Cla012041 (gene) Watermelon (97103) v1

Overview
NameCla012041
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 17527383 .. 17529948 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTACGGATTGGGAAAGTTCTTCAGGAGGAGCTAGTGGTGATGAAGGCAATTACGAACAAGACATAAACGACGAAGAAGAATGTCTCTACACATCTGGGTACTTGCGCAAGTTGCAATTTAGGTTGAGAATTTCAAGAATTTAAGCTCCTCCAAATCATTCAATAGGATGATGCTATTTTCTTATTATTAAGTATCTGTCCCCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACAACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGATTTTATTATGGTTTTGTTATCCCTATTGTTTTTTATATTGTCCGCAACATGTTTTGGGGAGTTCTCTAAATATTACTGTAATATCATTAAAAAGAAAAGAAATCGGAAGTGTTTCCAAGCCAAGGCCAGGAAATGGCCTATGAGGTGAGGAGAGCTGCATTAGGTGCATCTTGGCAATTACCTTGGTCGCCTCTTGATCATTTTTTTTAATTACTTTTTGGTTCTTTTGGGGGCTGTATTTAGAACATTACATTATGAATCAAGGGAAGGAATTACGACCTTACTTGAGTAGAATTTGTTTTATAAGTTGTATAACTGTGTCATTGCATTCTAAAGAATAAAGGGAAGGAATTCAAAGTTAATATTTACAAGAGGAAACACTAGTTGCCTTTTGTGTCTTAGTAAAGATACGAAGTCAAACATTGTTGAAGTACTTTTTTTTAACTCTAGTCTTTTTTCCTACCATTACCTCTTGAAAATAAGTAGCATCAATGAAGTTTTATTAATCTTGTTTGTGTCCAACTATAACTTCATTTTTTGTGTCACTTATTCTTCTTTTCTATTTACAATATATATGCACATTTTAATATTTTTATTGAATCTTTTAGGAAAGTTAGAAATGTGTTACCTTAAATTGTATCTTGTGATTTGTAAATGTTTGGTTATAATATGACCTTTTGACTCAAAAGTGGAGTGTTGCTTTTTAAGCTGAAGATATCCCCTTTTTTTAATAATTATTTTTACATAGATTAAGGATCGTAATCTCTTTCGAGATGTTCAGATGACAATGTTTATGCATGCTATCAAAATTTCATTTCTATATTTTCAGATTTCTTATTGAAGTTGGGGCCCTACGTCTTTTGGATGATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAAGTAGCTGAAGGAAAAAGTGGGTGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGAATAAAGTTCCTTGGTCTCTGAAGAATGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGTCAAATCAGAAGACGAGAGGTCGATTTCCGAACTATTAGATGCCATTCAGCTCGATGAAGTAACACCCATTTTTGATGTTTTTCTTCCACATAACAGATTTAGAAAGTCTTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTCGGTAACAACTTCCTCAATAAGATAGTGTGGAGTATCAGTTTTGTGTTCAAACTTTTGTCAGTGTGTCAAGTGCATGTTAGAGTGTAATTTTAAAATCATCCATGCTTCCTCTGGAAGAAAATTAGTTAAATGCTTCTGCTGTAGTAAGCACTCTATATACTTCAACATCTTAGTGCATGTTCGGGTGTGATTTTAAATTCATCAAAATTATTTTTGTCATGTTTAAAATCATCAAAAAAACACATTTTTAATCATTCACAATTAATTTAGTCTTCAATTTTATACTTTTACGCAATTTTCATATCATCAAAATTAGTTTTGAGGGATTAATAACATGTTTCATGGTGATTTTAAAAATGACCAAAGTGATTTAGCCATTTTAAAATATTCCCAAACATGCCCATTTCTAAATATATACTTTTTATTATTGAAACATTTTGAAAATGCATTTAGTTGGTCAAAGACACCTTTTACCACTCTTTAACATTTTAACCAGATCTTACCCATTTCTAAATTTATACTTTCAGTCATCCACAAGGACTTTAAAAGGCATGTTAAACACACTTTAGATTAGTACTCAATTCTATGGTTATGAAATTGTTTCTGCATTATATTGATTTAATTTTTTGCCTTGTGTAACTATGTGGTTGCATTCTTGTTATAACACCATTATCACCTTACTTGAACAGGATCTCTTCTATAGGTTGTACAAATGTGAACTTGCGTTCTAACTAATAATAAGCCTCAACTTGTGTCATTTCTTTCTTCTGGAAAATGCTATGCATTACTTAGAATCGTTCTGTTCCTTTAATTCCTGTGATGTAATTTTTTTCTTTTGTAGGGGATATCCACCTTCAAAAGAAGATATTGAAATTCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGAGTCTGCTTCTTTTCATTTGATAAGGTGGAACTCCCTATCTTACCTTAG

