Cla011527 (gene) Watermelon (97103) v1

Overview
NameCla011527
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAT-hook DNA-binding protein (Fragment) (AHRD V1 *--- A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding
LocationChr1 : 3398184 .. 3399095 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCTAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTACGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGTTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA

mRNA sequence

ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCTAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTACGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGTTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA

Coding sequence (CDS)

ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCTAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTACGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGTTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA

Protein sequence

MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY
Homology
[Close]
BLAST of Cla011527 vs. Swiss-Prot
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-94
Identity = 189/318 (59.43%), Postives = 221/318 (69.50%), Query Frame = 1 

Query: 3   SHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTR-----LKRDRD---DDDHHTN- 62
           S SLPPPF +RD HL PH    +     ++ H     +     LKRDRD   D + H++ 
Sbjct: 5   SRSLPPPFLSRDLHLHPHHQFQHQQQQQQQNHGHDIDQHRIGGLKRDRDADIDPNEHSSA 64

Query: 63  ---NSNPNSAGD-GVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVT 122
               S P S G+ G  G  D  ITRRPRGRPAGSKNKPKPPIIITRDSANAL++HV+EV 
Sbjct: 65  GKDQSTPGSGGESGGGGGGDNHITRRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVA 124

Query: 123 DGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPAS-PG---AIVNLHGRFEILSLA 182
           +GCD+++SV  FARRRQRG+C++SG G VTNVT+RQPAS PG   ++VNLHGRFEILSL+
Sbjct: 125 NGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLS 184

Query: 183 GSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLED 242
           GSFLPPPAPPAA+ LTIYLAGGQGQVVGGSVVG L+ASGPVVIMAASF NAAYERLPLE+
Sbjct: 185 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEE 244

Query: 243 DDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNS 302
           DDQ    +      I     +G     QT    Q QQQQQL+ D  +    GLPPNL+NS
Sbjct: 245 DDQEEQTAGAVANNIDGNATMGGGTQTQT--QTQQQQQQQLMQDPTS-FIQGLPPNLMNS 304

Query: 303 IQMPPSEAAYWATARPPY 304
           +Q+P    AYW T RP +
Sbjct: 305 VQLPAE--AYWGTPRPSF 317

[Close]
BLAST of Cla011527 vs. Swiss-Prot
Match: AHL24_ARATH (AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana GN=AHL24 PE=2 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.3e-93
Identity = 190/328 (57.93%), Postives = 227/328 (69.21%), Query Frame = 1 

Query: 5   SLPPPFHTRDF--HLQP---------HQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTN 64
           SLPPPFH RDF  HLQ          HQ   N  +  ++  S    ++K DR++   + +
Sbjct: 12  SLPPPFHARDFQLHLQQQQQEFFLHHHQQQRNQTDGDQQGGSGGNRQIKMDREETSDNID 71

Query: 65  NSNPNS------------AGDGVPGST-DGEITRRPRGRPAGSKNKPKPPIIITRDSANA 124
           N   NS            +G+G  GS  D ++TRRPRGRPAGSKNKPKPPIIITRDSANA
Sbjct: 72  NIANNSGSEGKDIDIHGGSGEGGGGSGGDHQMTRRPRGRPAGSKNKPKPPIIITRDSANA 131

Query: 125 LRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPA---SPGAIVNLHG 184
           LRTHV+E+ DGCD+V+SVATFARRRQRGVC+MSGTG VTNVT+RQP    SPG++V+LHG
Sbjct: 132 LRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHG 191

Query: 185 RFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAA 244
           RFEILSL+GSFLPPPAPP AT L++YLAGGQGQVVGGSVVG L+ +GPVV+MAASFSNAA
Sbjct: 192 RFEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAA 251

Query: 245 YERLPLEDDD-QPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFH 304
           YERLPLE+D+ Q P+    GGG + SP  +G          QQ Q QQQ +S        
Sbjct: 252 YERLPLEEDEMQTPVHGGGGGGSLESPPMMG----------QQLQHQQQAMSG-----HQ 311

[Close]
BLAST of Cla011527 vs. Swiss-Prot
Match: AHL26_ARATH (AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana GN=AHL26 PE=2 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.5e-92
Identity = 192/345 (55.65%), Postives = 225/345 (65.22%), Query Frame = 1 

