Cla011631 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011631
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Amino acid permease (AHRD V1 ***- B9H7I5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane
Location	Chr4 : 4835915 .. 4836224 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTGCTTCCCTTCAGCGATTCCGCTATCTTCGACGATGATGGACGCCCAAAACGAACCGGTACCTAACCGGAGCTAGAAATTTTACATTCATATAATCTCTTAACATAATACACACGTACGTTTTCACAAATGCGCTCTCTTAATTTCTTCTTTGTGCTTGGGTTCATAATATGTTTTAGGTACGTTTTGGACGGCAAGTGCTCACATAATCACTACCGTGATTGGTTCGGGTGTGTTATCGTTAGCGTGGGCGATCGCTCAGCTCGGGTGGATCGCAGGTCCCTCCTTGGAGTCCTTAATTTGA

mRNA sequence

ATGGCCGTGCTTCCCTTCAGCGATTCCGCTATCTTCGACGATGATGGACGCCCAAAACGAACCGGTACGTTTTGGACGGCAAGTGCTCACATAATCACTACCGTGATTGGTTCGGGTGTGTTATCGTTAGCGTGGGCGATCGCTCAGCTCGGGTGGATCGCAGGTCCCTCCTTGGAGTCCTTAATTTGA

Coding sequence (CDS)

ATGGCCGTGCTTCCCTTCAGCGATTCCGCTATCTTCGACGATGATGGACGCCCAAAACGAACCGGTACGTTTTGGACGGCAAGTGCTCACATAATCACTACCGTGATTGGTTCGGGTGTGTTATCGTTAGCGTGGGCGATCGCTCAGCTCGGGTGGATCGCAGGTCCCTCCTTGGAGTCCTTAATTTGA

Protein sequence

MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSLESLI

Homology

[Close]

BLAST of Cla011631 vs. Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-19
Identity = 44/54 (81.48%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 3  VLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGP 57
          VLP   S  FDDDGRPKRTGT WTASAHIIT VIGSGVLSLAWA+AQ+GWI GP
Sbjct: 11 VLPKHSSDSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWIGGP 64

[Close]

BLAST of Cla011631 vs. Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-18
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 12 FDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          FDDDGR KRTGT WTASAHIIT VIGSGVLSLAWAIAQLGWIAGP++
Sbjct: 38 FDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAV 84

[Close]

BLAST of Cla011631 vs. Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-17
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 13 DDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          DDDGR KRTGTFWTASAHIIT VIGSGVLSLAWAIAQLGW+AG ++
Sbjct: 21 DDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTV 66

[Close]

BLAST of Cla011631 vs. Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.7e-17
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 1


Query: 12 FDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          FDDDGR KR+GT WTASAHIIT VIGSGVLSLAWAI QLGWIAGP++
Sbjct: 11 FDDDGRLKRSGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPTV 57

[Close]

BLAST of Cla011631 vs. Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.5e-16
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1


Query: 12 FDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          FD+DGR KRTGT+ T SAHIIT VIGSGVLSLAWAIAQLGW+AGP++
Sbjct: 25 FDEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIAQLGWVAGPAV 71

[Close]

BLAST of Cla011631 vs. TrEMBL
Match: A0A0A0KZI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G573860 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-21
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 1  MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          MAVLP +DS+ FDDDG PKRTGT WTASAHIITTVIGSGVLSLAWAIAQLGWI GPS+
Sbjct: 1  MAVLPLNDSSSFDDDGHPKRTGTLWTASAHIITTVIGSGVLSLAWAIAQLGWIVGPSV 58

[Close]

BLAST of Cla011631 vs. TrEMBL
Match: V4KUJ4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011449mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 1  MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          M VLP + S +FD+DGRPKRTGT WTASAHIIT VIGSGVLSLAWA+AQ+GW+ GP++
Sbjct: 11 MGVLPQNSSELFDEDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWVGGPAV 68

[Close]

BLAST of Cla011631 vs. TrEMBL
Match: R0GWT6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009009mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.8e-18
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 3  VLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGP 57
          VLP S S +FDDDGRPKRTGT WTASAHIIT VIGSGVLSLAWA+AQ+GW+ GP
Sbjct: 11 VLPRSSSDLFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWVGGP 64

[Close]

BLAST of Cla011631 vs. TrEMBL
Match: A0A0L9UG70_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g173700 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.3e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 8  DSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          DS  FDDDGRPKRTGT WTASAHIIT VIGSGVLSLAWAIAQLGWIAGP++
Sbjct: 27 DSKCFDDDGRPKRTGTLWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAV 77

[Close]

BLAST of Cla011631 vs. TrEMBL
Match: M4F779_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.3e-18
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1


Query: 3  VLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGP 57
          VLP S S + DDDGRPKRTGT WT SAHIIT VIGSGVLSLAWAIAQLGW+AGP
Sbjct: 12 VLPRSSSGLLDDDGRPKRTGTVWTTSAHIITAVIGSGVLSLAWAIAQLGWVAGP 65

[Close]

BLAST of Cla011631 vs. NCBI nr
Match: gi|659083078|ref|XP_008442173.1| (PREDICTED: amino acid permease 4-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 4.6e-22
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          MAVLP +DSA FDDDGRPKRTGTFWTASAHIIT VIGSGVLSLAWAIAQLGWIAGPS+
Sbjct: 1  MAVLPVNDSASFDDDGRPKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPSV 58

