Cla011415 (gene) Watermelon (97103) v1

NameCla011415
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHeavy-metal-associated domain-containing protein (AHRD V1 *-** O03982_ARATH); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein
LocationChr1 : 2119627 .. 2120583 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGAGAGAATTAATTATTTCCCCTCTCAGCTTTCCCCTCTTTCCCNNNCTTTCCCTTTTCTTCTTTTCTTCATATTTATCTCTCTTTCAGTCTTTTAAGGTCACACATATATATATATATTTTCTAAAATTTCTTTCAAGATATATATGATGTGGGTTTTTAGGTTTAATTTCCAACTATGAACTACTAATGGGTTTCATTTAAAATCTGCAGAAAGTTGTGGTGAAAGTTGAAATAAGTGATGCAAAGACAAAGAGAAAGGTGTTGGGTGCTGTTTCTGCCCTTTTAGGTAACCTCAACAAACTCCCTCTTTCTAAATTATAAAAGAAATTTAAAAAAATTAGTAAATAAATACTTTACTTTATTTAAATAAATTAAAATGTTCATTATTTATATTATATTTCTATTTTATTATTTATTTTTTTCAATGATTCATAGATTTTTTTTAATGATATAATGAAAATGTCAATTCATCTCATCTCAGGTCGATATCGACATTTTATTGATATATCTGTCAACATTTTCGTAAAATTGAAATCTTGATATTTTCATCGATATGACATTTTAAATCTTAGAGATAGACCTAAATATATATTTTTCATATATATGGGCGATATATTGATGTGGGTTTTGGTAAAAATTAAATTTGTAGGCATTGTATCAATGACAGCAGACACAAAAGAGAACAAAATTACAGTGATTGGAACTACAGACCCAATTAAGATTGTTGAGAAAGTAAGAAAGATTTTGCCCTCAGCTTACATTGTTAGTGTTGGACTAGACAAAGAAGAAGCAAAGAAAGAAGAGACAAAGAAAGAAGAATCACAACCCAAAATTGAGCAAATTGATTGGGTTAAGGCTTACACCACCTTCCATTCTTACCCCACAACTCATTACTATCATCCAATATGTCAAGAACAATACAATCCAAATGGTTGTGTTATCTCTTGA

mRNA sequence

ATGATGAAAGTTGTGGTGAAAGTTGAAATAAGTGATGCAAAGACAAAGAGAAAGGTGTTGGGTGCTGTTTCTGCCCTTTTAGGCATTGTATCAATGACAGCAGACACAAAAGAGAACAAAATTACAGTGATTGGAACTACAGACCCAATTAAGATTGTTGAGAAAGTAAGAAAGATTTTGCCCTCAGCTTACATTGTTAGTGTTGGACTAGACAAAGAAGAAGCAAAGAAAGAAGAGACAAAGAAAGAAGAATCACAACCCAAAATTGAGCAAATTGATTGGGTTAAGGCTTACACCACCTTCCATTCTTACCCCACAACTCATTACTATCATCCAATATGTCAAGAACAATACAATCCAAATGGTTGTGTTATCTCTTGA

Coding sequence (CDS)

ATGATGAAAGTTGTGGTGAAAGTTGAAATAAGTGATGCAAAGACAAAGAGAAAGGTGTTGGGTGCTGTTTCTGCCCTTTTAGGCATTGTATCAATGACAGCAGACACAAAAGAGAACAAAATTACAGTGATTGGAACTACAGACCCAATTAAGATTGTTGAGAAAGTAAGAAAGATTTTGCCCTCAGCTTACATTGTTAGTGTTGGACTAGACAAAGAAGAAGCAAAGAAAGAAGAGACAAAGAAAGAAGAATCACAACCCAAAATTGAGCAAATTGATTGGGTTAAGGCTTACACCACCTTCCATTCTTACCCCACAACTCATTACTATCATCCAATATGTCAAGAACAATACAATCCAAATGGTTGTGTTATCTCTTGA

Protein sequence

MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKILPSAYIVSVGLDKEEAKKEETKKEESQPKIEQIDWVKAYTTFHSYPTTHYYHPICQEQYNPNGCVIS
BLAST of Cla011415 vs. TrEMBL
Match: A0A0A0KNU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152270 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-33
Identity = 79/107 (73.83%), Postives = 89/107 (83.18%), Query Frame = 1

Query: 12  DAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKILPSAYIVSVGLD 71
           D KTK+KVLGAVS LLG+VSM A+  ENKITVIGTTDPIKIV+KVRK+ P A I+SVG +
Sbjct: 3   DLKTKKKVLGAVSGLLGVVSMAAE--ENKITVIGTTDPIKIVKKVRKVWPCANIISVGQE 62

