Cla011634 (gene) Watermelon (97103) v1

Overview
NameCla011634
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHIV Tat-specific factor 1-like protein (Fragment) (AHRD V1 **-- E1ZWW3_CAMFO); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
LocationChr4 : 4937083 .. 4940565 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTTTGGATGGCACACCTCTTCGTCCGGGTGGAAAAATGCTAATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGTGATGTTTACTCCCTAACAATTCATTTTTTAACATATTTTACTTTTTTCTTTTTCTTTACTAACTACAATTCTTTGTTCTTCAATTTTGTGACAACCAAGCGCTTTCTTATTAACCTTTTATTTCATTTGATGAACTTCCACAAGCAGGGGACAAATTTGTATCCAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTTGGCTGGGGTAAGATTTTTACTTTTCTCTGTTTATTGAACATGTTAAGAAAATTCTATATTTCTATTTTTTATATTCTTATTCTTATTTTTATAATAGTACTTTTTTGTTCATGCCATCTAAGTTAGGCCATCACTATTTCTATTCTGTTGTGCTTGATATGTCAGGTTCTAAGAACTCGATCACTTTATTTTAATCGTTGAGAGCTGGGGTTTGAATCCTTGGATATGGATAGACATGTGTTAGGATAGGACCCATGCTTTAATAGTAAGCCTCATGCAGAAGGTGTTAGAAATAATTAGTCAGGATTTCATTAGACCACTGTTAGAAGGTGGAAAATAGATGAATTTGTTTGGGAATAGTTTCTCATAAAAAAAGTCTGTTGGGAATAATTTCCCTTTTTACCTCTCCTGGAATAATTTCAATTTTTTTTACTTTGTGTAGGTGGCCGAGACGATGCAAAAATTTCAATTCCTGCAACTGTTATTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGTTAGTTCTATAATCTTTTAGGTTTTAGCAAGTGATAACAATAGATGTTTGTTATTTTATTCGTTTCTTATTGTGAAACTGGAGTGCACTTCTACTAACTTAATAATTCTTCAGTTGAGTAGCATATTGTATTTTCTAATGTCAAATAGGAATTCAATATCATTATTACGGCCTAATATTCTAATGTCTTAACCATAAAATTTAAATTGAAATTCAAAATCATGTTTATTTATTATATTTATAGATCATTAGGAATAAATGTTTATATTAGTTCTAGGGAAAATTACTTGTTTGGTCCCTAAGTTTTGGGTCTAGTTTTTATTTGGTTCCTAGGTTTCAAAATGTTATATTTTTTTAGTCCTTATGTTTTGAGTTTGATTTCAATTTACTCAATAGGTTCCAAAATGTTACAATCTTAACTTGGCGATTTGAGTTTTATTTCAATTTTTGTTTGCTAGGTTTCAATATTCACACTTCAAACTTTAATTTTTTCACTAAATACTCACTTTCAGTTTTTAGTGTTAATGCCTATTAATTAATTTAAAAGAACTATAATTAATTTTCCTTAGTTTTTTCACTATTAAAATTAATTTTAAAAAATTTACTTCATATTAATTTTAAATTAATTATTAGGCATTTAGCGCCAAAGAGTGGAATGAGTATTTAGTAAAATAATTAAGGTTAAAAGTGTAAATCTTAAAATTTAGTGTTTAAATTGAGAGAGTACTCGAATTTCAAGGTAAAATTGTAACATTTTGAAACCTAAAAAGCAAATTGAAATCAAACTCAAAACTTAAGCACTAAAAGTGGAAAAAGGGAGTTCATATACTATAGGCCATGCAACACTTACAAAACTAACGCAGCTTAAAGGCAGTTTAAAGGAAATAAAGTTACCAACTGGTAACTCTAAAAAATTACAGTAAGAGAAGAATTAAAACATAACACTACTAAAAGAATAAACTACAGAAAGAAGCTCCCAAAGAAATATATCAGTAACGAATAACCTGTGAACTAAATGGAAACTAGATTCAAAACCTAGGGACCAAAAAGGTATTTTCCTCTGAGTTAACATTTAGGCTGACATAATTATTGTCCAGTTTTATCAACACCAGAAACCTGTCTATTAGCTTAGTCTATAGTGTTGGCCAGCGCAATATTGCCAGTCTTTCCTTTTAAATTATTTTTAGTATTTTCTTTTTTTGAACAAACAATGTGCATGTGTACCTTCATATATAGATGTGTTATGTATAATTTCCATAAATAGTTTCTAATTTGACTGAAAATATATTTGGACAGAAGTTAAGGGTAAAAACCTCGTAATATATTGTAATTGTTGATGAAACAATTGGTTCTTGTTTTGCATTTTGAATGGTAAGTAGCACCTTGTATTTTTGTAGGCTGATGAAAATTTAGCTTCAGAAATCGAAACAGATGTCAAGGAGGAATGCACAAGATTTGGTCCTGTGGATTCAGTTAAGGTAATTAACTTTTTTTTTCACCCTTTCTGAATTTCGATCTTTCTGTTTGTAATTAGTATTGTTCTGAAAAGCGAAATGCTATCGAGATAATGTGAGTCTTTGCTGGAATTTTAGCATATCGAAAATAAAGTTGTGGGGTCTTAGGTTTAAGGTACAATAGTTCTTTGTTGTTGACAATATTTAATTTTTTTTCTTTTGGTTTGGTTTGATATAGGTTTGTGAAAACCATCCACAAGGTGTGGTTCTAATAAGATTCAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTAATACATTTTGCTGTTTCTTTAATTTTGTATTTTTCAAAAGTTTTTTTTCTTTTGGTTTGGTTTGATATAGGTTTGTGAAAACCATCCACAAGGTGTGGTTCTAATAAGATTCAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTAATACATTTTGCTGTTTCTTTAATTTTGTATTTTTCAAAAGCTAATTGTTTTTGGTTTAAATCTCTTTTTTTTTTCCCATGACAATAAGAGCTTTCTATCTTGGTTTTTGAACTTAAAAAATATTTATTTTGAGTTCTAATTGATGATGATTTTGTTTTTTGAAAATTCTGTTTGTTTTTTCACAACTTTTTTTTTTACGAAACTTTTCATAAAAATGAAAAAGAGATAGAAATGCTCAAGGATACATATATCTTTAGGAGCCGTAGTCCTTGCACTTTTACCCTAAACATTTTCTCATCTAAATCCTGCAACCTATTTGGCCCTAATCAAGTCTTTTATTTTTTATTTTTTGAAGCAAATCAAGATATGTCATTCCTATGGTACAAACAAATAAGATAAAAGAGACCCAAATAGTTTGTTTTGTAAAGTTCAGGATTGCAATGAATGTTTTGAAAATTTTAAGGACAACTAGTTGAGGGATCATTATGTACATTTTAGAAGTTTAGAAACCGAAACGAGATTTGAATGTAAACTCAAAATGCTTTGGTGAAGATAGGTTCGTGTTAATAATGATTTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGCTATGGTGAGGGATCTCGAAGCCGATGCTGCTCGCTTGGAGCAGTTTGGTTCTGAGCTTGAGGCTGACTAG

