Cla011630 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011630
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin
Location	Chr4 : 4835576 .. 4835960 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCAAAGTATGATGGCAAATACTTGCGGTCATTGATAAATGGATTGCTTGGAGATATAACACTCAAGGAAACTCTAACACAAGTCATTATTCCTGCTTTCGACATTAAGCTTCTTCAACCTGTGATTTTCACCACAGTCGATGTACGGAAATAATTTATCATAACTGTTTTTCATGCTAATATCTATTCCTTTTTTTTTTTTTCTTTTCCAAATGAACCATTAACATAAACTCGCATTTATTCAGGCTAAATTTGATGAGTTAAAGAATCCAAAATTAGCAGATGTTTGCATCAGTACTTCAGCAGCACCAACTCTCTTACCTAGTCACGAATTTCAAATTAAGGACTCCAAGGAGGGACCTGCGATCCACCCGAGCTGA

mRNA sequence

ATGGGTCCAAAGTATGATGGCAAATACTTGCGGTCATTGATAAATGGATTGCTTGGAGATATAACACTCAAGGAAACTCTAACACAAGTCATTATTCCTGCTTTCGACATTAAGCTTCTTCAACCTGTGATTTTCACCACAGTCGATGCTAAATTTGATGAGTTAAAGAATCCAAAATTAGCAGATGTTTGCATCAGTACTTCAGCAGCACCAACTCTCTTACCTAGTCACGAATTTCAAATTAAGGACTCCAAGGAGGGACCTGCGATCCACCCGAGCTGA

Coding sequence (CDS)

ATGGGTCCAAAGTATGATGGCAAATACTTGCGGTCATTGATAAATGGATTGCTTGGAGATATAACACTCAAGGAAACTCTAACACAAGTCATTATTCCTGCTTTCGACATTAAGCTTCTTCAACCTGTGATTTTCACCACAGTCGATGCTAAATTTGATGAGTTAAAGAATCCAAAATTAGCAGATGTTTGCATCAGTACTTCAGCAGCACCAACTCTCTTACCTAGTCACGAATTTCAAATTAAGGACTCCAAGGAGGGACCTGCGATCCACCCGAGCTGA

Protein sequence

MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLADVCISTSAAPTLLPSHEFQIKDSKEGPAIHPS

Homology

[Close]

BLAST of Cla011630 vs. Swiss-Prot
Match: PLP1_ORYSJ (Patatin-like protein 1 OS=Oryza sativa subsp. japonica GN=PLP1 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 3   PKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLAD 62
           P+Y+GKYL+  I  +LG+  +++TLT V+IP FD++LLQP IF+T DAK   LKN  L+D
Sbjct: 136 PRYNGKYLQGKIRKMLGETRVRDTLTNVVIPTFDVRLLQPTIFSTYDAKSMPLKNALLSD 195

Query: 63  VCISTSAAPTLLPSHEFQIKDSKEG 88
           +CISTSAAPT LP+H FQ  D   G
Sbjct: 196 ICISTSAAPTYLPAHCFQTTDDATG 220

[Close]

BLAST of Cla011630 vs. Swiss-Prot
Match: PLP1_ORYSI (Patatin-like protein 1 OS=Oryza sativa subsp. indica GN=PLP1 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 3   PKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLAD 62
           P+Y+GKYL+  I  +LG+  +++TLT V+IP FD++LLQP IF+T DAK   LKN  L+D
Sbjct: 118 PRYNGKYLQGKIRKMLGETRVRDTLTNVVIPTFDVRLLQPTIFSTYDAKSMPLKNALLSD 177

Query: 63  VCISTSAAPTLLPSHEFQIKDSKEG 88
           +CISTSAAPT LP+H FQ  D   G
Sbjct: 178 ICISTSAAPTYLPAHCFQTTDDATG 202

[Close]

BLAST of Cla011630 vs. Swiss-Prot
Match: PLP2_ARATH (Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-21
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 2   GPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLA 61
           GPKYDGKYL  LI+  LGD  L +TLT V+IP FDIK LQP IF++ + K   LK+  LA
Sbjct: 122 GPKYDGKYLHQLIHAKLGDTKLSQTLTNVVIPTFDIKHLQPTIFSSYEVKNHPLKDATLA 181

Query: 62  DVCISTSAAPTLLPSHEFQIKD 84
           D+ ISTSAAPT LP+H F+++D
Sbjct: 182 DIAISTSAAPTYLPAHFFKVED 203

[Close]

