Cla012079 (gene) Watermelon (97103) v1

Overview
NameCla012079
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMuDRA transposase-like (AHRD V1 ***- Q5GIT1_CUCME)
LocationChr4 : 16927793 .. 16928119 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGGAAGCAATTGTTTATTCGACATGGTGGGACATGGGATGACATCAAACAGAGTTACAAAGGAGGTGTTTTAAAAGACATCATTGTGTCAATCACATTGACATACCAAGAACTGAAAGACCGAGTATACGGAATAGCAAGGATCGATCCATCAGAATTTGACGTTGTAATGAGAGATCAGTATAGGTTGGACTCGTATGGACCTGCGATATGCATAACCAACGATAGCGACATTAGATTTCTGTTGGTAGAGGCAGATTGGAATAGACCTCAGATTTTTGTCAGTATTGAGAAAAACAATCAGACAGATTATCAGGCATAA

mRNA sequence

ATGGATGGGAAGCAATTGTTTATTCGACATGGTGGGACATGGGATGACATCAAACAGAGTTACAAAGGAGGTGTTTTAAAAGACATCATTGTGTCAATCACATTGACATACCAAGAACTGAAAGACCGAGTATACGGAATAGCAAGGATCGATCCATCAGAATTTGACGTTGTAATGAGAGATCAGTATAGGTTGGACTCGTATGGACCTGCGATATGCATAACCAACGATAGCGACATTAGATTTCTGTTGGTAGAGGCAGATTGGAATAGACCTCAGATTTTTGTCAGTATTGAGAAAAACAATCAGACAGATTATCAGGCATAA

Coding sequence (CDS)

ATGGATGGGAAGCAATTGTTTATTCGACATGGTGGGACATGGGATGACATCAAACAGAGTTACAAAGGAGGTGTTTTAAAAGACATCATTGTGTCAATCACATTGACATACCAAGAACTGAAAGACCGAGTATACGGAATAGCAAGGATCGATCCATCAGAATTTGACGTTGTAATGAGAGATCAGTATAGGTTGGACTCGTATGGACCTGCGATATGCATAACCAACGATAGCGACATTAGATTTCTGTTGGTAGAGGCAGATTGGAATAGACCTCAGATTTTTGTCAGTATTGAGAAAAACAATCAGACAGATTATCAGGCATAA

Protein sequence

MDGKQLFIRHGGTWDDIKQSYKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYRLDSYGPAICITNDSDIRFLLVEADWNRPQIFVSIEKNNQTDYQA
Homology
[Close]
BLAST of Cla012079 vs. TrEMBL
Match: Q5GIT1_CUCME (MuDRA transposase-like OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 31/97 (31.96%), Postives = 63/97 (64.95%), Query Frame = 1 

Query: 5   QLFIRHGGTWDDIKQSYKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYR 64
           ++ +RHGG WD+ ++ Y+GGVLK I+V   +T+++L+  +Y +A +DP++FD+ +R  Y 
Sbjct: 5   RILVRHGGEWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYE 64

Query: 65  L--DSYGPAICITNDSDIRFLLVEADWNRPQIFVSIE 100
           +  +   P   ++ND D++F ++  +     +++S E
Sbjct: 65  IKGEKEAPPFELSNDRDLKFYILSENPLEVPLYLSFE 101

[Close]
BLAST of Cla012079 vs. TrEMBL
Match: V4VDG2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031984mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-06
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 21 YKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYRLDSYGPAICITNDSDI 80
          Y GG  K IIVS  +TY+EL DR+YGI ++D +E+ + M+  Y+ +     + I +D D+
Sbjct: 24 YSGGQTKGIIVSDDITYKELVDRLYGIVKVDTNEYVITMKSLYKANIPTMPVEIVDDDDV 83

Query: 81 RFLLVE 87
          RF + E
Sbjct: 84 RFFIQE 89

[Close]
BLAST of Cla012079 vs. TrEMBL
Match: A0A067F0P3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0409893mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-06
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 21  YKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYRLDSYGPAICITNDSDI 80
           Y GG  K IIVS  +TY+EL DR+YGI ++D +E+ + M+  Y+ +     + I +D D+
Sbjct: 44  YSGGQTKGIIVSDDITYKELVDRLYGIVKVDTNEYVITMKSLYKANIPTMPVEIVDDDDV 103

Query: 81  RFLLVE 87
           RF + E
Sbjct: 104 RFFIQE 109

[Close]
BLAST of Cla012079 vs. NCBI nr
Match: gi|46398239|gb|AAS91797.1| (MuDRA-like transposase [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 31/97 (31.96%), Postives = 63/97 (64.95%), Query Frame = 1 

