Cla011466 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011466
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LURP-one-related 3 protein (AHRD V1 ***- F4HTE5_ARATH); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567
Location	Chr1 : 2720298 .. 2721069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCTGATTCAAAGGCAGAAACTTTCACTCTATGGATGAAGTCTCTTATCATGCAAGGAAATGGTCTTACTGTTTTCAATGGAAATGGTCAGATTGCGTTTCGCATCGACAATTATGATGAGAAGAGCAGCAGGGAAGTTTTTCTGATGGATCTTAGAGGGAAACTTCTCTTTACGTTGTGTCGAAAGGTGGGTTTCAATGAACAAGGACTGAATATTATTGTGTACAATTGATGTATTTGTATTGTTTTCCCTCATTGGTTATTTTTGGTTTCCTTTGGCAGAGTATCTGTTTTTTGTGTGATTGGGAAGGATTTAAAGAGGATGGTGATGTAAATGCAGAGGAAAGAAAGCCATTCTTTAGAGTGAAAAAGGTTCTCAGATGTTTCAGTAAAAAGTTGAGCTGTAATGTAAAATTATGTGGAGATGAATCTCAGGAAAGTTTGTGCTATAGGTTCGAAGGGTTGTGGGGTAAAACAACATTTAGAATACTAGACAGCCGTGGAAGACTTGTTGCAGAGGTAAGTCCTTTTGTTTCGAACTAAAATGCCACAACTTTTGATATCCAACTTCCACCAAAGTGCTAATAAAAAGTGATGAAATGAATTAATTGGCATTTGGGTTTGTGCAGGCAAAGAGAAAGCAATCATCTTTAGGAGTTCAATTGGGAAAAGATGTTCTGAGTTTGGTCCTAGTACAGACTAATTTAGATCATTCCCTTCTCATGGCTCTTGTGACTGTGTACCTATTGATTCAACACAGAATATGA

mRNA sequence

ATGACAGCTGATTCAAAGGCAGAAACTTTCACTCTATGGATGAAGTCTCTTATCATGCAAGGAAATGGTCTTACTGTTTTCAATGGAAATGGTCAGATTGCGTTTCGCATCGACAATTATGATGAGAAGAGCAGCAGGGAAGTTTTTCTGATGGATCTTAGAGGGAAACTTCTCTTTACGTTGTGTCGAAAGAGTATCTGTTTTTTGTGTGATTGGGAAGGATTTAAAGAGGATGGTGATGTAAATGCAGAGGAAAGAAAGCCATTCTTTAGAGTGAAAAAGGTTCTCAGATGTTTCAGTAAAAAGTTGAGCTGTAATGTAAAATTATGTGGAGATGAATCTCAGGAAAGTTTGTGCTATAGGTTCGAAGGGTTGTGGGGTAAAACAACATTTAGAATACTAGACAGCCGTGGAAGACTTGTTGCAGAGGCAAAGAGAAAGCAATCATCTTTAGGAGTTCAATTGGGAAAAGATGTTCTGAGTTTGGTCCTAGTACAGACTAATTTAGATCATTCCCTTCTCATGGCTCTTGTGACTGTGTACCTATTGATTCAACACAGAATATGA

Coding sequence (CDS)

ATGACAGCTGATTCAAAGGCAGAAACTTTCACTCTATGGATGAAGTCTCTTATCATGCAAGGAAATGGTCTTACTGTTTTCAATGGAAATGGTCAGATTGCGTTTCGCATCGACAATTATGATGAGAAGAGCAGCAGGGAAGTTTTTCTGATGGATCTTAGAGGGAAACTTCTCTTTACGTTGTGTCGAAAGAGTATCTGTTTTTTGTGTGATTGGGAAGGATTTAAAGAGGATGGTGATGTAAATGCAGAGGAAAGAAAGCCATTCTTTAGAGTGAAAAAGGTTCTCAGATGTTTCAGTAAAAAGTTGAGCTGTAATGTAAAATTATGTGGAGATGAATCTCAGGAAAGTTTGTGCTATAGGTTCGAAGGGTTGTGGGGTAAAACAACATTTAGAATACTAGACAGCCGTGGAAGACTTGTTGCAGAGGCAAAGAGAAAGCAATCATCTTTAGGAGTTCAATTGGGAAAAGATGTTCTGAGTTTGGTCCTAGTACAGACTAATTTAGATCATTCCCTTCTCATGGCTCTTGTGACTGTGTACCTATTGATTCAACACAGAATATGA