Query: 5   SLPPPFHTRDF---------HLQPHQ----------FHNNNNNNSEEEH-----STTTTR 64
           SLPPPFH RDF         H Q HQ           H     N +++H     S     
Sbjct: 12  SLPPPFHARDFQLHLQQQQQHQQQHQQQQQQQFFLHHHQQPQRNLDQDHEQQGGSILNRS 71

Query: 65  LKRDRDD-DDHHTNNSNPNSAGDGVPGSTDG------------EITRRPRGRPAGSKNKP 124
           +K DR++  D+  N +N NS  +G   S  G            ++TRRPRGRPAGSKNKP
Sbjct: 72  IKMDREETSDNMDNIANTNSGSEGKEMSLHGGEGGSGGGGSGEQMTRRPRGRPAGSKNKP 131

Query: 125 KPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPA 184
           K PIIITRDSANALRTHV+E+ DGCDIVD +ATFARRRQRGVC+MSGTG+VTNVT+RQP 
Sbjct: 132 KAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPG 191

Query: 185 S-PGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPV 244
           S PG++V+LHGRFEILSL+GSFLPPPAPPAAT L++YLAGGQGQVVGGSVVG L+ SGPV
Sbjct: 192 SPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPV 251

Query: 245 VIMAASFSNAAYERLPLEDDD-QPPLP----SLQGGGGIGSPDEVGQSQTAQTAHHQQNQ 304
           V+MAASFSNAAYERLPLE+D+ Q P+        GGGG+GSP  +GQ Q        Q  
Sbjct: 252 VVMAASFSNAAYERLPLEEDEMQTPVQGGGGGGGGGGGMGSPPMMGQQQAMAAMAAAQ-- 311

[Close]
BLAST of Cla011527 vs. Swiss-Prot
Match: AHL18_ARATH (AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana GN=AHL18 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.8e-72
Identity = 150/293 (51.19%), Postives = 186/293 (63.48%), Query Frame = 1 

Query: 11  HTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDG 70
           HT  F    HQ +++ N            R KR R+++    NN   + A    P   + 
Sbjct: 8   HTPQFLSSDHQHYHHQNAG----------RQKRGREEEGVEPNNIGEDLAT--FPSGEEN 67

Query: 71  EITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVC 130
              RRPRGRPAGSKNKPK PII+TRDSANA R HV+E+T+ CD+++S+A FARRRQRGVC
Sbjct: 68  IKKRRPRGRPAGSKNKPKAPIIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVC 127

Query: 131 IMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQ 190
           +++G G VTNVT+RQP   G +V+LHGRFEILSL+GSFLPPPAPPAA+ L +YLAGGQGQ
Sbjct: 128 VLTGNGAVTNVTVRQPG--GGVVSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQ 187

Query: 191 VVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQ 250
           V+GGSVVG L AS PVV+MAASF NA+YERLPLE++                 +E  +  
Sbjct: 188 VIGGSVVGPLTASSPVVVMAASFGNASYERLPLEEE-----------------EETEREI 247

Query: 251 TAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 304
               A     Q Q+QL+ D  A  F G P NL+NS+ +P    AYW T RP +
Sbjct: 248 DGNAARAIGTQTQKQLMQD--ATSFIGSPSNLINSVSLPGE--AYWGTQRPSF 265

[Close]
BLAST of Cla011527 vs. Swiss-Prot
Match: AHL23_ARATH (AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana GN=AHL23 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-70
Identity = 137/254 (53.94%), Postives = 173/254 (68.11%), Query Frame = 1 

Query: 11  HTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDG 70
           H  D HL  +   ++    +   H T         DD+D++ N+   + A  G  GS+ G
Sbjct: 18  HRPDLHLHHNSSSDDVTPGAGMGHFTV--------DDEDNNNNHQGLDLASGGGSGSSGG 77

Query: 71  E---------ITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATF 130
                     + RRPRGRP GSKNKPKPP+IITR+SAN LR H++EVT+GCD+ D VAT+
Sbjct: 78  GGGHGGGGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNGCDVFDCVATY 137

Query: 131 ARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLT 190
           ARRRQRG+C++SG+GTVTNV++RQP++ GA+V L G FEILSL+GSFLPPPAPP AT+LT
Sbjct: 138 ARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLT 197