mRNA sequence

ATGCAAATTTTGGATGGCACACCTCTTCGTCCGGGTGGAAAAATGCTAATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGGGACAAATTTGTATCCAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTTGGCTGGGGTGGCCGAGACGATGCAAAAATTTCAATTCCTGCAACTGTTATTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGCTGATGAAAATTTAGCTTCAGAAATCGAAACAGATGTCAAGGAGGAATGCACAAGATTTGGTCCTGTGGATTCAGTTAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGCTATGGTGAGGGATCTCGAAGCCGATGCTGCTCGCTTGGAGCAGTTTGGTTCTGAGCTTGAGGCTGACTAG

Coding sequence (CDS)

ATGCAAATTTTGGATGGCACACCTCTTCGTCCGGGTGGAAAAATGCTAATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGGGACAAATTTGTATCCAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTTGGCTGGGGTGGCCGAGACGATGCAAAAATTTCAATTCCTGCAACTGTTATTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGCTGATGAAAATTTAGCTTCAGAAATCGAAACAGATGTCAAGGAGGAATGCACAAGATTTGGTCCTGTGGATTCAGTTAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGCTATGGTGAGGGATCTCGAAGCCGATGCTGCTCGCTTGGAGCAGTTTGGTTCTGAGCTTGAGGCTGACTAG