mRNA sequence

ATGGAGGCTACGGATTGGGAAAGTTCTTCAGGAGGAGCTAGTGGTGATGAAGGCAATTACGAACAAGACATAAACGACGAAGAAGAATGTCTCTACACATCTGGGTACTTGCGCAAGTTGCAATTTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACAACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCCCTACGTCTTTTGGATGATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAAGTAGCTGAAGGAAAAAGTGGGTGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGAATAAAGTTCCTTGGTCTCTGAAGAATGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGTCAAATCAGAAGACGAGAGGTCGATTTCCGAACTATTAGATGCCATTCAGCTCGATGAAGTAACACCCATTTTTGATGTTTTTCTTCCACATAACAGATTTAGAAAGTCTTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTCGGGGATATCCACCTTCAAAAGAAGATATTGAAATTCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGAGTCTGCTTCTTTTCATTTGATAAGGTGGAACTCCCTATCTTACCTTAG

Coding sequence (CDS)

ATGGAGGCTACGGATTGGGAAAGTTCTTCAGGAGGAGCTAGTGGTGATGAAGGCAATTACGAACAAGACATAAACGACGAAGAAGAATGTCTCTACACATCTGGGTACTTGCGCAAGTTGCAATTTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACAACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCCCTACGTCTTTTGGATGATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAAGTAGCTGAAGGAAAAAGTGGGTGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGAATAAAGTTCCTTGGTCTCTGAAGAATGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGTCAAATCAGAAGACGAGAGGTCGATTTCCGAACTATTAGATGCCATTCAGCTCGATGAAGTAACACCCATTTTTGATGTTTTTCTTCCACATAACAGATTTAGAAAGTCTTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTCGGGGATATCCACCTTCAAAAGAAGATATTGAAATTCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGAGTCTGCTTCTTTTCATTTGATAAGGTGGAACTCCCTATCTTACCTTAG

Protein sequence

MEATDWESSSGGASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSEDERSISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRGIPMKYCHVEHGRVCFFSFDKVELPILP
Homology
[Close]
BLAST of Cla012041 vs. Swiss-Prot
Match: SEN54_SCHPO (Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen54 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.0e-06
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 1 

Query: 37  LRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTTGIVRC-GKIYCSIEETLFLIEVGAL 96
           + +L   KHA  A WN Q GM+ V +  G L+ T G      +++   EETL+L+E G++
Sbjct: 74  VERLISAKHAIIATWNAQNGMSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGSM 133

Query: 97  RLLDDDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRHLKSLGF-IVGKNKVP 146
               ++   +SL+ VY   +    G L E + VY HL+  GF ++  N VP
Sbjct: 134 ECWSEEGLPMSLQAVY-SASIPLCGSL-ENYLVYAHLRRCGFSVIRSNLVP 182

[Close]
BLAST of Cla012041 vs. TrEMBL
Match: A0A0A0KXV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 3.8e-136
Identity = 240/267 (89.89%), Postives = 253/267 (94.76%), Query Frame = 1 