BLAST of Cla011630 vs. Swiss-Prot
Match: PLP3_ARATH (Patatin-like protein 3 OS=Arabidopsis thaliana GN=PLP3 PE=2 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-21
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 2   GPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLA 61
           GPK++GKYL  L+ G LGD  L ++LT V+IP FDIK LQPVIF++  A  ++  N KL+
Sbjct: 146 GPKFNGKYLHDLVEGFLGDTKLTQSLTNVVIPCFDIKKLQPVIFSSYQAVNNQAMNAKLS 205

Query: 62  DVCISTSAAPTLLPSHEFQIKDSK 86
           D+CISTSAAPT  P+H F  +DS+
Sbjct: 206 DICISTSAAPTFFPAHRFTNEDSE 229

[Close]

BLAST of Cla011630 vs. Swiss-Prot
Match: PLP2_ORYSJ (Patatin-like protein 2 OS=Oryza sativa subsp. japonica GN=PLP2 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.5e-20
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 2   GPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLA 61
           GPKYDGKYL SL+   LGD  L + LT V+IP FDI  LQP IF+  + K+  LKN  L+
Sbjct: 124 GPKYDGKYLHSLLREKLGDTRLDKALTNVVIPTFDIANLQPTIFSKFELKYKPLKNALLS 183

Query: 62  DVCISTSAAPTLLPSHEFQIKD 84
           D+ ISTSAAPT  P+H F+ KD
Sbjct: 184 DISISTSAAPTFFPAHYFETKD 205

[Close]

BLAST of Cla011630 vs. TrEMBL
Match: A0A0A0LJL8_CUCSA (Patatin OS=Cucumis sativus GN=Csa_2G292850 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-35
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1   MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
           MGPKYDGKYLRSLIN LLGDITLKETLTQVIIPAFDIKLLQPVIF+T+DAK+D LKNPKL
Sbjct: 67  MGPKYDGKYLRSLINRLLGDITLKETLTQVIIPAFDIKLLQPVIFSTLDAKWDALKNPKL 126

Query: 61  ADVCISTSAAPTLLPSHEFQIKDSK 86
           ADVCISTSAAPT LP HEFQ KDSK
Sbjct: 127 ADVCISTSAAPTFLPGHEFQTKDSK 151

[Close]

BLAST of Cla011630 vs. TrEMBL
Match: A0A0A0LJW0_CUCSA (Patatin OS=Cucumis sativus GN=Csa_2G293860 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.8e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 2  GPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLA 61
          GPKYDGKYLR+LIN LLGD TLKETLTQVIIPAFDIK LQPVIFTTV+AK DELKNPKLA
Sbjct: 9  GPKYDGKYLRTLINNLLGDTTLKETLTQVIIPAFDIKRLQPVIFTTVEAKLDELKNPKLA 68

Query: 62 DVCISTSAAPTLLPSHEFQIKDSK 86
          DVCISTSAAPT+LPSHEF+IKDSK
Sbjct: 69 DVCISTSAAPTILPSHEFEIKDSK 92

[Close]

BLAST of Cla011630 vs. TrEMBL
Match: A0A0A0LM20_CUCSA (Patatin OS=Cucumis sativus GN=Csa_2G294910 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-32
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
           MGPKY+G YLRSLI GLLGDITLK+TL+QV+IPAFDIKLLQPVIFTT++AK  ELKNPKL
Sbjct: 22  MGPKYNGLYLRSLIKGLLGDITLKQTLSQVVIPAFDIKLLQPVIFTTIEAKCSELKNPKL 81

Query: 61  ADVCISTSAAPTLLPSHEFQIKDSK 86
           ADVCISTSAAPT LP +EFQ KDSK
Sbjct: 82  ADVCISTSAAPTFLPGYEFQTKDSK 106

[Close]

BLAST of Cla011630 vs. TrEMBL
Match: O23784_CUCSA (Patatin (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-32
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
           MGPKY+G YLRSLI GLLGDITLK+TL+QV+IPAFDIKLLQPVIFTT++AK  ELKNPKL
Sbjct: 126 MGPKYNGLYLRSLIKGLLGDITLKQTLSQVVIPAFDIKLLQPVIFTTIEAKCSELKNPKL 185