Protein sequence

MTADSKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCYRFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTVYLLIQHRI

Homology

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BLAST of Cla011466 vs. Swiss-Prot
Match: LOR4_ARATH (Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-30
Identity = 77/182 (42.31%), Postives = 114/182 (62.64%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRK 64
           ++ ETFT+WMKSL+ Q NGLTV+N NG+I +R++NYD K S EV +MDL G +LFT+ +K
Sbjct: 17  TERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-KCSNEVHIMDLHGNILFTIRKK 76

Query: 65  SICFLCDWEGFKEDGD-VNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCYRFE 124
            +     W  ++E G   + EE KP  R+K+     S     + ++  + ++     RF+
Sbjct: 77  KLWLFGSWYVYRECGSFTSTEEVKPCARIKR-----SSIRDGDWEVRDETNEVFWILRFD 136

Query: 125 GLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTVYLL 184
               K  F+I+D  G ++A+ K KQSS G+ LG+DVL+L  V+  +DHSL++ LVTVY L
Sbjct: 137 ---PKFAFQIIDIHGNIIAQVKPKQSSNGITLGEDVLTLE-VKPRVDHSLVVTLVTVYGL 188

Query: 185 IQ 186
           I+
Sbjct: 197 IK 188

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BLAST of Cla011466 vs. Swiss-Prot
Match: LOR11_ARATH (Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.0e-29
Identity = 71/182 (39.01%), Postives = 111/182 (60.99%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRK 64
           ++ E+FT+WMKSL+   NG TVF+  G I +R+DNY+ KS REV+LMDL G +LFTL R+
Sbjct: 46  TEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYNSKSCREVYLMDLSGHVLFTLRRQ 105

Query: 65  SICFLCDWEGFK-EDGDVNAEERKPFFRVK-KVLRCFSKKLSCNVKLCGDESQESLCYRF 124
                  WEG++     V +  +  +FRVK  V +  +K  S + ++     +    Y +
Sbjct: 106 KFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVPNKDSSSSYRVNAGSCRNDEQYCY 165

Query: 125 EGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTVYL 184
           + +   ++  I D+ G+L+AE KRKQS  G++LG DVL++ +V++ +DHS ++ LV  + 
Sbjct: 166 KMVTRGSSLAIEDNCGKLLAEVKRKQSINGLKLGDDVLTM-MVESQVDHSFIIGLVLAHS 225

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BLAST of Cla011466 vs. Swiss-Prot
Match: LOR2_ARATH (Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-28
Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKS-SREVFLMDLRGKLLFTLCR 64
           ++ E FT+WMKSL+    G TVF+  G + +R+DNYD KS S EV+ MDL GK+LFTL +
Sbjct: 39  TEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLRQ 98

Query: 65  KSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKL-----CGDESQESL 124
           K + F   WEG+   G          FR++K+ +   ++ S + K+       D  Q+S 
Sbjct: 99  KKLGFFKSWEGYNSTG--------TRFRLRKIFKILPRESSSSYKVVMGSRIVDGDQQS- 158

Query: 125 CYRFEGLWGKTTFRILDSRGRLVAEAKRKQSSL-GVQLGKDVLSLVLVQTNLDHSLLMAL 184
           CY+       + F I D  GRL+AE K K S + G+ LG DVL++ +V+  LDHSL+M +
Sbjct: 159 CYKIVN--RGSVFAIKDGSGRLMAEVKNKLSDISGLDLGDDVLTM-MVEPQLDHSLIMGI 217

Query: 185 VTVYLLIQHRI 189
           V  Y L + ++
Sbjct: 219 VIAYKLTKCKL 217

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BLAST of Cla011466 vs. Swiss-Prot
Match: LOR3_ARATH (Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-28
Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKS-SREVFLMDLRGKLLFTLCR 64
           ++ E FT+WMKSL+    G TVF+  G + +R+DNYD KS S EV+ MDL GK+LFTL +
Sbjct: 39  TEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLRQ 98

