Cla012106 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012106
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 16184573 .. 16184809 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTTCGCCATCTTCTTCTTAAAGCTCCTCCTTATCTTCCCCTTCGCCTCATGGCTTCCTCATCCTCCCTTTTCCCTTCCTCTATACACCTCCGCTCCCTTACTTCCTCCGCCTCTCTCGCTCCTCCCTTCAGTTTCCTTCAGTTCAGGTTCTACCACTTTTACTCTGCTTCTCCTTGGAAATTATACAGGAAATATCCAGAATGTGTTTATTTACGTTTCCTCTTGCTGTGA

mRNA sequence

ATGGCGCTTCGCCATCTTCTTCTTAAAGCTCCTCCTTATCTTCCCCTTCGCCTCATGGCTTCCTCATCCTCCCTTTTCCCTTCCTCTATACACCTCCGCTCCCTTACTTCCTCCGCCTCTCTCGCTCCTCCCTTCAGTTTCCTTCAGTTCAGGTTCTACCACTTTTACTCTGCTTCTCCTTGGAAATTATACAGGAAATATCCAGAATGTGTTTATTTACGTTTCCTCTTGCTGTGA

Coding sequence (CDS)

ATGGCGCTTCGCCATCTTCTTCTTAAAGCTCCTCCTTATCTTCCCCTTCGCCTCATGGCTTCCTCATCCTCCCTTTTCCCTTCCTCTATACACCTCCGCTCCCTTACTTCCTCCGCCTCTCTCGCTCCTCCCTTCAGTTTCCTTCAGTTCAGGTTCTACCACTTTTACTCTGCTTCTCCTTGGAAATTATACAGGAAATATCCAGAATGTGTTTATTTACGTTTCCTCTTGCTGTGA

Protein sequence

MALRHLLLKAPPYLPLRLMASSSSLFPSSIHLRSLTSSASLAPPFSFLQFRFYHFYSASPWKLYRKYPECVYLRFLLL

Homology

[Close]

BLAST of Cla012106 vs. TrEMBL
Match: A0A0A0L272_CUCSA (DNA gyrase subunit B OS=Cucumis sativus GN=Csa_4G430890 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-13
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MALRHLLLKAPPYLPLRLMASSSSLFPSSIHLRSLTSSASLAPPFSFLQFRFYHF 56
          MALR LLL+APPYLPLR MASS+S FPSSIHLR L+SSAS AP FSFLQ R   F
Sbjct: 1  MALRQLLLRAPPYLPLRFMASSTSFFPSSIHLRFLSSSASFAPRFSFLQLRGARF 55

[Close]

BLAST of Cla012106 vs. NCBI nr
Match: gi|659111368|ref|XP_008455715.1| (PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 1  MALRHLLLKAPPYLPLRLMASSSSLFPSSIHLRSLTSSASLAPPFSFLQFR 52
          M LR LLL+APPYLPLRLMASS+SLFPSSIHLR L+SSAS+AP FSFLQ R
Sbjct: 1  MTLRQLLLRAPPYLPLRLMASSTSLFPSSIHLRFLSSSASIAPRFSFLQLR 51

[Close]

BLAST of Cla012106 vs. NCBI nr
Match: gi|778694728|ref|XP_004144333.2| (PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-13
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MALRHLLLKAPPYLPLRLMASSSSLFPSSIHLRSLTSSASLAPPFSFLQFRFYHF 56
          MALR LLL+APPYLPLR MASS+S FPSSIHLR L+SSAS AP FSFLQ R   F
Sbjct: 1  MALRQLLLRAPPYLPLRFMASSTSFFPSSIHLRFLSSSASFAPRFSFLQLRGARF 55

[Close]

BLAST of Cla012106 vs. NCBI nr
Match: gi|659111370|ref|XP_008455716.1| (PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-13
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MALRHLLLKAPPYLPLRLMASSSSLFPSSIHLRSLTSSASLAPPFSFLQ 50
          M LR LLL+APPYLPLRLMASS+SLFPSSIHLR L+SSAS+AP FSFLQ
Sbjct: 1  MTLRQLLLRAPPYLPLRLMASSTSLFPSSIHLRFLSSSASIAPRFSFLQ 49

The following BLAST results are available for this feature:

BLAST of Cla012106 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L272_CUCSA	4.5e-13	76.36	DNA gyrase subunit B OS=Cucumis sativus GN=Csa_4G430890 PE=3 SV=1	[more]

BLAST of Cla012106 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111368\|ref\|XP_008455715.1\|	1.7e-13	82.35	PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like isoform X1 [Cu...	[more]
gi\|778694728\|ref\|XP_004144333.2\|	6.5e-13	76.36	PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial [Cucumis sativus]	[more]
gi\|659111370\|ref\|XP_008455716.1\|	6.5e-13	83.67	PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like isoform X2 [Cu...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
cellular_component	GO:0005694	chromosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012106	Cla012106.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012106	ClCG04G005580	Watermelon (Charleston Gray)	wcgwmB255
Cla012106	CsaV3_4G029550	Cucumber (Chinese Long) v3	cucwmB358

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012106	Silver-seed gourd	carwmB0207
Cla012106	Silver-seed gourd	carwmB0577
Cla012106	Cucumber (Chinese Long) v3	cucwmB356
Cla012106	Watermelon (97103) v2	wmwmbB291
Cla012106	Wax gourd	wgowmB440
Cla012106	Cucumber (Gy14) v1	cgywmB067
Cla012106	Cucurbita maxima (Rimu)	cmawmB634
Cla012106	Cucurbita moschata (Rifu)	cmowmB636
Cla012106	Cucurbita moschata (Rifu)	cmowmB818
Cla012106	Melon (DHL92) v3.5.1	mewmB577
Cla012106	Cucumber (Chinese Long) v2	cuwmB340
Cla012106	Cucurbita pepo (Zucchini)	cpewmB082
Cla012106	Cucurbita pepo (Zucchini)	cpewmB492
Cla012106	Bottle gourd (USVL1VR-Ls)	lsiwmB154
Cla012106	Cucumber (Gy14) v2	cgybwmB315
Cla012106	Cucumber (Gy14) v2	cgybwmB317
Cla012106	Melon (DHL92) v3.6.1	medwmB566