[Close]

BLAST of Cla011631 vs. NCBI nr
Match: gi|659083287|ref|XP_008442267.1| (PREDICTED: amino acid permease 4-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 6.7e-21
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 1  MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          MAVLP +DSA  DDDG PKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWI GPS+
Sbjct: 1  MAVLPVNDSASLDDDGHPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIVGPSV 58

[Close]

BLAST of Cla011631 vs. NCBI nr
Match: gi|778695190|ref|XP_011653944.1| (PREDICTED: amino acid permease 4 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 1  MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          MAVLP +DS+ FDDDG PKRTGT WTASAHIITTVIGSGVLSLAWAIAQLGWI GPS+
Sbjct: 1  MAVLPLNDSSSFDDDGHPKRTGTLWTASAHIITTVIGSGVLSLAWAIAQLGWIVGPSV 58

[Close]

BLAST of Cla011631 vs. NCBI nr
Match: gi|729303854|ref|XP_010527720.1| (PREDICTED: amino acid permease 5-like isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 1  MAVLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          M VLP + S +FDDDGRPKRTGT WTASAHIIT VIGSGVLSLAWA+AQLGW+AGP++
Sbjct: 15 MDVLPKNRSDLFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQLGWVAGPAV 72

[Close]

BLAST of Cla011631 vs. NCBI nr
Match: gi|729311273|ref|XP_010530203.1| (PREDICTED: amino acid permease 5 [Tarenaya hassleriana])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 3  VLPFSDSAIFDDDGRPKRTGTFWTASAHIITTVIGSGVLSLAWAIAQLGWIAGPSL 59
          VLP S S +FDDDGRPKRTGT WTASAHIIT VIGSGVLSLAWA+AQLGW+AGP++
Sbjct: 17 VLPKSSSDLFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAMAQLGWVAGPAV 72

The following BLAST results are available for this feature:

BLAST of Cla011631 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AAP5_ARATH	3.7e-19	81.48	Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1	[more]
AAP2_ARATH	9.1e-18	89.36	Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1	[more]
AAP8_ARATH	4.5e-17	86.96	Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1	[more]
AAP4_ARATH	7.7e-17	85.11	Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1	[more]
AAP6_ARATH	8.5e-16	80.85	Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1	[more]

BLAST of Cla011631 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZI6_CUCSA	8.0e-21	86.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G573860 PE=4 SV=1	[more]
V4KUJ4_EUTSA	3.7e-18	74.14	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011449mg PE=4 SV=1	[more]
R0GWT6_9BRAS	4.8e-18	81.48	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009009mg PE=4 SV=1	[more]
A0A0L9UG70_PHAAN	6.3e-18	88.24	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g173700 PE=4 SV=1	[more]
M4F779_BRARP	6.3e-18	83.33	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Cla011631 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083078\|ref\|XP_008442173.1\|	4.6e-22	91.38	PREDICTED: amino acid permease 4-like [Cucumis melo]	[more]
gi\|659083287\|ref\|XP_008442267.1\|	6.7e-21	87.93	PREDICTED: amino acid permease 4-like [Cucumis melo]	[more]
gi\|778695190\|ref\|XP_011653944.1\|	1.1e-20	86.21	PREDICTED: amino acid permease 4 [Cucumis sativus]	[more]
gi\|729303854\|ref\|XP_010527720.1\|	1.4e-18	79.31	PREDICTED: amino acid permease 5-like isoform X2 [Tarenaya hassleriana]	[more]
gi\|729311273\|ref\|XP_010530203.1\|	1.4e-18	82.14	PREDICTED: amino acid permease 5 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011631	Cla011631.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 20..58 score: 2.5
None	No IPR available	PANTHER	PTHR22950	AMINO ACID TRANSPORTER	coord: 7..56 score: 2.1
None	No IPR available	PANTHER	PTHR22950:SF205	AMINO ACID PERMEASE 3-RELATED	coord: 7..56 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011631	Melon (DHL92) v3.6.1	medwmB565
Cla011631	Silver-seed gourd	carwmB0275
Cla011631	Silver-seed gourd	carwmB0277
Cla011631	Cucumber (Chinese Long) v3	cucwmB357
Cla011631	Watermelon (97103) v2	wmwmbB292
Cla011631	Wax gourd	wgowmB442
Cla011631	Cucurbita maxima (Rimu)	cmawmB831
Cla011631	Cucurbita maxima (Rimu)	cmawmB839
Cla011631	Cucurbita moschata (Rifu)	cmowmB821
Cla011631	Melon (DHL92) v3.5.1	mewmB576
Cla011631	Watermelon (Charleston Gray)	wcgwmB256
Cla011631	Cucumber (Chinese Long) v2	cuwmB333
Cla011631	Cucumber (Chinese Long) v2	cuwmB341
Cla011631	Cucurbita pepo (Zucchini)	cpewmB489
Cla011631	Cucurbita pepo (Zucchini)	cpewmB496
Cla011631	Bottle gourd (USVL1VR-Ls)	lsiwmB146
Cla011631	Cucumber (Gy14) v2	cgybwmB316