Query: 65  KSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKL-----CGDESQESL 124
           K + F   WEG+   G          FR++K+ +   ++ S + K+       D  Q+S 
Sbjct: 99  KKLGFFKSWEGYNSTG--------TRFRLRKIFKILPRESSSSYKVVMGSRIVDGDQQS- 158

Query: 125 CYRFEGLWGKTTFRILDSRGRLVAEAKRKQSSL-GVQLGKDVLSLVLVQTNLDHSLLMAL 184
           CY+       + F I D  GRL+AE K K S + G+ LG DVL++ +V+  LDHSL+M +
Sbjct: 159 CYKIVN--RGSVFAIKDGSGRLMAEVKNKLSDISGLDLGDDVLTM-MVEPQLDHSLIMGI 217

Query: 185 VTVYLLIQHRI 189
           V  Y L + ++
Sbjct: 219 VIAYKLTKCKL 217

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BLAST of Cla011466 vs. Swiss-Prot
Match: LOR8_ARATH (Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 62/181 (34.25%), Postives = 96/181 (53.04%), Query Frame = 1


Query: 4   DSKAET-FTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLC 63
           DSKA    T+W KSL+   +G TV+N NG++ FR+DNY       + LMD  G  L ++ 
Sbjct: 18  DSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPRDNIVLMDASGFPLLSIR 77

Query: 64  RKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCYRF 123
           RK +     W  +  DG+    ER P F  +K +   S + S    L    +++++ Y  
Sbjct: 78  RKKLSLGDCWMVY--DGET---ERDPIFTARKNVSIISNRKS----LAWVSAKKTVLYEI 137

Query: 124 EGLWGKTTFRILDSR--GRLVAEAKRKQSSL-GVQLGKDVLSLVLVQTNLDHSLLMALVT 181
           EG +G+ + +ILD R   +  AE KRK++ + GV  GKDV  L+ V++ ++  + MAL  
Sbjct: 138 EGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLI-VESEMEPRVAMALTI 188

[Close]

BLAST of Cla011466 vs. TrEMBL
Match: A0A0A0KKK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154800 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.7e-86
Identity = 165/188 (87.77%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 1   MTADSKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFT 60
           MTADSKAETFTLWMKSLIMQGNGLTVFN NGQI FRIDNYDEKSSREV LMDL G+LLFT
Sbjct: 40  MTADSKAETFTLWMKSLIMQGNGLTVFNENGQIVFRIDNYDEKSSREVSLMDLGGRLLFT 99

Query: 61  LCRKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCY 120
           L RKSI F+CDWEGFKEDG+VN EERKPFFRVKKVL  FSKKLSC+VK  GDES  SLCY
Sbjct: 100 LRRKSIWFVCDWEGFKEDGNVNNEERKPFFRVKKVLGFFSKKLSCDVKFYGDESPASLCY 159

Query: 121 RFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTV 180
           RFEGLWGKTTFRILD+RG +VAEAKRKQSS+GV LG+DVLSLVLVQTNLDHSLLMALVTV
Sbjct: 160 RFEGLWGKTTFRILDNRGGVVAEAKRKQSSIGVLLGEDVLSLVLVQTNLDHSLLMALVTV 219

Query: 181 YLLIQHRI 189
           YLLIQHRI
Sbjct: 220 YLLIQHRI 227

[Close]

BLAST of Cla011466 vs. TrEMBL
Match: W9QPQ3_9ROSA (Protein LURP-one-related 11 OS=Morus notabilis GN=L484_024310 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-48
Identity = 106/188 (56.38%), Postives = 141/188 (75.00%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRK 64
           SK ETFT+WMKSL+MQGNG T +N NG+I +R+DNYD+K+S EV+LMDL+GK+LFT+ RK
Sbjct: 31  SKRETFTVWMKSLVMQGNGCTAYNENGEIVYRVDNYDQKNSNEVYLMDLKGKVLFTILRK 90