Query: 191 IYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPP----------- 244
           I+LAGGQGQVVGGSVVG L A+GPV+++AASF+N AYERLPLE+D+Q             
Sbjct: 198 IFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQLGGGSNGGGN 257

[Close]
BLAST of Cla011527 vs. TrEMBL
Match: A0A0A0KKQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157420 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 7.6e-157
Identity = 286/309 (92.56%), Postives = 289/309 (93.53%), Query Frame = 1 

Query: 1   MDSHSLPPPFHTRDFHLQPHQFHNN-NNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNS 60
           MDSHSLPPPFHTRDFHLQ H FH N NNNNSEEEHSTTTTRLKRDRDDD   TNNSNPNS
Sbjct: 1   MDSHSLPPPFHTRDFHLQQHPFHTNTNNNNSEEEHSTTTTRLKRDRDDD---TNNSNPNS 60

Query: 61  AGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA 120
           AGD  P   DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA
Sbjct: 61  AGDPTP---DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA 120

Query: 121 TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT 180
           TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT
Sbjct: 121 TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT 180

Query: 181 LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGG 240
           LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLE+DDQP LPSLQGGGG
Sbjct: 181 LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQLPSLQGGGG 240

Query: 241 IGSPDEVGQSQ-TAQTAHHQQ----NQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAA 300
           IGSPDEVGQSQ TAQTAHHQQ     QQQQQLL+DGNAPLFHGLPPNLLNSIQMPPSE+ 
Sbjct: 241 IGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESP 300

Query: 301 YWATARPPY 304
           YWATARPPY
Sbjct: 301 YWATARPPY 303

[Close]
BLAST of Cla011527 vs. TrEMBL
Match: F6HUL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g05100 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 3.4e-117
Identity = 226/305 (74.10%), Postives = 248/305 (81.31%), Query Frame = 1 

Query: 4   HSLPPPFHTRDFHL---QPHQFHNNNNNNSEEEHSTTTTRL--KRDRDDDDHHTNNSNPN 63
           HSLPPPFHTRD HL   Q HQFH    N+ +E+  ++      KRDRDD++ +TN  +  
Sbjct: 9   HSLPPPFHTRDLHLHHQQQHQFHPQQQNSEDEQSGSSGLNRGQKRDRDDNNENTNGGSEG 68

Query: 64  SAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSV 123
           +   G+ G  DGEI+RRPRGRPAGSKNKPKPPIIITRDSANALRTHV+E+ DGCDIV+SV
Sbjct: 69  NEMVGLSG--DGEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESV 128

Query: 124 ATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAAT 183
           ATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIV LHGRFEILSL+GSFLPPPAPPAAT
Sbjct: 129 ATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLSGSFLPPPAPPAAT 188

Query: 184 TLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGG 243
            LTIYLAGGQGQVVGGSVVG L+ASGPVVIMAASFSNAAYERLPLE++D P LP    GG
Sbjct: 189 GLTIYLAGGQGQVVGGSVVGQLLASGPVVIMAASFSNAAYERLPLEEED-PALP--MPGG 248

Query: 244 GIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWAT 303
            +GSP  VGQ Q  Q    QQ QQ QQLL+D NAPLFHGLPPNLLNSIQ+P    AYWAT
Sbjct: 249 SLGSPGGVGQHQPPQ----QQPQQPQQLLADPNAPLFHGLPPNLLNSIQLPAE--AYWAT 302

[Close]
BLAST of Cla011527 vs. TrEMBL
Match: B9GKT4_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0001s08190g PE=4 SV=2)

HSP 1 Score: 420.6 bits (1080), Expect = 1.6e-114
Identity = 222/307 (72.31%), Postives = 243/307 (79.15%), Query Frame = 1 

Query: 4   HSLPPPFHTRDFHL-----QPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPN 63
           HSLPPPFHTRDF L     Q HQFH+    NSE+E S +++ L +    +   +NNS  N
Sbjct: 9   HSLPPPFHTRDFQLHHQQQQQHQFHHQQQQNSEDEQSGSSSGLNKSLKRERDESNNSMGN 68

Query: 64  SAGDGV--PGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVD 123
             G  +   G  DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTH++EV DGCDIV+
Sbjct: 69  REGQELITSGDGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHLMEVADGCDIVE 128