Query: 61  ADVCISTSAAPTLLPSHEFQIKDSK 86
           ADVCISTSAAPT LP +EFQ KDSK
Sbjct: 186 ADVCISTSAAPTFLPGYEFQTKDSK 210

[Close]

BLAST of Cla011630 vs. TrEMBL
Match: A0A0A0LQ30_CUCSA (Patatin OS=Cucumis sativus GN=Csa_2G295960 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-29
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 1  MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
          MGP+YDGKYLRS++N  LGD+TLK+TL   +IPAFDIKLLQPVIFTT DAK +ELKNP+L
Sbjct: 1  MGPRYDGKYLRSMLNEKLGDLTLKQTLAYAVIPAFDIKLLQPVIFTTNDAKSNELKNPRL 60

Query: 61 ADVCISTSAAPTLLPSHEFQIKDSKEG 88
           DVCISTSAAPT LP+H F+ KDS  G
Sbjct: 61 VDVCISTSAAPTFLPAHYFETKDSNGG 87

[Close]

BLAST of Cla011630 vs. NCBI nr
Match: gi|659116046|ref|XP_008457871.1| (PREDICTED: patatin-like protein 3 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 1


Query: 1   MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
           MGP+YDGKYLR+LIN LLGDITLKETLTQVIIPAFDIK LQPVIFTTVDAK DELKNPKL
Sbjct: 114 MGPRYDGKYLRTLINNLLGDITLKETLTQVIIPAFDIKRLQPVIFTTVDAKLDELKNPKL 173

Query: 61  ADVCISTSAAPTLLPSHEFQIKDSK 86
           ADVCISTSAAPT+LPSHEF+IKDSK
Sbjct: 174 ADVCISTSAAPTILPSHEFEIKDSK 198

[Close]

BLAST of Cla011630 vs. NCBI nr
Match: gi|778670099|ref|XP_011649366.1| (PREDICTED: patatin-like protein 2 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-35
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1   MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
           MGPKYDGKYLRSLIN LLGDITLKETLTQVIIPAFDIKLLQPVIF+T+DAK+D LKNPKL
Sbjct: 116 MGPKYDGKYLRSLINRLLGDITLKETLTQVIIPAFDIKLLQPVIFSTLDAKWDALKNPKL 175

Query: 61  ADVCISTSAAPTLLPSHEFQIKDSK 86
           ADVCISTSAAPT LP HEFQ KDSK
Sbjct: 176 ADVCISTSAAPTFLPGHEFQTKDSK 200

[Close]

BLAST of Cla011630 vs. NCBI nr
Match: gi|700206936|gb|KGN62055.1| (hypothetical protein Csa_2G292850 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-35
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1   MGPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKL 60
           MGPKYDGKYLRSLIN LLGDITLKETLTQVIIPAFDIKLLQPVIF+T+DAK+D LKNPKL
Sbjct: 67  MGPKYDGKYLRSLINRLLGDITLKETLTQVIIPAFDIKLLQPVIFSTLDAKWDALKNPKL 126

Query: 61  ADVCISTSAAPTLLPSHEFQIKDSK 86
           ADVCISTSAAPT LP HEFQ KDSK
Sbjct: 127 ADVCISTSAAPTFLPGHEFQTKDSK 151

[Close]

BLAST of Cla011630 vs. NCBI nr
Match: gi|449460638|ref|XP_004148052.1| (PREDICTED: patatin-like protein 3 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 5.5e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 2   GPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLA 61
           GPKYDGKYLR+LIN LLGD TLKETLTQVIIPAFDIK LQPVIFTTV+AK DELKNPKLA
Sbjct: 115 GPKYDGKYLRTLINNLLGDTTLKETLTQVIIPAFDIKRLQPVIFTTVEAKLDELKNPKLA 174

Query: 62  DVCISTSAAPTLLPSHEFQIKDSK 86
           DVCISTSAAPT+LPSHEF+IKDSK
Sbjct: 175 DVCISTSAAPTILPSHEFEIKDSK 198

[Close]

BLAST of Cla011630 vs. NCBI nr
Match: gi|700206939|gb|KGN62058.1| (hypothetical protein Csa_2G293860 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 5.5e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 2  GPKYDGKYLRSLINGLLGDITLKETLTQVIIPAFDIKLLQPVIFTTVDAKFDELKNPKLA 61
          GPKYDGKYLR+LIN LLGD TLKETLTQVIIPAFDIK LQPVIFTTV+AK DELKNPKLA
Sbjct: 9  GPKYDGKYLRTLINNLLGDTTLKETLTQVIIPAFDIKRLQPVIFTTVEAKLDELKNPKLA 68

