Cla012067 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012067
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 17090407 .. 17090661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGACTTTCTTTGGGAATGGATGGATGAAGGGAAGGGTTCTCATCTGGTAAGTTGGGAGGTTGTTGGGTGCCTCCTGAATCAGGGAGTGTTGGAGATTGGAAATCTAAGGTTACACAACAAATCTTTGTCGGCTAAATGGCTTTGGCATTTTGCCCTTGAGTCTGAATCCTTGTGCTATAGGATCATTGTGAGTAAGCATGGCTCACATCCTTTTGATTGGGTGGTTAAAGGGGCTAAAGGCACACACTGA

mRNA sequence

ATGAGAGACTTTCTTTGGGAATGGATGGATGAAGGGAAGGGTTCTCATCTGGTAAGTTGGGAGGTTGTTGGGTGCCTCCTGAATCAGGGAGTGTTGGAGATTGGAAATCTAAGGTTACACAACAAATCTTTGTCGGCTAAATGGCTTTGGCATTTTGCCCTTGAGTCTGAATCCTTGTGCTATAGGATCATTGTGAGTAAGCATGGCTCACATCCTTTTGATTGGGTGGTTAAAGGGGCTAAAGGCACACACTGA

Coding sequence (CDS)

ATGAGAGACTTTCTTTGGGAATGGATGGATGAAGGGAAGGGTTCTCATCTGGTAAGTTGGGAGGTTGTTGGGTGCCTCCTGAATCAGGGAGTGTTGGAGATTGGAAATCTAAGGTTACACAACAAATCTTTGTCGGCTAAATGGCTTTGGCATTTTGCCCTTGAGTCTGAATCCTTGTGCTATAGGATCATTGTGAGTAAGCATGGCTCACATCCTTTTGATTGGGTGGTTAAAGGGGCTAAAGGCACACACTGA

Protein sequence

MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLCYRIIVSKHGSHPFDWVVKGAKGTH

Homology

[Close]

BLAST of Cla012067 vs. TrEMBL
Match: M5XV38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-13
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE+ SL 
Sbjct: 75  MRNFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLW 134

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 135 HRIIKSKYGIDSNGWDTK 152

[Close]

BLAST of Cla012067 vs. TrEMBL
Match: M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-13
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE+ SL 
Sbjct: 561 MRNFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLW 620

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 621 HRIIKSKYGIDSNGWDTK 638

[Close]

BLAST of Cla012067 vs. TrEMBL
Match: M5WPQ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-13
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1    MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
            MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE+ SL 
Sbjct: 1068 MRNFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLW 1127

Query: 61   YRIIVSKHGSHPFDWVVK 79
            +RII SK+G     W  K
Sbjct: 1128 HRIIKSKYGIDSNGWDTK 1145

[Close]

BLAST of Cla012067 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-13
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE  SL 
Sbjct: 812 MRNFLWEGLEEGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLW 871

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 872 HRIIKSKYGIDSNGWDTK 889

[Close]

BLAST of Cla012067 vs. TrEMBL
Match: M5WKV4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.3e-13
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE +++GK  HLV WE V     +G L IG+LR  N++L AKWLW F LE  SL 
Sbjct: 568 MRNFLWEGLEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLW 627

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 628 HRIIKSKYGIDSNGWDTK 645

[Close]

BLAST of Cla012067 vs. NCBI nr
Match: gi|596232261|ref|XP_007224309.1| (hypothetical protein PRUPE_ppa019854mg [Prunus persica])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE+ SL 
Sbjct: 75  MRNFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLW 134

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 135 HRIIKSKYGIDSNGWDTK 152

[Close]

BLAST of Cla012067 vs. NCBI nr
Match: gi|595809689|ref|XP_007202950.1| (hypothetical protein PRUPE_ppa016504mg, partial [Prunus persica])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE  SL 
Sbjct: 812 MRNFLWEGLEEGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLW 871

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 872 HRIIKSKYGIDSNGWDTK 889

[Close]