Protein sequence

MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSVKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Homology
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BLAST of Cla011634 vs. Swiss-Prot
Match: HTSF1_HUMAN (HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKK--KKKLKKVEDKILGWGGRD 60
           +++LD   +R G K+ + V  AKF+ KG+   SKK    K  KKKL  ++ K L W    
Sbjct: 198 LKLLDEDEIR-GYKLHVEV--AKFQLKGEYDASKKKKKCKDYKKKLS-MQQKQLDWRPER 257

Query: 61  DA---KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVD----------- 120
            A   ++     VI++ MF P +   D  + +EI  D++ EC++FG +            
Sbjct: 258 RAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDG 317

Query: 121 ----SVKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSEL 163
               S +D  +A  CI+ ++GRWFGGRQI A   DG  ++ +         RL  + + L
Sbjct: 318 VASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 375

[Close]
BLAST of Cla011634 vs. Swiss-Prot
Match: HTSF1_MOUSE (HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKK--KKKLKKVEDKILGWGGRD 60
           +++LD   +R G K+ + V  AKF+ KG+   SKK    K  KKKL  ++ K L W    
Sbjct: 199 LKLLDEDEIR-GYKLHVEV--AKFQLKGEYDASKKKKKCKDYKKKLS-LQQKQLDWRPER 258

Query: 61  DA---KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVD----------- 120
            A   ++     VIL+ MF P +   D  + +EI  D++ EC++FG +            
Sbjct: 259 RAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDG 318

Query: 121 ----SVKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSEL 163
               S ++  +A  CI+ ++GRWFGGRQI A   DG  ++ +         RL  + + L
Sbjct: 319 VASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 376

[Close]
BLAST of Cla011634 vs. Swiss-Prot
Match: HTSF1_PONAB (HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKK--KKKLKKVEDKILGWGGRD 60
           +++LD   +R G K+ + V  AKF+ KG+   SKK    K  KKKL  ++ K L W    
Sbjct: 198 LKLLDEDEIR-GYKLHVEV--AKFQLKGEYDASKKKKKCKDYKKKLS-MQQKQLDWRPER 257

Query: 61  DA---KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVD----------- 120
            A   ++     VI++ MF P +   D  + +EI  D++ EC++FG +            
Sbjct: 258 RAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDG 317

Query: 121 ----SVKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSEL 163
               S +D  +A  CI+ ++GRWFGGRQI A   DG  ++ +         RL  + + L
Sbjct: 318 VASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 375

[Close]
BLAST of Cla011634 vs. Swiss-Prot
Match: UAP2_SCHPO (Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.7e-11
Identity = 54/189 (28.57%), Postives = 81/189 (42.86%), Query Frame = 1 

Query: 2   QILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDK----ILGWGGR 61
           Q+ D T  R G    M V +A  + K +K V+K V    KKK  ++  +    I  W   
Sbjct: 176 QLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDV 235

Query: 62  DDA-----KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV------ 121
           D+      K      V+L+ +FT  E+     L  +++ D+ EE  + G V +V      
Sbjct: 236 DEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKE 295

Query: 122 ---------KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHA-----MVRDLEADAAR 162
                     +  +A+ C+ LM GR+F GR + AS  DG V         + D E +  R
Sbjct: 296 PDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEKR 355

[Close]
BLAST of Cla011634 vs. TrEMBL
Match: A0A0A0KZ32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G491190 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 9.6e-82
Identity = 158/178 (88.76%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA
Sbjct: 323 MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 382

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILRFMFTPAEMRADENLASEIETDVKEE T+FGPVDSV              
Sbjct: 383 KVSIPATVILRFMFTPAEMRADENLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIR 442

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDR+DAQKCIELMNGRWFGG+QIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 443 FKDRKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 500

[Close]
BLAST of Cla011634 vs. TrEMBL
Match: A0A151U5M3_CAJCA (HIV Tat-specific factor 1 isogeny OS=Cajanus cajan GN=KK1_007243 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-72
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           +QILDGTPLRPGGK+ MSV+QAKFEQKGDKFVSK+VDNKKKKKLK+VE+K+LGWGGRDDA
Sbjct: 333 LQILDGTPLRPGGKIPMSVSQAKFEQKGDKFVSKQVDNKKKKKLKRVEEKMLGWGGRDDA 392

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILR MFTP EMRADENL  E+E DVKEECT+ GPVDSV              
Sbjct: 393 KVSIPATVILRHMFTPVEMRADENLRLELEEDVKEECTKLGPVDSVKICENHPQGVVLVK 452