Query: 124 SVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPA 183
           SVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIV LHGRFEILSLAGSFLPPPAPPA
Sbjct: 129 SVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAGSFLPPPAPPA 188

Query: 184 ATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQG 243
           AT LTIYLAGGQGQVVGGSVVGTL ASGPVVIMAASFSNAAYERLPLE++D P +P    
Sbjct: 189 ATGLTIYLAGGQGQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEEED-PQMP--MQ 248

Query: 244 GGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYW 303
           GGG+GSP  VGQ         QQ  QQ Q++++ NA LFHGLPPNLLNSIQ+P    AYW
Sbjct: 249 GGGMGSPGGVGQ--------QQQQPQQHQVMAEQNAQLFHGLPPNLLNSIQLPAE--AYW 302

[Close]
BLAST of Cla011527 vs. TrEMBL
Match: B9GVU3_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0003s11680g PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 2.7e-114
Identity = 226/312 (72.44%), Postives = 249/312 (79.81%), Query Frame = 1 

Query: 4   HSLPPPFHTRDFHL------QPHQFHNNNNNNSEEEHSTTTT----RLKRDRDDDDHHTN 63
           HSLPPPFHTRDF L      Q HQFH+    NSE+E S +++     LKR+RD++    N
Sbjct: 9   HSLPPPFHTRDFQLHHHQQQQQHQFHHQQQQNSEDEQSGSSSGLNKSLKRERDEN----N 68

Query: 64  NSNPNSAGDGV--PGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDG 123
           NS  NS G  +   GS +GEITRRPRGRP+GSKNKPKPPIIITRDSANALRTH++EV DG
Sbjct: 69  NSMGNSEGKELITSGSGEGEITRRPRGRPSGSKNKPKPPIIITRDSANALRTHLMEVADG 128

Query: 124 CDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPP 183
           CDIV+SVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIV LHGRFEILSLAGSFLPP
Sbjct: 129 CDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAGSFLPP 188

Query: 184 PAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPL 243
           PAPPAAT LTIYLAGGQGQVVGGSVVGTL ASGPVVIMAASFSNAAYERLPLE++D P +
Sbjct: 189 PAPPAATGLTIYLAGGQGQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEEED-PQM 248

Query: 244 PSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPS 303
           P    GG +GSP  VGQ         QQ  QQQQ++++ NA LFHGLPPNLLNSIQ+P  
Sbjct: 249 P--MQGGEMGSPGAVGQ--------QQQQPQQQQVMAEQNAQLFHGLPPNLLNSIQLPAE 303

[Close]
BLAST of Cla011527 vs. TrEMBL
Match: A0A061G3R8_THECC (AT-hook DNA-binding family protein OS=Theobroma cacao GN=TCM_016102 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 6.7e-113
Identity = 222/310 (71.61%), Postives = 249/310 (80.32%), Query Frame = 1 

Query: 5   SLPPPFHTRDFHL-------QPHQFHNNNNNNSEEEHSTTTTRL-KRDRDDDDHHTNNSN 64
           SLPPPF+ RDF+L       Q HQFH+ N   SE+E S +++ L KRDRDD ++  N+S+
Sbjct: 10  SLPPPFNIRDFNLHHQQQQQQEHQFHHQN---SEDEQSGSSSGLRKRDRDDSNNINNSSS 69

Query: 65  PNSAGDG---VPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCD 124
            N+        PGS +GEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHV+E+ DGCD
Sbjct: 70  ANNNEGNELSFPGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIGDGCD 129

Query: 125 IVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPA 184
           IV+SVATFARRRQRGVCIMSGTGTVTNVTLRQPAS GAIV LHGRFEILSLAGSFLPPPA
Sbjct: 130 IVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASAGAIVTLHGRFEILSLAGSFLPPPA 189

Query: 185 PPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPS 244
           PPAAT LTIYLAGGQGQVVGGSVVGTLI SGPVVIMAASFSNAAYERLPLE+++Q P+  
Sbjct: 190 PPAATGLTIYLAGGQGQVVGGSVVGTLICSGPVVIMAASFSNAAYERLPLEEEEQLPMQ- 249