Query: 1   MEATDWESSSGGA--SGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT+WESSSGGA  +GDE NYEQDINDEEECL  SG LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGAL LLD DNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 SGCLWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSEDERS 180
           SG LWEQFEVYRHLKSLG+IVGK++VPWSLKNVRN  DISSPSS ENKGASDVKS+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 ISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRG 240
           I  LL+AIQLDEVTPIFDVFLPHN+FRKSSPGDPNFMVCLTRGYPPSKE+IE+LERTSRG
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPILP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of Cla012041 vs. TrEMBL
Match: A0A059D747_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.8e-77
Identity = 150/267 (56.18%), Postives = 198/267 (74.16%), Query Frame = 1 

Query: 1   MEATDWESSSGGASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEV 60
           ME  DW+    G S D    EQD+ DEEE  YTS    KLQFRK  S ARWN ++ MAEV
Sbjct: 1   MECEDWD----GLSSDSELLEQDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSRVRMAEV 60

Query: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSG 120
           +E KG LWTTTGIVR GK+YCSIEETLFL+E+GAL LL +++ S+SL+ +Y+++AE K G
Sbjct: 61  VERKGQLWTTTGIVRSGKLYCSIEETLFLMEIGALLLLSENDESISLETMYQQLAEEKDG 120

Query: 121 CLWEQFEVYRHLKSLGFIVGKNKVPWSLKNV-RNGSDISSPSSIENKGASDVKS-EDERS 180
           C WE +EVYRHLKSLG+IVG++ +PWS+K+V RN   +SS  + E   + +V+S +D  S
Sbjct: 121 CFWELYEVYRHLKSLGYIVGRHGIPWSMKSVKRNTGTVSSEGTSE---SLEVQSPQDCNS 180

Query: 181 ISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRG 240
           + E L  + L+E+  +FDV+LP+ +FRKSSPGDP++++ L RG PPSK +IE +ER   G
Sbjct: 181 VIERLIKMDLNELKLVFDVYLPNGKFRKSSPGDPSYILSLIRGQPPSKIEIEAIERQCGG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPILP 266
           IP+K+C VEHGRV F+SF KVELP+LP
Sbjct: 241 IPLKFCLVEHGRVSFYSFSKVELPVLP 260

[Close]
BLAST of Cla012041 vs. TrEMBL
Match: D7THT2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08930 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.8e-77
Identity = 147/254 (57.87%), Postives = 186/254 (73.23%), Query Frame = 1 

Query: 12  GASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTT 71
           GAS  E  Y QD NDEEE  YTS  + KLQFRK  S A WND M MAEV+E KG +WTTT
Sbjct: 30  GASDSE-IYLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGKMWTTT 89

Query: 72  GIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRH 131
           G++  GKIYCSIEETLFL E+GAL LLDD++  +SLK +Y KV++GK GC WE FE YRH
Sbjct: 90  GMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESFEAYRH 149

Query: 132 LKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSEDERSISELLDAIQLDEV 191
           LKSLG+IVG++ +PW+ K  +   D S   + E    +D  SE+E S  EL++ + + EV
Sbjct: 150 LKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNMHITEV 209

Query: 192 TPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRGIPMKYCHVEHGRV 251
             +FDV+LP+++FRKSSPGDP+F++CLTRG+PP K +IE LER    IP K+ HV HGRV
Sbjct: 210 KLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHVSHGRV 269

Query: 252 CFFSFDKVELPILP 266
            FFSF++VELP+LP
Sbjct: 270 SFFSFNRVELPVLP 281

[Close]
BLAST of Cla012041 vs. TrEMBL
Match: V4S2K6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005938mg PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.6e-76
Identity = 149/272 (54.78%), Postives = 198/272 (72.79%), Query Frame = 1 