Query: 65  SICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRC-FSKKLSCNVKLCGDESQ--ESL-CY 124
            I     WEG+K +G +++   KPFF+V+K       K  SC V L  ++    E+L CY
Sbjct: 91  KIGVFRRWEGYKSNG-LDSNNDKPFFQVRKSCSVNLGKDFSCKVTLRSNDMNNFEALSCY 150

Query: 125 RFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTV 184
           + EG  GK+  RI+D++GRLVAEAKRKQSS GV LG DVL+LV+ Q N+DHSL+MAL+TV
Sbjct: 151 KLEGSPGKSALRIIDNQGRLVAEAKRKQSSSGVILGDDVLTLVIEQ-NVDHSLVMALMTV 210

Query: 185 YLLIQHRI 189
           Y L+QH++
Sbjct: 211 YGLMQHKM 216

[Close]

BLAST of Cla011466 vs. TrEMBL
Match: D7TW17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03750 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-46
Identity = 99/184 (53.80%), Postives = 137/184 (74.46%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRK 64
           SK E FT+WMKSL++QGNG TVFN +G+I +RIDNYD+K S EV+LMDL+GK+LFT+ ++
Sbjct: 24  SKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYDKKCSSEVYLMDLQGKVLFTILQR 83

Query: 65  SICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCYRFEG 124
            +     WEG+K +G      +KP+F+V+K  R      SC V +  +E+Q S CYR +G
Sbjct: 84  KLRVFGRWEGYKSNGS-KGNNQKPWFQVRKNCRILGGGSSCQVTVRPNEAQ-SYCYRIQG 143

Query: 125 LWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTVYLLI 184
           L GK+ F+I+DS+G L+AE ++KQ+S GV LG+DVL+LV V+ ++DHSL+MALV VY LI
Sbjct: 144 LTGKSAFKIVDSQGGLLAEVEQKQTSSGVVLGEDVLNLV-VEPHVDHSLVMALVAVYGLI 203

Query: 185 QHRI 189
            HRI
Sbjct: 204 HHRI 204

[Close]

BLAST of Cla011466 vs. TrEMBL
Match: M5WNK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012092mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-46
Identity = 106/185 (57.30%), Postives = 131/185 (70.81%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRK 64
           SK ETFT+WMKSL+MQGNG T F+ +G+I +RIDNYD K S EV+LMDLRGKLLFT+C K
Sbjct: 3   SKRETFTIWMKSLVMQGNGCTAFDESGEIVYRIDNYDNKHSDEVYLMDLRGKLLFTVCEK 62

Query: 65  SICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCYRFEG 124
            +C    WEG+K +  V A   +P FRV+K  R       C  K+    S+ S  Y+ E 
Sbjct: 63  KMCGFLSWEGYKSNTIVGA--NRPMFRVRKSCRAILGNNECFYKV-SMGSETSCSYKLEA 122

Query: 125 LWGKTT-FRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTVYLL 184
           L GK++ FRI DS G  VAEAKRKQSS GV LG DVLSLV V+ ++DHSL+MALVTVY L
Sbjct: 123 LGGKSSAFRITDSNGGFVAEAKRKQSSSGVVLGDDVLSLV-VEAHVDHSLIMALVTVYGL 182

Query: 185 IQHRI 189
           I+H++
Sbjct: 183 IRHQL 183

[Close]

BLAST of Cla011466 vs. TrEMBL
Match: B9GKJ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09160g PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.8e-46
Identity = 96/185 (51.89%), Postives = 134/185 (72.43%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKS-SREVFLMDLRGKLLFTLCR 64
           SK ETFT+WMKSL+MQ NG TVFN NG+I +R+DNYD+K+ S EV+LMDL+G +LFT+ R
Sbjct: 24  SKPETFTIWMKSLLMQTNGCTVFNKNGEIVYRVDNYDKKAGSNEVYLMDLKGNVLFTILR 83

Query: 65  KSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCYRFE 124
           + +     W+G+K DG +  + ++P+F+VK+    F   LSC + +   ++QES  Y+ E
Sbjct: 84  RKLFLFRQWKGYKSDG-LKLKTQEPYFQVKRRSEIFEGDLSCQITVRSSDAQESCSYKLE 143