BLAST of Cla012067 vs. NCBI nr
Match: gi|595905097|ref|XP_007214027.1| (hypothetical protein PRUPE_ppa016677mg [Prunus persica])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1    MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
            MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE+ SL 
Sbjct: 1068 MRNFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLW 1127

Query: 61   YRIIVSKHGSHPFDWVVK 79
            +RII SK+G     W  K
Sbjct: 1128 HRIIKSKYGIDSNGWDTK 1145

[Close]

BLAST of Cla012067 vs. NCBI nr
Match: gi|595883970|ref|XP_007212886.1| (hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           MR+FLWE ++EGK  HLV WE V     +G L IG+LR  N++L AKWLW F LE+ SL 
Sbjct: 561 MRNFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLW 620

Query: 61  YRIIVSKHGSHPFDWVVK 79
           +RII SK+G     W  K
Sbjct: 621 HRIIKSKYGIDSNGWDTK 638

[Close]

BLAST of Cla012067 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-13
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 1   MRDFLWEWMDEGKGSHLVSWEVVGCLLNQGVLEIGNLRLHNKSLSAKWLWHFALESESLC 60
           M+ FLWE ++EGK +HLV WE+V     +G L +GNLR  N++L AKWLW F +ES+SL 
Sbjct: 167 MKGFLWEGVEEGKKTHLVKWELVTKNKEEGGLGVGNLRNQNEALLAKWLWRFPMESQSLW 226

Query: 61  YRIIVSKHGSHPFDW 76
           +++I SK+G     W
Sbjct: 227 HKVIRSKYGLQVNGW 241

The following BLAST results are available for this feature:

BLAST of Cla012067 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XV38_PRUPE	3.7e-13	52.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1	[more]
M5X4S0_PRUPE	3.7e-13	52.56	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 S...	[more]
M5WPQ5_PRUPE	3.7e-13	52.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1	[more]
M5VS59_PRUPE	3.7e-13	52.56	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S...	[more]
M5WKV4_PRUPE	8.3e-13	51.28	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 S...	[more]

BLAST of Cla012067 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|596232261\|ref\|XP_007224309.1\|	5.3e-13	52.56	hypothetical protein PRUPE_ppa019854mg [Prunus persica]	[more]
gi\|595809689\|ref\|XP_007202950.1\|	5.3e-13	52.56	hypothetical protein PRUPE_ppa016504mg, partial [Prunus persica]	[more]
gi\|595905097\|ref\|XP_007214027.1\|	5.3e-13	52.56	hypothetical protein PRUPE_ppa016677mg [Prunus persica]	[more]
gi\|595883970\|ref\|XP_007212886.1\|	5.3e-13	52.56	hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica]	[more]
gi\|657996200\|ref\|XP_008390463.1\|	7.0e-13	49.33	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012067	Cla012067.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012067	Cucurbita pepo (Zucchini)	cpewmB088
Cla012067	Cucurbita pepo (Zucchini)	cpewmB492
Cla012067	Bottle gourd (USVL1VR-Ls)	lsiwmB154
Cla012067	Cucumber (Gy14) v2	cgybwmB317
Cla012067	Melon (DHL92) v3.6.1	medwmB566
Cla012067	Silver-seed gourd	carwmB0577
Cla012067	Silver-seed gourd	carwmB0967
Cla012067	Cucumber (Chinese Long) v3	cucwmB358
Cla012067	Watermelon (97103) v2	wmwmbB291
Cla012067	Wax gourd	wgowmB440
Cla012067	Cucurbita maxima (Rimu)	cmawmB634
Cla012067	Cucurbita maxima (Rimu)	cmawmB829
Cla012067	Cucurbita moschata (Rifu)	cmowmB626
Cla012067	Cucurbita moschata (Rifu)	cmowmB818
Cla012067	Melon (DHL92) v3.5.1	mewmB577
Cla012067	Watermelon (Charleston Gray)	wcgwmB255
Cla012067	Cucumber (Chinese Long) v2	cuwmB340