Query: 2   EATDWESSSGGASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEVL 61
           +   WE     AS +E +Y  +I++E+   Y SG++ KLQFRK  S A WN+++GMAEV+
Sbjct: 5   DCDSWEK----ASDNEDSYVDEIDEED--YYMSGFISKLQFRKDISKAHWNNELGMAEVV 64

Query: 62  ENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSGC 121
           E KG +WTTTGIVR GK YCSIEETLFL E+GAL LLD+++  L LK++Y+K+A  KSGC
Sbjct: 65  EKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGC 124

Query: 122 LWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDI---SSPSSIE----NKGASDVKSE 181
            WE FEVYRHLKSLG+IVG++ VPW +K +  G DI   S P S++      G  +V+ +
Sbjct: 125 SWELFEVYRHLKSLGYIVGRHGVPWIVK-IPKGRDINITSDPVSLQVTPKRHGVMEVEPK 184

Query: 182 DERSISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLT-RGYPPSKEDIEILE 241
           +E S+  L D IQ++EV P+FDV+LP+ +F+KS PGDP+F++ LT +  PPSK +IE+LE
Sbjct: 185 EESSLVALFDNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKVCPPSKAEIEVLE 244

Query: 242 RTSRGIPMKYCHVEHGRVCFFSFDKVELPILP 266
           R    IP+K+CHVE GRV FFSFD VELPILP
Sbjct: 245 RQCGSIPLKFCHVEQGRVSFFSFDSVELPILP 269

[Close]
BLAST of Cla012041 vs. TrEMBL
Match: A0A059DI98_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02322 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.2e-75
Identity = 147/267 (55.06%), Postives = 193/267 (72.28%), Query Frame = 1 

Query: 1   MEATDWESSSGGASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEV 60
           ME  DW     G S D    E+D+ DEEE  YTS    KLQFRK  S ARWN  +GMAEV
Sbjct: 1   MECEDWH----GLSSDSELLEEDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSGVGMAEV 60

Query: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSG 120
           +E KG LW TTGIV  GK+YCSIEETLFL+E+GAL LL +++ S+SL+ +Y+++AE K G
Sbjct: 61  VERKGQLWMTTGIVHSGKLYCSIEETLFLMEIGALLLLSENDESISLETMYQQLAEEKDG 120

Query: 121 CLWEQFEVYRHLKSLGFIVGKNKVPWSLKNV-RNGSDISSPSSIENKGASDVKS-EDERS 180
           C WE +EVYRHLKSLG+IVG++ +PWSLK+V +N   +SS  + E   + +V+S +D  S
Sbjct: 121 CFWELYEVYRHLKSLGYIVGRHGIPWSLKSVKKNTGTVSSEGTSE---SLEVQSPQDCNS 180

Query: 181 ISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRG 240
           + E    + L+E+  +FDV+LP+ +FRKSSPGDP++++ L RG PPSK +IE  ER   G
Sbjct: 181 VIERFIKMDLNELKLVFDVYLPNGKFRKSSPGDPSYVLSLIRGQPPSKIEIEAFERQCGG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPILP 266
           IP+K+C VEHGRV F+SF KVELP+LP
Sbjct: 241 IPLKFCLVEHGRVSFYSFSKVELPVLP 260

[Close]
BLAST of Cla012041 vs. NCBI nr
Match: gi|778694019|ref|XP_011653726.1| (PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus])

HSP 1 Score: 492.3 bits (1266), Expect = 5.4e-136
Identity = 240/267 (89.89%), Postives = 253/267 (94.76%), Query Frame = 1 

Query: 1   MEATDWESSSGGA--SGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT+WESSSGGA  +GDE NYEQDINDEEECL  SG LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGAL LLD DNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 SGCLWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSEDERS 180
           SG LWEQFEVYRHLKSLG+IVGK++VPWSLKNVRN  DISSPSS ENKGASDVKS+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 ISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRG 240
           I  LL+AIQLDEVTPIFDVFLPHN+FRKSSPGDPNFMVCLTRGYPPSKE+IE+LERTSRG
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPILP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of Cla012041 vs. NCBI nr
Match: gi|659126611|ref|XP_008463274.1| (PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo])