Query: 245 LQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEA 304
              GG IGSP  +G          QQ QQQQQ+L++ NAPLFHGLPPNLLNSIQ+P    
Sbjct: 250 ---GGAIGSPGAIG--------GQQQQQQQQQVLAESNAPLFHGLPPNLLNSIQLPTE-- 302

[Close]
BLAST of Cla011527 vs. NCBI nr
Match: gi|659073628|ref|XP_008437165.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 563.9 bits (1452), Expect = 1.7e-157
Identity = 286/309 (92.56%), Postives = 290/309 (93.85%), Query Frame = 1 

Query: 1   MDSHSLPPPFHTRDFHLQPHQFHNN-NNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNS 60
           MDSHSLPPPFHTRDFHLQ H FH N NNNNSEEEHSTTTTRLKRDRDDD   TNNSNPNS
Sbjct: 1   MDSHSLPPPFHTRDFHLQQHPFHTNTNNNNSEEEHSTTTTRLKRDRDDD---TNNSNPNS 60

Query: 61  AGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA 120
           AGD  P   DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA
Sbjct: 61  AGDPTP---DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA 120

Query: 121 TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT 180
           TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAI+NLHGRFEILSLAGSFLPPPAPPAATT
Sbjct: 121 TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIINLHGRFEILSLAGSFLPPPAPPAATT 180

Query: 181 LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGG 240
           LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLE+DDQPPLPSLQGGGG
Sbjct: 181 LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPPLPSLQGGGG 240

Query: 241 IGSPDEVGQSQ-TAQTAHHQQ----NQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAA 300
           IGSPDEVGQSQ TAQTAHHQQ     QQQQQLL+DGNAPLFHGLPPNLLNSIQMPPSE+ 
Sbjct: 241 IGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESP 300

Query: 301 YWATARPPY 304
           YWATARPPY
Sbjct: 301 YWATARPPY 303

[Close]
BLAST of Cla011527 vs. NCBI nr
Match: gi|778699867|ref|XP_004147565.2| (PREDICTED: AT-hook motif nuclear-localized protein 22 [Cucumis sativus])

HSP 1 Score: 561.2 bits (1445), Expect = 1.1e-156
Identity = 286/309 (92.56%), Postives = 289/309 (93.53%), Query Frame = 1 

Query: 1   MDSHSLPPPFHTRDFHLQPHQFHNN-NNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNS 60
           MDSHSLPPPFHTRDFHLQ H FH N NNNNSEEEHSTTTTRLKRDRDDD   TNNSNPNS
Sbjct: 1   MDSHSLPPPFHTRDFHLQQHPFHTNTNNNNSEEEHSTTTTRLKRDRDDD---TNNSNPNS 60

Query: 61  AGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA 120
           AGD  P   DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA
Sbjct: 61  AGDPTP---DGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVA 120

Query: 121 TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT 180
           TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT
Sbjct: 121 TFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATT 180

Query: 181 LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGG 240
           LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLE+DDQP LPSLQGGGG
Sbjct: 181 LTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQLPSLQGGGG 240

Query: 241 IGSPDEVGQSQ-TAQTAHHQQ----NQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAA 300
           IGSPDEVGQSQ TAQTAHHQQ     QQQQQLL+DGNAPLFHGLPPNLLNSIQMPPSE+ 
Sbjct: 241 IGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESP 300

Query: 301 YWATARPPY 304
           YWATARPPY
Sbjct: 301 YWATARPPY 303

[Close]
BLAST of Cla011527 vs. NCBI nr
Match: gi|225426655|ref|XP_002281296.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera])

HSP 1 Score: 429.5 bits (1103), Expect = 4.9e-117
Identity = 226/305 (74.10%), Postives = 248/305 (81.31%), Query Frame = 1 

Query: 4   HSLPPPFHTRDFHL---QPHQFHNNNNNNSEEEHSTTTTRL--KRDRDDDDHHTNNSNPN 63
           HSLPPPFHTRD HL   Q HQFH    N+ +E+  ++      KRDRDD++ +TN  +  
Sbjct: 9   HSLPPPFHTRDLHLHHQQQHQFHPQQQNSEDEQSGSSGLNRGQKRDRDDNNENTNGGSEG 68

Query: 64  SAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSV 123
           +   G+ G  DGEI+RRPRGRPAGSKNKPKPPIIITRDSANALRTHV+E+ DGCDIV+SV
Sbjct: 69  NEMVGLSG--DGEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESV 128