Query: 125 GLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTVYLL 184
            L GK  F+I +S G +VAEAKRK+SS GV LG DVL+LV V+ + DHS +MALVTVY L
Sbjct: 144 ALSGKLAFKITNSNGEIVAEAKRKRSSKGVLLGDDVLTLV-VEPHTDHSFIMALVTVYGL 203

Query: 185 IQHRI 189
           + H++
Sbjct: 204 MHHKL 206

[Close]

BLAST of Cla011466 vs. NCBI nr
Match: gi|700194941|gb|KGN50118.1| (hypothetical protein Csa_5G154800 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 8.1e-86
Identity = 165/188 (87.77%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 1   MTADSKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFT 60
           MTADSKAETFTLWMKSLIMQGNGLTVFN NGQI FRIDNYDEKSSREV LMDL G+LLFT
Sbjct: 40  MTADSKAETFTLWMKSLIMQGNGLTVFNENGQIVFRIDNYDEKSSREVSLMDLGGRLLFT 99

Query: 61  LCRKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCY 120
           L RKSI F+CDWEGFKEDG+VN EERKPFFRVKKVL  FSKKLSC+VK  GDES  SLCY
Sbjct: 100 LRRKSIWFVCDWEGFKEDGNVNNEERKPFFRVKKVLGFFSKKLSCDVKFYGDESPASLCY 159

Query: 121 RFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTV 180
           RFEGLWGKTTFRILD+RG +VAEAKRKQSS+GV LG+DVLSLVLVQTNLDHSLLMALVTV
Sbjct: 160 RFEGLWGKTTFRILDNRGGVVAEAKRKQSSIGVLLGEDVLSLVLVQTNLDHSLLMALVTV 219

Query: 181 YLLIQHRI 189
           YLLIQHRI
Sbjct: 220 YLLIQHRI 227

[Close]

BLAST of Cla011466 vs. NCBI nr
Match: gi|778699700|ref|XP_004143985.2| (PREDICTED: protein LURP-one-related 4-like [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 8.1e-86
Identity = 165/188 (87.77%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 1   MTADSKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFT 60
           MTADSKAETFTLWMKSLIMQGNGLTVFN NGQI FRIDNYDEKSSREV LMDL G+LLFT
Sbjct: 42  MTADSKAETFTLWMKSLIMQGNGLTVFNENGQIVFRIDNYDEKSSREVSLMDLGGRLLFT 101

Query: 61  LCRKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCY 120
           L RKSI F+CDWEGFKEDG+VN EERKPFFRVKKVL  FSKKLSC+VK  GDES  SLCY
Sbjct: 102 LRRKSIWFVCDWEGFKEDGNVNNEERKPFFRVKKVLGFFSKKLSCDVKFYGDESPASLCY 161

Query: 121 RFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTV 180
           RFEGLWGKTTFRILD+RG +VAEAKRKQSS+GV LG+DVLSLVLVQTNLDHSLLMALVTV
Sbjct: 162 RFEGLWGKTTFRILDNRGGVVAEAKRKQSSIGVLLGEDVLSLVLVQTNLDHSLLMALVTV 221

Query: 181 YLLIQHRI 189
           YLLIQHRI
Sbjct: 222 YLLIQHRI 229

[Close]

BLAST of Cla011466 vs. NCBI nr
Match: gi|659073769|ref|XP_008437243.1| (PREDICTED: protein LURP-one-related 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 7.6e-84
Identity = 164/188 (87.23%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 1   MTADSKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFT 60
           MTADS+AETFTLWMKSLIMQGNGLTVFNGNGQI FRIDNYDEKS REV LMDL G+LLFT
Sbjct: 42  MTADSEAETFTLWMKSLIMQGNGLTVFNGNGQIVFRIDNYDEKSRREVSLMDLGGRLLFT 101

Query: 61  LCRKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCY 120
           L RKSI F+CDWEGFKEDG+VN EERKPFFRVKKVL  FS+KLSC+VK  GDESQ SLCY
Sbjct: 102 LRRKSIWFVCDWEGFKEDGNVNTEERKPFFRVKKVLG-FSRKLSCDVKFYGDESQASLCY 161