HSP 1 Score: 483.8 bits (1244), Expect = 1.9e-133
Identity = 234/267 (87.64%), Postives = 250/267 (93.63%), Query Frame = 1 

Query: 1   MEATDWESSSGGA--SGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT+W+SSSGGA  +GDE NYEQDINDEEECL  S  LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTTTGIVRCGKIYC+IEETLFLIEVGAL LLD DNS+LSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCTIEETLFLIEVGALHLLDHDNSTLSLKDVYKKVAEGR 120

Query: 121 SGCLWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSEDERS 180
           SGC+WEQFEVYRHLKSLG+IVGK+KVPWSLKNVRN  D+SSPSS E KG SDVKSEDE+ 
Sbjct: 121 SGCIWEQFEVYRHLKSLGYIVGKHKVPWSLKNVRNDCDLSSPSSTEKKGVSDVKSEDEQL 180

Query: 181 ISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRG 240
           IS LL+AIQLDEVTPIFDVFLPHN+FRKSSPGDPNFMVCL RGYPPSKE+IE+LERTSRG
Sbjct: 181 ISGLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLARGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPILP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of Cla012041 vs. NCBI nr
Match: gi|1009154062|ref|XP_015894967.1| (PREDICTED: uncharacterized protein LOC107428885 [Ziziphus jujuba])

HSP 1 Score: 302.4 bits (773), Expect = 7.9e-79
Identity = 148/266 (55.64%), Postives = 196/266 (73.68%), Query Frame = 1 

Query: 1   MEATDWESSSGGASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEV 60
           ME    ESS G  S D+ + +   +D+ E  Y SG + KLQ R   S ARWN +M MAEV
Sbjct: 1   MEVVKCESSFGEDSDDDSHGQYANDDDAEYSYASGLVPKLQSRNIVSKARWNSKMEMAEV 60

Query: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSG 120
           +  KGSLW TTGI R G IYCSIEE LFL E+GAL LLD  +++L L+D+Y KVA GK+G
Sbjct: 61  IVQKGSLWKTTGIARRGMIYCSIEEVLFLAELGALILLDHCDATLPLEDIYVKVANGKNG 120

Query: 121 CLWEQFEVYRHLKSLGFIVGKNKVPWSLKNV-RNGSDISSPSSIENKGASDVKSEDERSI 180
           C WEQF+ Y+ LKSLG+IVG++ VPWSLK V R+   +SS  S+E+   +D +SED+ SI
Sbjct: 121 CSWEQFQAYKQLKSLGYIVGRHGVPWSLKGVNRSNECVSSKCSVES-ALADSESEDKSSI 180

Query: 181 SELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRGI 240
             + + +Q++E  P+FDV+LP+++FRKSSPGDP+F++C T GYPPSK ++E LER   G+
Sbjct: 181 IGMFNGMQINEARPVFDVYLPNSKFRKSSPGDPSFVLCFTGGYPPSKAELEALERECGGV 240

Query: 241 PMKYCHVEHGRVCFFSFDKVELPILP 266
           P+K+CH+EHGRV FFSFD+VELP+LP
Sbjct: 241 PLKFCHIEHGRVNFFSFDRVELPVLP 265

[Close]
BLAST of Cla012041 vs. NCBI nr
Match: gi|720076187|ref|XP_010279548.1| (PREDICTED: uncharacterized protein LOC104613432 [Nelumbo nucifera])

HSP 1 Score: 298.9 bits (764), Expect = 8.8e-78
Identity = 151/265 (56.98%), Postives = 195/265 (73.58%), Query Frame = 1 