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDRRDAQKCIELMNGRWFGGRQIHASEDDG VNHA+VRDL+ DA RLEQFG+ELE D
Sbjct: 453 FKDRRDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLDGDAIRLEQFGAELEGD 510

[Close]
BLAST of Cla011634 vs. TrEMBL
Match: I1LBW4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 277.7 bits (709), Expect = 9.0e-72
Identity = 138/178 (77.53%), Postives = 151/178 (84.83%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           +QILDG PLRP GK+ MSV+QAKFEQKGDKFVSK+VDNKKKKKLKKVEDK+LGWGGRDDA
Sbjct: 326 IQILDGAPLRPNGKIPMSVSQAKFEQKGDKFVSKQVDNKKKKKLKKVEDKMLGWGGRDDA 385

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILR+MF PAEMRADENL  E+E DVKEECT+ GP+DSV              
Sbjct: 386 KVSIPATVILRYMFAPAEMRADENLRLELEEDVKEECTKLGPLDSVKICENHPQGVVLVR 445

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDR+DAQKCIELMNGRWFGGRQIHASEDDG VNHA+VRDLE DA RLEQFG+ELE D
Sbjct: 446 FKDRKDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLEEDAIRLEQFGAELEGD 503

[Close]
BLAST of Cla011634 vs. TrEMBL
Match: A0A0B2Q0D8_GLYSO (HIV Tat-specific factor 1 like OS=Glycine soja GN=glysoja_020943 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.0e-72
Identity = 138/178 (77.53%), Postives = 151/178 (84.83%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           +QILDG PLRP GK+ MSV+QAKFEQKGDKFVSK+VDNKKKKKLKKVEDK+LGWGGRDDA
Sbjct: 326 IQILDGAPLRPNGKIPMSVSQAKFEQKGDKFVSKQVDNKKKKKLKKVEDKMLGWGGRDDA 385

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILR+MF PAEMRADENL  E+E DVKEECT+ GP+DSV              
Sbjct: 386 KVSIPATVILRYMFAPAEMRADENLRLELEEDVKEECTKLGPLDSVKICENHPQGVVLVR 445

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDR+DAQKCIELMNGRWFGGRQIHASEDDG VNHA+VRDLE DA RLEQFG+ELE D
Sbjct: 446 FKDRKDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLEEDAIRLEQFGAELEGD 503

[Close]
BLAST of Cla011634 vs. TrEMBL
Match: I1NII8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G218800 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.5e-71
Identity = 138/178 (77.53%), Postives = 150/178 (84.27%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           +QILDG PLRPGGK+ MSV+QAKFEQKGDKFVSK+VD KKKKKLKKVEDK+LGWGGRDDA
Sbjct: 323 IQILDGAPLRPGGKIPMSVSQAKFEQKGDKFVSKQVDGKKKKKLKKVEDKMLGWGGRDDA 382

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILR+MF PAEMRADENL  E+E DVKEECT+ GPVDSV              
Sbjct: 383 KVSIPATVILRYMFAPAEMRADENLHLELEEDVKEECTKLGPVDSVKICENHPQGVVLVR 442

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDR+DAQKCIELMNGRWFGGRQIHASEDDG VNHA+VRDLE D  RLEQFG+ELE D
Sbjct: 443 FKDRKDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLEEDVIRLEQFGAELEGD 500

[Close]
BLAST of Cla011634 vs. NCBI nr
Match: gi|659083061|ref|XP_008442164.1| (PREDICTED: splicing factor U2AF-associated protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-82
Identity = 160/178 (89.89%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA
Sbjct: 203 MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 262

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILRFMFTPAEMRADENLASEIETDVKEE T+FGPVDSV              
Sbjct: 263 KVSIPATVILRFMFTPAEMRADENLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIR 322

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 323 FKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 380

[Close]
BLAST of Cla011634 vs. NCBI nr
Match: gi|659083059|ref|XP_008442163.1| (PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-82
Identity = 160/178 (89.89%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA
Sbjct: 321 MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 380

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILRFMFTPAEMRADENLASEIETDVKEE T+FGPVDSV              
Sbjct: 381 KVSIPATVILRFMFTPAEMRADENLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIR 440

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 441 FKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 498