Query: 124 ATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAAT 183
           ATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIV LHGRFEILSL+GSFLPPPAPPAAT
Sbjct: 129 ATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLSGSFLPPPAPPAAT 188

Query: 184 TLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGG 243
            LTIYLAGGQGQVVGGSVVG L+ASGPVVIMAASFSNAAYERLPLE++D P LP    GG
Sbjct: 189 GLTIYLAGGQGQVVGGSVVGQLLASGPVVIMAASFSNAAYERLPLEEED-PALP--MPGG 248

Query: 244 GIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWAT 303
            +GSP  VGQ Q  Q    QQ QQ QQLL+D NAPLFHGLPPNLLNSIQ+P    AYWAT
Sbjct: 249 SLGSPGGVGQHQPPQ----QQPQQPQQLLADPNAPLFHGLPPNLLNSIQLPAE--AYWAT 302

[Close]
BLAST of Cla011527 vs. NCBI nr
Match: gi|645266574|ref|XP_008238673.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume])

HSP 1 Score: 428.7 bits (1101), Expect = 8.4e-117
Identity = 231/318 (72.64%), Postives = 254/318 (79.87%), Query Frame = 1 

Query: 1   MDSHSLPPPFHTRDFHLQPH-QFHNNNNNNSEEEHSTTT----TRLKRDRDDDDHHTNNS 60
           MD+HSLPPPFHTRDFHLQ H QFH+    NSE+E + ++       KR+RD D    N+S
Sbjct: 1   MDTHSLPPPFHTRDFHLQHHPQFHHQQQQNSEDEQTGSSGLNNKGQKRERDID----NDS 60

Query: 61  NPNSAGDG------VPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVT 120
             N    G      + G    E+TRRPRGRPAGSKNKPKPPIIITRDSANALRTHV+E+ 
Sbjct: 61  GGNGGDLGKELNVTISGGDGSEMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIA 120

Query: 121 DGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFL 180
           DGCDIV+SVATFARRRQRGVCIMSGTGTVTNVT+RQPASPG+IV LHGRFEILSLAGSFL
Sbjct: 121 DGCDIVESVATFARRRQRGVCIMSGTGTVTNVTIRQPASPGSIVTLHGRFEILSLAGSFL 180

Query: 181 PPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQP 240
           PPPAPPAAT LTIYLAGG GQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLE +D+ 
Sbjct: 181 PPPAPPAATGLTIYLAGGGGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLE-EDEG 240

Query: 241 PLPSLQGGGG-IGSPDEVGQSQTAQTAHHQQNQQQQQLLSDG---NAPLFHGLPPNLLNS 300
            LP   GGGG +GSP  VG  Q  Q   HQQ QQQQQLL++    NAPLFHGLPPNLLNS
Sbjct: 241 QLPMQGGGGGSLGSPSGVGHQQQQQ---HQQQQQQQQLLAEAANTNAPLFHGLPPNLLNS 300

Query: 301 IQMPPSEAAYWATARPPY 304
           +Q+ P+EAAYWAT RPPY
Sbjct: 301 MQL-PAEAAYWATGRPPY 309

[Close]
BLAST of Cla011527 vs. NCBI nr
Match: gi|470125443|ref|XP_004298711.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Fragaria vesca subsp. vesca])

HSP 1 Score: 421.0 bits (1081), Expect = 1.8e-114
Identity = 222/320 (69.38%), Postives = 255/320 (79.69%), Query Frame = 1 

Query: 1   MDSHSLPPPFHTRDFHLQP--------HQFHNNNNNNSEEEHSTTT----TRLKRDRDDD 60
           MD+HSLPPPFHTRDF L          HQFH+   N+ +E+  ++     T+ +RD D++
Sbjct: 1   MDAHSLPPPFHTRDFQLHHQQQQQQHHHQFHHQQQNSEDEQTGSSGLNKGTKRERDIDNN 60

Query: 61  DHHTNNSNPNSAGDGVPGSTDG-EITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIE 120
           ++ + N    S    +  S DG E+TRRPRGRPAGSKNKPKPPIIITRDSANALRTHV+E
Sbjct: 61  NNDSGNGGEGSKELNITVSGDGSEMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVME 120

