Cla012126 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012126
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 15831640 .. 15831813 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGTTTCCCTTTTAGTCTATTTTCTTGTCCTTTGCTCTTTAGGGTTTGTGTCTTCAACAACTCTTTCCAGATCTTCATTTTGCCCTAAAGAATCAGATTTCTTTCTCTATGGCGTTCGATCTCAATGCCCTTTCTCTGCGGTTCCCAGCTCGCCTTTACAGGTATGA

mRNA sequence

ATGGCTGCTGTTTCCCTTTTAGTCTATTTTCTTGTCCTTTGCTCTTTAGGGTTTGTGTCTTCAACAACTCTTTCCAGATCTTCATTTTGCCCTAAAGAATCAGATTTCTTTCTCTATGGCGTTCGATCTCAATGCCCTTTCTCTGCGGTTCCCAGCTCGCCTTTACAGGTATGA

Coding sequence (CDS)

ATGGCTGCTGTTTCCCTTTTAGTCTATTTTCTTGTCCTTTGCTCTTTAGGGTTTGTGTCTTCAACAACTCTTTCCAGATCTTCATTTTGCCCTAAAGAATCAGATTTCTTTCTCTATGGCGTTCGATCTCAATGCCCTTTCTCTGCGGTTCCCAGCTCGCCTTTACAGGTATGA

Protein sequence

MAAVSLLVYFLVLCSLGFVSSTTLSRSSFCPKESDFFLYGVRSQCPFSAVPSSPLQV

Homology

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BLAST of Cla012126 vs. TrEMBL
Match: A0A0A0KWM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192050 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.9e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MAAVSLLVYFLVLCSLGFVSSTTLSRSSFCPKESDFFLYGVRSQCPFSAVPSSPLQV 58
          MAA +L VYFL LC  GFVSS++LSRSS CPKESDFFLYGVRSQCPFSAVPSSPLQV
Sbjct: 1  MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 57

[Close]

BLAST of Cla012126 vs. NCBI nr
Match: gi|659082703|ref|XP_008441988.1| (PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MAAVSLLVYFLVLCSLGFVSSTTLSRSSFCPKESDFFLYGVRSQCPFSAVPSSPLQV 58
          MAA SL VYFL +CSLGFVSST+LSRSS CPKESDFFLYGVRSQCPFSAVPSSPLQV
Sbjct: 1  MAAFSLFVYFLAICSLGFVSSTSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 57

[Close]

BLAST of Cla012126 vs. NCBI nr
Match: gi|449459608|ref|XP_004147538.1| (PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MAAVSLLVYFLVLCSLGFVSSTTLSRSSFCPKESDFFLYGVRSQCPFSAVPSSPLQV 58
          MAA +L VYFL LC  GFVSS++LSRSS CPKESDFFLYGVRSQCPFSAVPSSPLQV
Sbjct: 1  MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 57

[Close]

BLAST of Cla012126 vs. NCBI nr
Match: gi|700198775|gb|KGN53933.1| (hypothetical protein Csa_4G192050 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MAAVSLLVYFLVLCSLGFVSSTTLSRSSFCPKESDFFLYGVRSQCPFSAVPSSPLQV 58
          MAA +L VYFL LC  GFVSS++LSRSS CPKESDFFLYGVRSQCPFSAVPSSPLQV
Sbjct: 1  MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 57

The following BLAST results are available for this feature:

BLAST of Cla012126 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWM7_CUCSA	6.9e-19	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192050 PE=4 SV=1	[more]

BLAST of Cla012126 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082703\|ref\|XP_008441988.1\|	2.3e-20	89.47	PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis melo]	[more]
gi\|449459608\|ref\|XP_004147538.1\|	9.9e-19	84.21	PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis sativus]	[more]
gi\|700198775\|gb\|KGN53933.1\|	9.9e-19	84.21	hypothetical protein Csa_4G192050 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012126	Cla012126.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012126	Lsi01G016720	Bottle gourd (USVL1VR-Ls)	lsiwmB145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012126	Cucurbita pepo (Zucchini)	cpewmB079
Cla012126	Cucurbita pepo (Zucchini)	cpewmB486
Cla012126	Cucumber (Gy14) v2	cgybwmB315
Cla012126	Melon (DHL92) v3.6.1	medwmB573
Cla012126	Silver-seed gourd	carwmB0276
Cla012126	Silver-seed gourd	carwmB0625
Cla012126	Cucumber (Chinese Long) v3	cucwmB356
Cla012126	Watermelon (97103) v2	wmwmbB291
Cla012126	Wax gourd	wgowmB439
Cla012126	Cucurbita maxima (Rimu)	cmawmB640
Cla012126	Cucurbita maxima (Rimu)	cmawmB836
Cla012126	Cucurbita moschata (Rifu)	cmowmB633
Cla012126	Cucurbita moschata (Rifu)	cmowmB826
Cla012126	Melon (DHL92) v3.5.1	mewmB585
Cla012126	Watermelon (Charleston Gray)	wcgwmB255
Cla012126	Cucumber (Chinese Long) v2	cuwmB339