[Close]
BLAST of Cla011634 vs. NCBI nr
Match: gi|778694873|ref|XP_011653887.1| (PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 158/178 (88.76%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA
Sbjct: 321 MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 380

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILRFMFTPAEMRADENLASEIETDVKEE T+FGPVDSV              
Sbjct: 381 KVSIPATVILRFMFTPAEMRADENLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIR 440

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDR+DAQKCIELMNGRWFGG+QIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 441 FKDRKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 498

[Close]
BLAST of Cla011634 vs. NCBI nr
Match: gi|700199615|gb|KGN54773.1| (hypothetical protein Csa_4G491190 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 158/178 (88.76%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA
Sbjct: 323 MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 382

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILRFMFTPAEMRADENLASEIETDVKEE T+FGPVDSV              
Sbjct: 383 KVSIPATVILRFMFTPAEMRADENLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIR 442

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDR+DAQKCIELMNGRWFGG+QIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 443 FKDRKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 500

[Close]
BLAST of Cla011634 vs. NCBI nr
Match: gi|1012363375|gb|KYP74558.1| (HIV Tat-specific factor 1 isogeny [Cajanus cajan])

HSP 1 Score: 280.0 bits (715), Expect = 2.6e-72
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 1 

Query: 1   MQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDA 60
           +QILDGTPLRPGGK+ MSV+QAKFEQKGDKFVSK+VDNKKKKKLK+VE+K+LGWGGRDDA
Sbjct: 333 LQILDGTPLRPGGKIPMSVSQAKFEQKGDKFVSKQVDNKKKKKLKRVEEKMLGWGGRDDA 392

Query: 61  KISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSV-------------- 120
           K+SIPATVILR MFTP EMRADENL  E+E DVKEECT+ GPVDSV              
Sbjct: 393 KVSIPATVILRHMFTPVEMRADENLRLELEEDVKEECTKLGPVDSVKICENHPQGVVLVK 452

Query: 121 -KDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 164
            KDRRDAQKCIELMNGRWFGGRQIHASEDDG VNHA+VRDL+ DA RLEQFG+ELE D
Sbjct: 453 FKDRRDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLDGDAIRLEQFGAELEGD 510

The following BLAST results are available for this feature:
BLAST of Cla011634 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HTSF1_HUMAN6.7e-1231.32HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1[more]
HTSF1_MOUSE6.7e-1231.32HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1[more]
HTSF1_PONAB6.7e-1231.32HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1[more]
UAP2_SCHPO9.7e-1128.57Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 9... [more]
BLAST of Cla011634 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ32_CUCSA9.6e-8288.76Uncharacterized protein OS=Cucumis sativus GN=Csa_4G491190 PE=4 SV=1[more]
A0A151U5M3_CAJCA1.8e-7278.09HIV Tat-specific factor 1 isogeny OS=Cajanus cajan GN=KK1_007243 PE=4 SV=1[more]
I1LBW4_SOYBN9.0e-7277.53Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0B2Q0D8_GLYSO9.0e-7277.53HIV Tat-specific factor 1 like OS=Glycine soja GN=glysoja_020943 PE=4 SV=1[more]
I1NII8_SOYBN1.5e-7177.53Uncharacterized protein OS=Glycine max GN=GLYMA_20G218800 PE=4 SV=1[more]
BLAST of Cla011634 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083061|ref|XP_008442164.1|2.8e-8289.89PREDICTED: splicing factor U2AF-associated protein 2 isoform X2 [Cucumis melo][more]
gi|659083059|ref|XP_008442163.1|2.8e-8289.89PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Cucumis melo][more]
gi|778694873|ref|XP_011653887.1|1.4e-8188.76PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus][more]
gi|700199615|gb|KGN54773.1|1.4e-8188.76hypothetical protein Csa_4G491190 [Cucumis sativus][more]
gi|1012363375|gb|KYP74558.1|2.6e-7278.09HIV Tat-specific factor 1 isogeny [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011634Cla011634.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 109..131
score: 1.4E-5coord: 68..108
score: 1.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 63..132
score: 4.34
NoneNo IPR availableunknownCoilCoilcoord: 143..163
scor
NoneNo IPR availablePANTHERPTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2coord: 1..163
score: 1.1
NoneNo IPR availablePANTHERPTHR15608:SF0HIV TAT-SPECIFIC FACTOR 1coord: 1..163
score: 1.1