Query: 5   QLFIRHGGTWDDIKQSYKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYR 64
           ++ +RHGG WD+ ++ Y+GGVLK I+V   +T+++L+  +Y +A +DP++FD+ +R  Y 
Sbjct: 5   RILVRHGGEWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYE 64

Query: 65  L--DSYGPAICITNDSDIRFLLVEADWNRPQIFVSIE 100
           +  +   P   ++ND D++F ++  +     +++S E
Sbjct: 65  IKGEKEAPPFELSNDRDLKFYILSENPLEVPLYLSFE 101

[Close]
BLAST of Cla012079 vs. NCBI nr
Match: gi|694363105|ref|XP_009360896.1| (PREDICTED: uncharacterized protein LOC103951284 [Pyrus x bretschneideri])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = 1 

Query: 1   MDGKQLFIRHGGTWDDIKQSYKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMR 60
           M    + I++ G W  +   YKGG  K ++VS  LTY+EL+DR+YG+ ++DP+E+ ++M+
Sbjct: 1   MTNLTILIKYDGKW--VNSLYKGGKTKALVVSEKLTYEELRDRLYGLMKVDPNEYGIIMK 60

Query: 61  DQYRLDSYGPAICITNDSDIRFLLVEA---DWNRPQIFVSIEK 101
             Y   S+     + +D+D+   + E+   DW  P + +++E+
Sbjct: 61  AVYSGKSHPYPAEVVDDNDVAAFICESVARDWKIP-LCITLER 100

[Close]
BLAST of Cla012079 vs. NCBI nr
Match: gi|470112958|ref|XP_004292696.1| (PREDICTED: uncharacterized protein LOC101300219 [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.0 bits (149), Expect = 7.4e-07
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 5   QLFIRHGGTWDDIKQSYKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYR 64
           +L + + G W +    Y GG  K I+VS  +TYQEL+DRVY I  +DP E+ ++M+ +Y 
Sbjct: 334 RLLVNYNGMWTNA--GYIGGKTKGILVSEDITYQELEDRVYRIVGVDPREYKMIMKAKYE 393

Query: 65  LDSYGPAICITNDSDIRFLLVEA 88
                  + I +D D+ F ++E+
Sbjct: 394 SKDPTQPVEIIDDEDLGFFILES 414

[Close]
BLAST of Cla012079 vs. NCBI nr
Match: gi|567889354|ref|XP_006437199.1| (hypothetical protein CICLE_v10031984mg [Citrus clementina])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-06
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 21 YKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYRLDSYGPAICITNDSDI 80
          Y GG  K IIVS  +TY+EL DR+YGI ++D +E+ + M+  Y+ +     + I +D D+
Sbjct: 24 YSGGQTKGIIVSDDITYKELVDRLYGIVKVDTNEYVITMKSLYKANIPTMPVEIVDDDDV 83

Query: 81 RFLLVE 87
          RF + E
Sbjct: 84 RFFIQE 89

[Close]
BLAST of Cla012079 vs. NCBI nr
Match: gi|641842014|gb|KDO60923.1| (hypothetical protein CISIN_1g0409893mg, partial [Citrus sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-06
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 21  YKGGVLKDIIVSITLTYQELKDRVYGIARIDPSEFDVVMRDQYRLDSYGPAICITNDSDI 80
           Y GG  K IIVS  +TY+EL DR+YGI ++D +E+ + M+  Y+ +     + I +D D+
Sbjct: 44  YSGGQTKGIIVSDDITYKELVDRLYGIVKVDTNEYVITMKSLYKANIPTMPVEIVDDDDV 103

Query: 81  RFLLVE 87
           RF + E
Sbjct: 104 RFFIQE 109

The following BLAST results are available for this feature:
BLAST of Cla012079 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5GIT1_CUCME7.6e-1131.96MuDRA transposase-like OS=Cucumis melo PE=4 SV=1[more]
V4VDG2_9ROSI4.3e-0640.91Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031984mg PE=4 SV=1[more]
A0A067F0P3_CITSI4.3e-0640.91Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0409893mg PE=4 ... [more]
BLAST of Cla012079 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|46398239|gb|AAS91797.1|1.1e-1031.96MuDRA-like transposase [Cucumis melo][more]
gi|694363105|ref|XP_009360896.1|1.0e-0832.04PREDICTED: uncharacterized protein LOC103951284 [Pyrus x bretschneideri][more]
gi|470112958|ref|XP_004292696.1|7.4e-0736.14PREDICTED: uncharacterized protein LOC101300219 [Fragaria vesca subsp. vesca][more]
gi|567889354|ref|XP_006437199.1|6.2e-0640.91hypothetical protein CICLE_v10031984mg [Citrus clementina][more]
gi|641842014|gb|KDO60923.1|6.2e-0640.91hypothetical protein CISIN_1g0409893mg, partial [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012079Cla012079.1mRNA