Query: 121 RFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTV 180
           RFEGL GKTTFRILD+RG LVAEAKRKQSS+GV LG+DVLSLVLVQTNLDHSLLMALVTV
Sbjct: 162 RFEGLRGKTTFRILDNRGGLVAEAKRKQSSIGVLLGEDVLSLVLVQTNLDHSLLMALVTV 221

Query: 181 YLLIQHRI 189
           YLLIQHRI
Sbjct: 222 YLLIQHRI 228

[Close]

BLAST of Cla011466 vs. NCBI nr
Match: gi|659073771|ref|XP_008437244.1| (PREDICTED: protein LURP-one-related 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-60
Identity = 122/143 (85.31%), Postives = 129/143 (90.21%), Query Frame = 1


Query: 1   MTADSKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFT 60
           MTADS+AETFTLWMKSLIMQGNGLTVFNGNGQI FRIDNYDEKS REV LMDL G+LLFT
Sbjct: 42  MTADSEAETFTLWMKSLIMQGNGLTVFNGNGQIVFRIDNYDEKSRREVSLMDLGGRLLFT 101

Query: 61  LCRKSICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRCFSKKLSCNVKLCGDESQESLCY 120
           L RKSI F+CDWEGFKEDG+VN EERKPFFRVKKVL  FS+KLSC+VK  GDESQ SLCY
Sbjct: 102 LRRKSIWFVCDWEGFKEDGNVNTEERKPFFRVKKVLG-FSRKLSCDVKFYGDESQASLCY 161

Query: 121 RFEGLWGKTTFRILDSRGRLVAE 144
           RFEGL GKTTFRILD+RG LVAE
Sbjct: 162 RFEGLRGKTTFRILDNRGGLVAE 183

[Close]

BLAST of Cla011466 vs. NCBI nr
Match: gi|703071861|ref|XP_010089135.1| (Protein LURP-one-related 11 [Morus notabilis])

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-48
Identity = 106/188 (56.38%), Postives = 141/188 (75.00%), Query Frame = 1


Query: 5   SKAETFTLWMKSLIMQGNGLTVFNGNGQIAFRIDNYDEKSSREVFLMDLRGKLLFTLCRK 64
           SK ETFT+WMKSL+MQGNG T +N NG+I +R+DNYD+K+S EV+LMDL+GK+LFT+ RK
Sbjct: 31  SKRETFTVWMKSLVMQGNGCTAYNENGEIVYRVDNYDQKNSNEVYLMDLKGKVLFTILRK 90

Query: 65  SICFLCDWEGFKEDGDVNAEERKPFFRVKKVLRC-FSKKLSCNVKLCGDESQ--ESL-CY 124
            I     WEG+K +G +++   KPFF+V+K       K  SC V L  ++    E+L CY
Sbjct: 91  KIGVFRRWEGYKSNG-LDSNNDKPFFQVRKSCSVNLGKDFSCKVTLRSNDMNNFEALSCY 150

Query: 125 RFEGLWGKTTFRILDSRGRLVAEAKRKQSSLGVQLGKDVLSLVLVQTNLDHSLLMALVTV 184
           + EG  GK+  RI+D++GRLVAEAKRKQSS GV LG DVL+LV+ Q N+DHSL+MAL+TV
Sbjct: 151 KLEGSPGKSALRIIDNQGRLVAEAKRKQSSSGVILGDDVLTLVIEQ-NVDHSLVMALMTV 210

Query: 185 YLLIQHRI 189
           Y L+QH++
Sbjct: 211 YGLMQHKM 216

The following BLAST results are available for this feature:

BLAST of Cla011466 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LOR4_ARATH	4.8e-30	42.31	Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1	[more]
LOR11_ARATH	7.0e-29	39.01	Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1	[more]
LOR2_ARATH	3.5e-28	39.27	Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870 PE=2 SV=2	[more]
LOR3_ARATH	3.5e-28	39.27	Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2	[more]
LOR8_ARATH	1.6e-17	34.25	Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1	[more]