Query: 1   MEATDWESSSGGASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQMGMAEV 60
           ME  D  SSS G S  E   E D+NDEE   YTSG + KLQFRK  S ARWN +MGMAEV
Sbjct: 1   MEIEDLASSSDGMSDLEVPSE-DLNDEE-LQYTSGSIPKLQFRKDTSKARWNAEMGMAEV 60

Query: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKVAEGKSG 120
           +E KG +W TTGIVR GK+YC+IEETLFL E+GAL LLD D+++L LKD+Y+KVAEG+SG
Sbjct: 61  IEKKGKMWITTGIVRRGKLYCTIEETLFLAEIGALHLLDVDDTTLFLKDLYEKVAEGRSG 120

Query: 121 CLWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSEDERSIS 180
           C WE FEVYRHLKSLG+IVG+  VPW++K   NG + +   + E    SD +  +  S  
Sbjct: 121 CCWETFEVYRHLKSLGYIVGRYGVPWTMKG-DNGCNSTLQGTAETSTVSDSELVNRFSFI 180

Query: 181 ELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILERTSRGIP 240
              + +Q+ ++ P F+V+LP+N+FRKSSPGDP+FM+ +TR +PPS+ +IE LER   GIP
Sbjct: 181 NQRENLQISDLRPDFEVYLPNNKFRKSSPGDPSFMLFVTRAHPPSRNEIEELERKCNGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPILP 266
           +K+ HV+HGRV FFS ++VELP+LP
Sbjct: 241 LKFSHVDHGRVSFFSINRVELPVLP 262

[Close]
BLAST of Cla012041 vs. NCBI nr
Match: gi|731399816|ref|XP_010653757.1| (PREDICTED: uncharacterized protein LOC100257347 isoform X2 [Vitis vinifera])

HSP 1 Score: 298.1 bits (762), Expect = 1.5e-77
Identity = 148/271 (54.61%), Postives = 190/271 (70.11%), Query Frame = 1 

Query: 1   MEATDWESSSGG------ASGDEGNYEQDINDEEECLYTSGYLRKLQFRKHASTARWNDQ 60
           M+ T   + SG        + D   Y QD NDEEE  YTS  + KLQFRK  S A WND 
Sbjct: 1   MQQTQLSAKSGAIDIMEDGASDSEIYLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDA 60

Query: 61  MGMAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALRLLDDDNSSLSLKDVYKKV 120
           M MAEV+E KG +WTTTG++  GKIYCSIEETLFL E+GAL LLDD++  +SLK +Y KV
Sbjct: 61  MRMAEVVEMKGKMWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKV 120

Query: 121 AEGKSGCLWEQFEVYRHLKSLGFIVGKNKVPWSLKNVRNGSDISSPSSIENKGASDVKSE 180
           ++GK GC WE FE YRHLKSLG+IVG++ +PW+ K  +   D S   + E    +D  SE
Sbjct: 121 SQGKCGCCWESFEAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSE 180

Query: 181 DERSISELLDAIQLDEVTPIFDVFLPHNRFRKSSPGDPNFMVCLTRGYPPSKEDIEILER 240
           +E S  EL++ + + EV  +FDV+LP+++FRKSSPGDP+F++CLTRG+PP K +IE LER
Sbjct: 181 EENSTIELVNNMHITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLER 240

Query: 241 TSRGIPMKYCHVEHGRVCFFSFDKVELPILP 266
               IP K+ HV HGRV FFSF++VELP+LP
Sbjct: 241 RCGSIPFKFFHVSHGRVSFFSFNRVELPVLP 270