Query: 121 VTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGS 180
           + DGCDIV+SVATFARRRQRGVCIMSGTGTVTNVTLRQPA+PG++V LHGRFEILSLAGS
Sbjct: 121 IADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPATPGSVVTLHGRFEILSLAGS 180

Query: 181 FLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDD 240
           FLPPPAPPAAT LTIYLAGGQGQVVGGSVVGTL+ASGPVVIMAASFSNAAYERLPLE+D+
Sbjct: 181 FLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLLASGPVVIMAASFSNAAYERLPLEEDE 240

Query: 241 -QPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDG---NAPLFHGLPPNLL 300
              P+P    GG +GSP  VGQ Q      HQQ QQQQQLL++    NAPLFHGLPPNLL
Sbjct: 241 GSMPMP----GGSMGSPTAVGQQQ------HQQQQQQQQLLAEAANTNAPLFHGLPPNLL 300

Query: 301 NSIQMPPSEAAYWATARPPY 304
           NS+Q+ P+EAAYWAT RPP+
Sbjct: 301 NSMQL-PAEAAYWATGRPPF 309

The following BLAST results are available for this feature:
BLAST of Cla011527 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AHL22_ARATH1.5e-9459.43AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1... [more]
AHL24_ARATH1.3e-9357.93AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana GN=AHL24 PE=2... [more]
AHL26_ARATH2.5e-9255.65AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana GN=AHL26 PE=2... [more]
AHL18_ARATH2.8e-7251.19AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana GN=AHL18 PE=2... [more]
AHL23_ARATH1.6e-7053.94AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana GN=AHL23 PE=1... [more]
BLAST of Cla011527 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKQ4_CUCSA7.6e-15792.56Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157420 PE=4 SV=1[more]
F6HUL1_VITVI3.4e-11774.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g05100 PE=4 SV=... [more]
B9GKT4_POPTR1.6e-11472.31DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0001s08190g PE=4 SV=2[more]
B9GVU3_POPTR2.7e-11472.44DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0003s11680g PE=4 SV=1[more]
A0A061G3R8_THECC6.7e-11371.61AT-hook DNA-binding family protein OS=Theobroma cacao GN=TCM_016102 PE=4 SV=1[more]
BLAST of Cla011527 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073628|ref|XP_008437165.1|1.7e-15792.56PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo][more]
gi|778699867|ref|XP_004147565.2|1.1e-15692.56PREDICTED: AT-hook motif nuclear-localized protein 22 [Cucumis sativus][more]
gi|225426655|ref|XP_002281296.1|4.9e-11774.10PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera][more]
gi|645266574|ref|XP_008238673.1|8.4e-11772.64PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume][more]
gi|470125443|ref|XP_004298711.1|1.8e-11469.38PREDICTED: putative DNA-binding protein ESCAROLA [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005175PPC_dom
IPR014476AT-hook_nuclear
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009908 flower development
biological_process GO:0009640 photomorphogenesis
biological_process GO:0009647 skotomorphogenesis
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003680 AT DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0042826 histone deacetylase binding
molecular_function GO:0043621 protein self-association
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011527Cla011527.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005175PPC domainPFAMPF03479DUF296coord: 102..214
score: 5.8
IPR005175PPC domainPROFILEPS51742PPCcoord: 98..237
score: 4
IPR014476AT-hook motif nuclear-localised proteinPIRPIRSF016021ESCAROLAcoord: 12..303
score: 4.1E
NoneNo IPR availableGENE3DG3DSA:3.30.1330.80coord: 101..227
score: 8.9
NoneNo IPR availablePANTHERPTHR31100FAMILY NOT NAMEDcoord: 1..303
score: 9.3E
NoneNo IPR availablePANTHERPTHR31100:SF15AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 24-RELATEDcoord: 1..303
score: 9.3E
NoneNo IPR availableunknownSSF117856AF0104/ALDC/Ptd012-likecoord: 98..229
score: 5.23

