMKKKK-KKKQQENDDDQPLTWRSKTMGESLEEISKEIS 61
           K Q +   P E + SS  I E M  +   KK  E++D   + W SK M +S+EE+ ++I+
Sbjct: 246 KQQQLLKKPGEEEISSTYIYERMTSELVHKKVIEDEDHHSVMWSSKAMIKSVEEVCRDIA 305

Query: 62  WGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLR 121
           WG K E+ +IG+ALQ HI KDLI+E++ ++      +Y+           PF+AC+RRL 
Sbjct: 306 WGEKRELGRIGLALQDHICKDLIEEVVREL----GCFYTL----------PFQACKRRLC 352

[Close]

BLAST of Cla012162 vs. NCBI nr
Match: gi|1021529802|ref|XP_016161868.1| (PREDICTED: uncharacterized protein LOC107604727 [Arachis ipaensis])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1


Query: 2   KLQHISSIPLETKASSRIIMENMKKKK-KKKQQENDDDQPLTWRSKTMGESLEEISKEIS 61
           K Q +   P E + SS  I E M  +   KK  E++D   + W SK M +S+EE+ ++I+
Sbjct: 246 KQQQLLKKPGEEEISSTYIYERMTSELVHKKVIEDEDHHSVMWSSKAMIKSVEEVCRDIA 305

Query: 62  WGLKHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLR 121
           WG K E+ +IG+ALQ HI KDLI+E++ ++      +Y+           PF+AC+RRL 
Sbjct: 306 WGEKRELGRIGLALQDHICKDLIEEVVREL----GCFYTL----------PFQACKRRLC 352

[Close]

BLAST of Cla012162 vs. NCBI nr
Match: gi|920695438|gb|KOM38663.1| (hypothetical protein LR48_Vigan03g204500 [Vigna angularis])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 4   QHISSIPLETKASSRIIMENMKKKKKKKQQENDDDQPLTWRSKTMGESLEEISKEISWGL 63
           Q +   P E + SS  I E M  +   K+  +D+D  + W SK M +S++E+ +++ WG 
Sbjct: 236 QQLLKKPGEEEISSTYIYERMTCESGYKKV-SDEDHLVMWSSKAMIKSVDEVCRDVDWGE 295

Query: 64  KHEMAKIGMALQHHIYKDLIDEMLIDIMPFSSAYYSSFLIPFDSSNPPFEACRRRLRF 122
           K E+ +IG+ALQ +I KDLI+E++ D+      +Y+           PFEACRRRL F
Sbjct: 296 KRELGRIGLALQDYICKDLIEEIVRDL----GCFYTL----------PFEACRRRLCF 338

The following BLAST results are available for this feature:

BLAST of Cla012162 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3D7_CUCSA	2.7e-41	80.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416180 PE=4 SV=1	[more]
M5WCZ7_PRUPE	3.5e-12	48.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021795mg PE=4 SV=1	[more]
V7CUM7_PHAVU	8.6e-11	37.29	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G101500g PE=4 SV=1	[more]
A0A0L9U784_PHAAN	8.6e-11	37.29	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g204500 PE=4 SV=1	[more]
A0A0S3RWS6_PHAAN	8.6e-11	37.29	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G252500 PE=...	[more]

BLAST of Cla012162 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694591\|ref\|XP_011653835.1\|	3.9e-41	80.33	PREDICTED: uncharacterized protein LOC101223146 [Cucumis sativus]	[more]
gi\|595812632\|ref\|XP_007203441.1\|	5.0e-12	48.78	hypothetical protein PRUPE_ppa021795mg [Prunus persica]	[more]
gi\|1012191578\|ref\|XP_015970763.1\|	1.1e-11	38.02	PREDICTED: uncharacterized protein LOC107494225 [Arachis duranensis]	[more]
gi\|1021529802\|ref\|XP_016161868.1\|	1.1e-11	38.02	PREDICTED: uncharacterized protein LOC107604727 [Arachis ipaensis]	[more]
gi\|920695438\|gb\|KOM38663.1\|	1.2e-10	37.29	hypothetical protein LR48_Vigan03g204500 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012162	Cla012162.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37234	FAMILY NOT NAMED	coord: 43..121 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012162	Cla97C04G071570	Watermelon (97103) v2	wmwmbB291
Cla012162	MELO3C019169	Melon (DHL92) v3.5.1	mewmB591
Cla012162	ClCG04G005020	Watermelon (Charleston Gray)	wcgwmB255
Cla012162	CSPI04G18600	Wild cucumber (PI 183967)	cpiwmB343
Cla012162	Cucsa.022110	Cucumber (Gy14) v1	cgywmB589
Cla012162	CmaCh07G011210	Cucurbita maxima (Rimu)	cmawmB837
Cla012162	CmoCh07G011710	Cucurbita moschata (Rifu)	cmowmB828
Cla012162	Lsi01G017320	Bottle gourd (USVL1VR-Ls)	lsiwmB147
Cla012162	Cp4.1LG19g02300	Cucurbita pepo (Zucchini)	cpewmB487
Cla012162	MELO3C019169.2	Melon (DHL92) v3.6.1	medwmB577
Cla012162	Carg13334	Silver-seed gourd	carwmB0581
Cla012162	CsaV3_4G028970	Cucumber (Chinese Long) v3	cucwmB352
Cla012162	Bhi03G002100	Wax gourd	wgowmB453

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012162	Wax gourd	wgowmB439
Cla012162	Cucurbita maxima (Rimu)	cmawmB642
Cla012162	Cucurbita moschata (Rifu)	cmowmB635
Cla012162	Cucurbita pepo (Zucchini)	cpewmB081
Cla012162	Silver-seed gourd	carwmB1033