The following BLAST results are available for this feature:
BLAST of Cla012041 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SEN54_SCHPO4.0e-0634.23Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (... [more]
BLAST of Cla012041 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXV5_CUCSA3.8e-13689.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1[more]
A0A059D747_EUCGR1.8e-7756.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1[more]
D7THT2_VITVI1.8e-7757.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08930 PE=4 SV=... [more]
V4S2K6_9ROSI2.6e-7654.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005938mg PE=4 SV=1[more]
A0A059DI98_EUCGR2.2e-7555.06Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02322 PE=4 SV=1[more]
BLAST of Cla012041 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694019|ref|XP_011653726.1|5.4e-13689.89PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus][more]
gi|659126611|ref|XP_008463274.1|1.9e-13387.64PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo][more]
gi|1009154062|ref|XP_015894967.1|7.9e-7955.64PREDICTED: uncharacterized protein LOC107428885 [Ziziphus jujuba][more]
gi|720076187|ref|XP_010279548.1|8.8e-7856.98PREDICTED: uncharacterized protein LOC104613432 [Nelumbo nucifera][more]
gi|731399816|ref|XP_010653757.1|1.5e-7754.61PREDICTED: uncharacterized protein LOC100257347 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024336tRNA_splic_suSen54_N
IPR024337tRNA_splic_suSen54
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0000379 tRNA-type intron splice site recognition and cleavage
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005575 cellular_component
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0000213 tRNA-intron endonuclease activity
molecular_function GO:0004519 endonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012041Cla012041.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 42..97
score: 2.
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 39..265
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla012041Cla97C04G072860Watermelon (97103) v2wmwmbB291
Cla012041Csa4G334710Cucumber (Chinese Long) v2cuwmB338
Cla012041MELO3C025231Melon (DHL92) v3.5.1mewmB575
Cla012041ClCG04G006280Watermelon (Charleston Gray)wcgwmB255
Cla012041CSPI04G16670Wild cucumber (PI 183967)cpiwmB345
Cla012041Cucsa.130610Cucumber (Gy14) v1cgywmB218
Cla012041Lsi01G016260Bottle gourd (USVL1VR-Ls)lsiwmB152
Cla012041CsGy4G015980Cucumber (Gy14) v2cgybwmB314
Cla012041MELO3C025231.2Melon (DHL92) v3.6.1medwmB564
Cla012041CsaV3_4G027280Cucumber (Chinese Long) v3cucwmB355
Cla012041Bhi03G001776Wax gourdwgowmB449
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla012041Wax gourdwgowmB049
Cla012041Watermelon (97103) v1wmwmB050
Cla012041Cucumber (Gy14) v1cgywmB338
Cla012041Cucurbita maxima (Rimu)cmawmB246
Cla012041Cucurbita maxima (Rimu)cmawmB633
Cla012041Cucurbita maxima (Rimu)cmawmB806
Cla012041Cucurbita maxima (Rimu)cmawmB827
Cla012041Cucurbita moschata (Rifu)cmowmB236
Cla012041Cucurbita moschata (Rifu)cmowmB624
Cla012041Cucurbita moschata (Rifu)cmowmB714
Cla012041Cucurbita moschata (Rifu)cmowmB797
Cla012041Cucurbita moschata (Rifu)cmowmB817
Cla012041Melon (DHL92) v3.5.1mewmB379
Cla012041Watermelon (Charleston Gray)wcgwmB074
Cla012041Cucumber (Chinese Long) v2cuwmB265
Cla012041Cucurbita pepo (Zucchini)cpewmB086
Cla012041Cucurbita pepo (Zucchini)cpewmB491
Cla012041Cucurbita pepo (Zucchini)cpewmB618
Cla012041Cucurbita pepo (Zucchini)cpewmB849
Cla012041Bottle gourd (USVL1VR-Ls)lsiwmB267
Cla012041Cucumber (Gy14) v2cgybwmB250
Cla012041Melon (DHL92) v3.6.1medwmB374
Cla012041Silver-seed gourdcarwmB0019
Cla012041Silver-seed gourdcarwmB0151
Cla012041Silver-seed gourdcarwmB0273
Cla012041Silver-seed gourdcarwmB0626
Cla012041Silver-seed gourdcarwmB0999
Cla012041Cucumber (Chinese Long) v3cucwmB275
Cla012041Watermelon (97103) v2wmwmbB285