Cla011618 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011618
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 4189065 .. 4189289 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTATGGACGAACCGAGGTCTAGTAGTGGTCGCTAGTGCTGTGAGTAAGCCTATAGCCCTTGATACGGCTACTAAGGAGAGTTGTAGGTTGTCCTATGCTAGAGTGTGTATGGAGGTTGATGGTGAATCAGAGTTGCCTGCTACTATGATGGTAAGGATTAAGGGTCAGGATTTTGTTGTTCTGGTTGAATGGAAACCTCAAAGGTGTTCAGCAGTGTAA

mRNA sequence

ATGGAGTTATGGACGAACCGAGGTCTAGTAGTGGTCGCTAGTGCTGTGAGTAAGCCTATAGCCCTTGATACGGCTACTAAGGAGAGTTGTAGGTTGTCCTATGCTAGAGTGTGTATGGAGGTTGATGGTGAATCAGAGTTGCCTGCTACTATGATGGTAAGGATTAAGGGTCAGGATTTTGTTGTTCTGGTTGAATGGAAACCTCAAAGGTGTTCAGCAGTGTAA

Coding sequence (CDS)

ATGGAGTTATGGACGAACCGAGGTCTAGTAGTGGTCGCTAGTGCTGTGAGTAAGCCTATAGCCCTTGATACGGCTACTAAGGAGAGTTGTAGGTTGTCCTATGCTAGAGTGTGTATGGAGGTTGATGGTGAATCAGAGTTGCCTGCTACTATGATGGTAAGGATTAAGGGTCAGGATTTTGTTGTTCTGGTTGAATGGAAACCTCAAAGGTGTTCAGCAGTGTAA

Protein sequence

MELWTNRGLVVVASAVSKPIALDTATKESCRLSYARVCMEVDGESELPATMMVRIKGQDFVVLVEWKPQRCSAV

Homology

[Close]

BLAST of Cla011618 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-17
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 1   MELWTNRGLVVVASAVSKPIALDTATKESCRLSYARVCMEVDGESELPATMMVRIKGQDF 60
           MELWT  GL VVASAV KPI LD ATKE  RLSYARVC+++DG+S +PA + V ++G DF
Sbjct: 224 MELWTEAGLAVVASAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPAEITVSLRGVDF 283

Query: 61  VVLV--EWKPQRCS 73
           +V +  EWKP +C+
Sbjct: 284 IVSINYEWKPWKCN 297

[Close]

BLAST of Cla011618 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 1   MELWTNRGLVVVASAVSKPIALDTATKESCRLSYARVCMEVDGESELPATMMVRIKGQDF 60
           MELWT  GL VVASAV KPI+LD ATKE  RLSYARVC+E++  S +PA + V ++G DF
Sbjct: 252 MELWTEAGLAVVASAVGKPISLDLATKERRRLSYARVCVELEAGSNMPAEITVSLRGVDF 311

Query: 61  VVLV--EWKPQRCS 73
            V V  EWKP++C+
Sbjct: 312 NVSVNYEWKPRKCN 325

[Close]

BLAST of Cla011618 vs. NCBI nr
Match: gi|659133524|ref|XP_008466769.1| (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 1  MELWTNRGLVVVASAVSKPIALDTATKESCRLSYARVCMEVDGESELPATMMVRIKGQDF 60
          MELWT  GL VVASAV KPI+LD  TKE  RLSYARVC+E++G S +PA + V + G DF
Sbjct: 1  MELWTEAGLAVVASAVGKPISLDLTTKERRRLSYARVCVELEGGSNMPAQITVSLGGVDF 60

Query: 61 VVLV--EWKPQRCS 73
           V +  EWKP++C+
Sbjct: 61 NVSINYEWKPRKCN 74

[Close]

BLAST of Cla011618 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-15
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 1   MELWTNRGLVVVASAVSKPIALDTATKESCRLSYARVCMEVDGESELPATMMVRIKGQDF 60
           MELWT  GL VVA AV KPI+LD ATKE  RLSYARVC+E++G S +P+ + V ++G +F
Sbjct: 372 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 431

Query: 61  VVLV--EWKPQRCS 73
            V V  EWKP++C+
Sbjct: 432 NVSVKYEWKPRKCN 445

[Close]

BLAST of Cla011618 vs. NCBI nr
Match: gi|778697698|ref|XP_004142722.2| (PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-11
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1


Query: 1  MELWTNRGLVVVASAVSKPIALDTATKESCRLSYARVCMEVDGESELPATMMVRIKGQDF 60
          MELW N  L VVASA+ K ++LD ATKE  +LS+ARVC+E++ ES + A + V ++  DF
Sbjct: 26 MELWINIRLDVVASAIGKHLSLDLATKERRKLSFARVCVELNVESPMLAEITVNLRRVDF 85

Query: 61 VVLV--EWKPQRCS 73
          +V V  EWKP++C+
Sbjct: 86 IVTVNYEWKPRKCN 99

The following BLAST results are available for this feature:

BLAST of Cla011618 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114595\|ref\|XP_008457134.1\|	7.0e-17	60.81	PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]	[more]
gi\|659126448\|ref\|XP_008463187.1\|	1.3e-15	60.81	PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo]	[more]
gi\|659133524\|ref\|XP_008466769.1\|	2.9e-15	59.46	PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]	[more]
gi\|659121150\|ref\|XP_008460523.1\|	3.9e-15	58.11	PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo]	[more]
gi\|778697698\|ref\|XP_004142722.2\|	5.8e-11	51.35	PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011618	Cla011618.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31286	FAMILY NOT NAMED	coord: 1..72 score: 4.3
None	No IPR available	PANTHER	PTHR31286:SF5	SUBFAMILY NOT NAMED	coord: 1..72 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011618	ClCG04G001560	Watermelon (Charleston Gray)	wcgwmB256

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011618	Cucurbita maxima (Rimu)	cmawmB839
Cla011618	Cucurbita moschata (Rifu)	cmowmB628
Cla011618	Cucurbita moschata (Rifu)	cmowmB830
Cla011618	Melon (DHL92) v3.5.1	mewmB576
Cla011618	Cucumber (Chinese Long) v2	cuwmB341
Cla011618	Cucurbita pepo (Zucchini)	cpewmB489
Cla011618	Bottle gourd (USVL1VR-Ls)	lsiwmB146
Cla011618	Cucumber (Gy14) v2	cgybwmB316
Cla011618	Melon (DHL92) v3.6.1	medwmB565
Cla011618	Silver-seed gourd	carwmB0277
Cla011618	Cucumber (Chinese Long) v3	cucwmB357
Cla011618	Watermelon (97103) v2	wmwmbB292
Cla011618	Wax gourd	wgowmB442
Cla011618	Cucumber (Gy14) v1	cgywmB643