Cla011605 (gene) Watermelon (97103) v1

Overview
NameCla011605
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 3926475 .. 3926900 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTACTCGCAAGCCGAAGATATTCTTGACAGAATTTCTTCGAATACCAATGAGTGGGTGGACGACGGATATGTATTTCGCTCCACTGATAGAAGGCAAATGCAAGCTGGAATGCTTGAAGCTGATGCTGCCACTAATCTCTCAGCGCAGATGAGAACCATGACATCTCTGCTGAAGACAGCCTTGAATAACCAAGGTAGATCAGTTGTTGTGATGAACGCAGTGAATTCGATAGCGTTTGTAAGATGCCCGCAGTGTGGTGCGGGGCACTTGTATGACATGTGTCCCTACAACATCCAGTCAATCTGCAGTGTTCAAAACAACCCCTACGATGAGACGTACTGTCACACCCCCTCCCGGACTATCCTCCATAACCCGAAAAGAGATGTGAAGACAACAGTTACCGACTACCCTATCACATAA

mRNA sequence

ATGACCTACTCGCAAGCCGAAGATATTCTTGACAGAATTTCTTCGAATACCAATGAGTGGGTGGACGACGGATATGTATTTCGCTCCACTGATAGAAGGCAAATGCAAGCTGGAATGCTTGAAGCTGATGCTGCCACTAATCTCTCAGCGCAGATGAGAACCATGACATCTCTGCTGAAGACAGCCTTGAATAACCAAGGTAGATCAGTTGTTGTGATGAACGCAGTGAATTCGATAGCGTTTGTAAGATGCCCGCAGTGTGGTGCGGGGCACTTGTATGACATGTGTCCCTACAACATCCAGTCAATCTGCAGTGTTCAAAACAACCCCTACGATGAGACGTACTGTCACACCCCCTCCCGGACTATCCTCCATAACCCGAAAAGAGATGTGAAGACAACAGTTACCGACTACCCTATCACATAA

Coding sequence (CDS)

ATGACCTACTCGCAAGCCGAAGATATTCTTGACAGAATTTCTTCGAATACCAATGAGTGGGTGGACGACGGATATGTATTTCGCTCCACTGATAGAAGGCAAATGCAAGCTGGAATGCTTGAAGCTGATGCTGCCACTAATCTCTCAGCGCAGATGAGAACCATGACATCTCTGCTGAAGACAGCCTTGAATAACCAAGGTAGATCAGTTGTTGTGATGAACGCAGTGAATTCGATAGCGTTTGTAAGATGCCCGCAGTGTGGTGCGGGGCACTTGTATGACATGTGTCCCTACAACATCCAGTCAATCTGCAGTGTTCAAAACAACCCCTACGATGAGACGTACTGTCACACCCCCTCCCGGACTATCCTCCATAACCCGAAAAGAGATGTGAAGACAACAGTTACCGACTACCCTATCACATAA

Protein sequence

MTYSQAEDILDRISSNTNEWVDDGYVFRSTDRRQMQAGMLEADAATNLSAQMRTMTSLLKTALNNQGRSVVVMNAVNSIAFVRCPQCGAGHLYDMCPYNIQSICSVQNNPYDETYCHTPSRTILHNPKRDVKTTVTDYPIT
Homology
[Close]
BLAST of Cla011605 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.0e-12
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1 

Query: 2   TYSQAEDILDRISSNTNEWVDDGYVFRSTDRRQMQAGMLEADAATNLSAQMRTMTSLLKT 61
           +Y++A +IL+ I+SN  +W +     R+   R++ AG+LE DA T L+AQM +MT++LK 
Sbjct: 211 SYNEAFEILETIASNNYQWSNT----RAPTSRKV-AGVLEVDAITALTAQMASMTNVLKN 270

Query: 62  ALNNQGRSVVVMNAVNSIAFVRCPQCGAGHLYDMCPYNIQSICSVQNNPYDETYCHTPSR 121
                 +++    A+ S   V C  CG GH+++ CP N +S+C + N    ET  H+ + 
Sbjct: 271 LSIGNAKNIQPAAAIQSDD-VSCVFCGEGHVFEKCPSNPESVCYMGNQNLTETMGHSQTL 328

Query: 122 TILH 126
           TI H
Sbjct: 331 TIKH 328

[Close]
BLAST of Cla011605 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1 

Query: 2   TYSQAEDILDRISSNTNEWVDDGYVFRSTDRRQMQAGMLEADAATNLSAQMRTMTSLLKT 61
           +Y++A +IL+ I+SN  +W +     R+   R++ AG+LE DA T L+AQM +MT++LK 
Sbjct: 211 SYNEAFEILETIASNNYQWSNT----RAPTSRKV-AGVLEVDAITALTAQMASMTNVLKN 270

Query: 62  ALNNQGRSVVVMNAVNSIAFVRCPQCGAGHLYDMCPYNIQSICSVQNNPYDETYCHTPSR 121
                 +++    A+ S   V C  CG GH+++ CP N +S+C + N    ET  H+ + 
Sbjct: 271 LSIGNAKNIQPAAAIQSDD-VSCVFCGEGHVFEKCPSNPESVCYMGNQNLTETMGHSQTL 328

Query: 122 TILH 126
           TI H
Sbjct: 331 TIKH 328

The following BLAST results are available for this feature:
BLAST of Cla011605 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC9.0e-1236.29Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
BLAST of Cla011605 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548830333|gb|ERM93404.1|1.3e-1136.29hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011605Cla011605.1mRNA