Query: 62 DVCISTSAAPTLLPSHEFQIKDSK 86
          DVCISTSAAPT+LPSHEF+IKDSK
Sbjct: 69 DVCISTSAAPTILPSHEFEIKDSK 92

The following BLAST results are available for this feature:

BLAST of Cla011630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PLP1_ORYSJ	1.6e-21	56.47	Patatin-like protein 1 OS=Oryza sativa subsp. japonica GN=PLP1 PE=3 SV=1	[more]
PLP1_ORYSI	1.6e-21	56.47	Patatin-like protein 1 OS=Oryza sativa subsp. indica GN=PLP1 PE=3 SV=1	[more]
PLP2_ARATH	2.6e-21	59.76	Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1	[more]
PLP3_ARATH	2.6e-21	55.95	Patatin-like protein 3 OS=Arabidopsis thaliana GN=PLP3 PE=2 SV=2	[more]
PLP2_ORYSJ	6.5e-20	57.32	Patatin-like protein 2 OS=Oryza sativa subsp. japonica GN=PLP2 PE=3 SV=1	[more]

BLAST of Cla011630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJL8_CUCSA	2.9e-35	90.59	Patatin OS=Cucumis sativus GN=Csa_2G292850 PE=3 SV=1	[more]
A0A0A0LJW0_CUCSA	3.8e-35	90.48	Patatin OS=Cucumis sativus GN=Csa_2G293860 PE=3 SV=1	[more]
A0A0A0LM20_CUCSA	2.3e-32	83.53	Patatin OS=Cucumis sativus GN=Csa_2G294910 PE=3 SV=1	[more]
O23784_CUCSA	2.3e-32	83.53	Patatin (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0LQ30_CUCSA	4.1e-29	73.56	Patatin OS=Cucumis sativus GN=Csa_2G295960 PE=3 SV=1	[more]

BLAST of Cla011630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116046\|ref\|XP_008457871.1\|	2.9e-36	91.76	PREDICTED: patatin-like protein 3 [Cucumis melo]	[more]
gi\|778670099\|ref\|XP_011649366.1\|	4.2e-35	90.59	PREDICTED: patatin-like protein 2 [Cucumis sativus]	[more]
gi\|700206936\|gb\|KGN62055.1\|	4.2e-35	90.59	hypothetical protein Csa_2G292850 [Cucumis sativus]	[more]
gi\|449460638\|ref\|XP_004148052.1\|	5.5e-35	90.48	PREDICTED: patatin-like protein 3 [Cucumis sativus]	[more]
gi\|700206939\|gb\|KGN62058.1\|	5.5e-35	90.48	hypothetical protein Csa_2G293860 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016035	Acyl_Trfase/lysoPLipase

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011630	Cla011630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	unknown	SSF52151	FabD/lysophospholipase-like	coord: 2..87 score: 1.31
None	No IPR available	GENE3D	G3DSA:3.40.1090.10		coord: 2..86 score: 1.1
None	No IPR available	PANTHER	PTHR32176	FAMILY NOT NAMED	coord: 1..87 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011630	Cucurbita maxima (Rimu)	cmawmB831
Cla011630	Cucurbita maxima (Rimu)	cmawmB839
Cla011630	Cucurbita moschata (Rifu)	cmowmB821
Cla011630	Melon (DHL92) v3.5.1	mewmB576
Cla011630	Watermelon (Charleston Gray)	wcgwmB256
Cla011630	Cucumber (Chinese Long) v2	cuwmB333
Cla011630	Cucumber (Chinese Long) v2	cuwmB341
Cla011630	Cucurbita pepo (Zucchini)	cpewmB489
Cla011630	Cucurbita pepo (Zucchini)	cpewmB496
Cla011630	Bottle gourd (USVL1VR-Ls)	lsiwmB146
Cla011630	Cucumber (Gy14) v2	cgybwmB316
Cla011630	Melon (DHL92) v3.6.1	medwmB565
Cla011630	Silver-seed gourd	carwmB0275
Cla011630	Silver-seed gourd	carwmB0277
Cla011630	Cucumber (Chinese Long) v3	cucwmB357
Cla011630	Watermelon (97103) v2	wmwmbB292
Cla011630	Wax gourd	wgowmB442