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla011527Cla97C01G003600Watermelon (97103) v2wmwmbB235
Cla011527Csa5G157420Cucumber (Chinese Long) v2cuwmB408
Cla011527MELO3C005593Melon (DHL92) v3.5.1mewmB029
Cla011527ClCG01G003510Watermelon (Charleston Gray)wcgwmB142
Cla011527CSPI03G09480Wild cucumber (PI 183967)cpiwmB259
Cla011527CSPI05G06210Wild cucumber (PI 183967)cpiwmB416
Cla011527Cucsa.302400Cucumber (Gy14) v1cgywmB552
Cla011527CmaCh02G015130Cucurbita maxima (Rimu)cmawmB577
Cla011527CmaCh15G011750Cucurbita maxima (Rimu)cmawmB277
Cla011527CmoCh06G011550Cucurbita moschata (Rifu)cmowmB796
Cla011527CmoCh02G015540Cucurbita moschata (Rifu)cmowmB563
Cla011527CmoCh15G012360Cucurbita moschata (Rifu)cmowmB267
Cla011527Lsi09G003650Bottle gourd (USVL1VR-Ls)lsiwmB027
Cla011527Lsi05G019680Bottle gourd (USVL1VR-Ls)lsiwmB377
Cla011527Cp4.1LG05g02610Cucurbita pepo (Zucchini)cpewmB712
Cla011527Cp4.1LG13g01990Cucurbita pepo (Zucchini)cpewmB183
Cla011527CsGy5G003540Cucumber (Gy14) v2cgybwmB381
Cla011527CsGy3G009550Cucumber (Gy14) v2cgybwmB244
Cla011527MELO3C005593.2Melon (DHL92) v3.6.1medwmB027
Cla011527Carg02473Silver-seed gourdcarwmB0923
Cla011527Carg16680Silver-seed gourdcarwmB0938
Cla011527Carg23902Silver-seed gourdcarwmB0484
Cla011527CsaV3_3G009600Cucumber (Chinese Long) v3cucwmB269
Cla011527CsaV3_5G003610Cucumber (Chinese Long) v3cucwmB433
Cla011527Bhi12G000335Wax gourdwgowmB077
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla011527Cla021299Watermelon (97103) v1wmwmB123
The following block(s) are covering this gene:
GeneOrganismBlock
Cla011527Melon (DHL92) v3.6.1medwmB466
Cla011527Melon (DHL92) v3.6.1medwmB467
Cla011527Melon (DHL92) v3.6.1medwmB469
Cla011527Silver-seed gourdcarwmB0618
Cla011527Silver-seed gourdcarwmB0868
Cla011527Cucumber (Chinese Long) v3cucwmB271
Cla011527Cucumber (Chinese Long) v3cucwmB273
Cla011527Watermelon (97103) v2wmwmbB254
Cla011527Watermelon (97103) v2wmwmbB265
Cla011527Watermelon (97103) v2wmwmbB269
Cla011527Wax gourdwgowmB231
Cla011527Watermelon (97103) v1wmwmB049
Cla011527Watermelon (97103) v1wmwmB126
Cla011527Cucumber (Gy14) v1cgywmB480
Cla011527Cucumber (Gy14) v1cgywmB482
Cla011527Cucumber (Gy14) v1cgywmB588
Cla011527Cucurbita maxima (Rimu)cmawmB568
Cla011527Cucurbita maxima (Rimu)cmawmB805
Cla011527Cucurbita moschata (Rifu)cmowmB235
Cla011527Cucurbita moschata (Rifu)cmowmB571
Cla011527Cucurbita moschata (Rifu)cmowmB795
Cla011527Melon (DHL92) v3.5.1mewmB477
Cla011527Melon (DHL92) v3.5.1mewmB479
Cla011527Melon (DHL92) v3.5.1mewmB481
Cla011527Watermelon (Charleston Gray)wcgwmB071
Cla011527Watermelon (Charleston Gray)wcgwmB301
Cla011527Cucumber (Chinese Long) v2cuwmB262
Cla011527Cucumber (Chinese Long) v2cuwmB263
Cla011527Cucurbita pepo (Zucchini)cpewmB036
Cla011527Cucurbita pepo (Zucchini)cpewmB617
Cla011527Cucurbita pepo (Zucchini)cpewmB846
Cla011527Cucurbita pepo (Zucchini)cpewmB847
Cla011527Bottle gourd (USVL1VR-Ls)lsiwmB373
Cla011527Bottle gourd (USVL1VR-Ls)lsiwmB454
Cla011527Cucumber (Gy14) v2cgybwmB248
Cla011527Cucumber (Gy14) v2cgybwmB246