BLAST of Cla011466 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKK6_CUCSA	5.7e-86	87.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154800 PE=4 SV=1	[more]
W9QPQ3_9ROSA	2.7e-48	56.38	Protein LURP-one-related 11 OS=Morus notabilis GN=L484_024310 PE=4 SV=1	[more]
D7TW17_VITVI	2.0e-46	53.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03750 PE=4 SV=...	[more]
M5WNK2_PRUPE	2.0e-46	57.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012092mg PE=4 SV=1	[more]
B9GKJ7_POPTR	9.8e-46	51.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09160g PE=4 SV=1	[more]

BLAST of Cla011466 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194941\|gb\|KGN50118.1\|	8.1e-86	87.77	hypothetical protein Csa_5G154800 [Cucumis sativus]	[more]
gi\|778699700\|ref\|XP_004143985.2\|	8.1e-86	87.77	PREDICTED: protein LURP-one-related 4-like [Cucumis sativus]	[more]
gi\|659073769\|ref\|XP_008437243.1\|	7.6e-84	87.23	PREDICTED: protein LURP-one-related 4-like isoform X1 [Cucumis melo]	[more]
gi\|659073771\|ref\|XP_008437244.1\|	1.2e-60	85.31	PREDICTED: protein LURP-one-related 4-like isoform X2 [Cucumis melo]	[more]
gi\|703071861\|ref\|XP_010089135.1\|	3.9e-48	56.38	Protein LURP-one-related 11 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007612	LOR
IPR025659	Tubby-like_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU71974	watermelon EST collection version 2.0	transcribed_cluster
WMU73388	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011466	Cla011466.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU73388	WMU73388	transcribed_cluster
WMU71974	WMU71974	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007612	LURP1-related protein domain	PFAM	PF04525	LOR	coord: 5..180 score: 2.2
IPR025659	Tubby C-terminal-like domain	unknown	SSF54518	Tubby C-terminal domain-like	coord: 5..181 score: 2.88
None	No IPR available	PANTHER	PTHR31087	FAMILY NOT NAMED	coord: 3..188 score: 7.2
None	No IPR available	PANTHER	PTHR31087:SF25	PROTEIN LURP-ONE-RELATED 4	coord: 3..188 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011466	Cucurbita maxima (Rimu)	cmawmB277
Cla011466	Cucurbita maxima (Rimu)	cmawmB320
Cla011466	Cucurbita maxima (Rimu)	cmawmB568
Cla011466	Cucurbita moschata (Rifu)	cmowmB267
Cla011466	Cucurbita moschata (Rifu)	cmowmB314
Cla011466	Cucurbita moschata (Rifu)	cmowmB563
Cla011466	Melon (DHL92) v3.5.1	mewmB029
Cla011466	Watermelon (Charleston Gray)	wcgwmB142
Cla011466	Cucumber (Chinese Long) v2	cuwmB408
Cla011466	Cucurbita pepo (Zucchini)	cpewmB036
Cla011466	Cucurbita pepo (Zucchini)	cpewmB183
Cla011466	Cucurbita pepo (Zucchini)	cpewmB717
Cla011466	Bottle gourd (USVL1VR-Ls)	lsiwmB027
Cla011466	Bottle gourd (USVL1VR-Ls)	lsiwmB373
Cla011466	Cucumber (Gy14) v2	cgybwmB246
Cla011466	Cucumber (Gy14) v2	cgybwmB381
Cla011466	Melon (DHL92) v3.6.1	medwmB027
Cla011466	Melon (DHL92) v3.6.1	medwmB467
Cla011466	Silver-seed gourd	carwmB0925
Cla011466	Silver-seed gourd	carwmB0938
Cla011466	Cucumber (Chinese Long) v3	cucwmB271
Cla011466	Cucumber (Chinese Long) v3	cucwmB433
Cla011466	Watermelon (97103) v2	wmwmbB235
Cla011466	Watermelon (97103) v2	wmwmbB269
Cla011466	Wax gourd	wgowmB084
Cla011466	Wax gourd	wgowmB224
Cla011466	Watermelon (97103) v1	wmwmB126
Cla011466	Cucumber (Gy14) v1	cgywmB552