Query: 72  KEEAKKEETKKEESQPKIEQIDWVKAYTTFHSYPTTHYYHPICQEQY 119
           KE+AKKE     ESQPKIEQIDW KAYTTF+SYPTTHYY+P  QE Y
Sbjct: 63  KEDAKKE-----ESQPKIEQIDWDKAYTTFYSYPTTHYYYPY-QEPY 101

BLAST of Cla011415 vs. TrEMBL
Match: A0A0B2QFV6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_045333 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           M K V+K+++ D K K+K L  VS L GI ++  D KE K+TVIGT DP+ +V K+RK  
Sbjct: 1   MKKFVLKLDLHDDKDKQKALKTVSTLSGIDAIAMDMKEKKLTVIGTVDPVTVVSKLRKNW 60

Query: 61  PSAYIVSV--------------------GLDKEEAKKEETKKEESQ--------PKIEQ- 120
             A IV+V                    G  KEE KKEE KKEE +        P +   
Sbjct: 61  -KADIVAVGPVKEPEKKEDPKKVEAKKEGEKKEEGKKEEGKKEEKKEDEKKKDPPPVPDP 120

Query: 121 -IDWVKAYTTFHSYPTTHYYHPICQEQYNPNGCVI 126
            ++WVKAY  ++ Y TTHYY P  +E  NPN CVI
Sbjct: 121 VLEWVKAYRAYNPYMTTHYYAPSMEE--NPNACVI 152

BLAST of Cla011415 vs. TrEMBL
Match: C6TB20_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G032400 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           M K V+K+++ D K K+K L  VS L GI ++  D KE K+TVIGT DP+ +V K+RK  
Sbjct: 1   MKKFVLKLDLHDDKDKQKALKTVSTLSGIDAIAMDMKEKKLTVIGTVDPVTVVSKLRKNW 60

Query: 61  PSAYIVSV--------------------GLDKEEAKKEETKKEESQ--------PKIEQ- 120
             A IV+V                    G  KEE KKEE KKEE +        P +   
Sbjct: 61  -KADIVAVGPVKEPEKKEDPKKVEAKKEGEKKEEGKKEEGKKEEKKEDEKKKDPPPVPDP 120

Query: 121 -IDWVKAYTTFHSYPTTHYYHPICQEQYNPNGCVI 126
            ++WVKAY  ++ Y TTHYY P  +E  NPN CVI
Sbjct: 121 VLEWVKAYRAYNPYMTTHYYAPSMEE--NPNACVI 152

BLAST of Cla011415 vs. TrEMBL
Match: I3SAI5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-18
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           M KVV+KVE+ D K K+K + AV  L G+ S++ D KE K+T+IG  DP+K+V K+RK L
Sbjct: 1   MKKVVLKVELYDDKIKKKAMKAVFGLSGVESVSVDVKEQKMTLIGDIDPVKVVGKLRK-L 60

Query: 61  PSAYIVSVGLDKEEAKKEETKKEESQ--------PKIEQIDWVKAYTTFHS---YPTTHY 120
             A I+SVG  KEE KK+E KKEE +        PK E  + V+AY  ++S    P  +Y
Sbjct: 61  CHADILSVGPAKEE-KKDEKKKEEGKKPVEKKKDPKEEMAEIVRAYENYYSQMRQPNPYY 120

Query: 121 YHPICQEQYNPNGCVI 126
           Y+   +E  +PNGCVI
Sbjct: 121 YYRTVEE--DPNGCVI 132

BLAST of Cla011415 vs. TrEMBL
Match: K7L019_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G065800 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 63/152 (41.45%), Postives = 84/152 (55.26%), Query Frame = 1

Query: 2   MKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKILP 61
           MK V+K+++ D K K+K L  VS L GI ++  D KE K+TVIGT DP+ +V K+RK   
Sbjct: 1   MKFVLKLDLHDDKDKQKALKTVSTLSGIDAIAMDMKEKKLTVIGTVDPVTVVSKLRKYW- 60

Query: 62  SAYIVSV--------------------GLDKEEAKKEETKKEESQPKIEQ--------ID 121
            A IV+V                    G  KEE KKEE KKEE +   ++        ++
Sbjct: 61  KADIVAVGPVKEPEKKEDPKKAEAKKEGEKKEEGKKEEGKKEEKKEDDKKKEPAPDPVLE 120

Query: 122 WVKAYTTFHSYPTTHYYHPICQEQYNPNGCVI 126
           WVKAY  ++ Y TT+YY P  +E  NPN CVI
Sbjct: 121 WVKAYRAYNPYMTTNYYAPSMEE--NPNACVI 149

BLAST of Cla011415 vs. NCBI nr
Match: gi|778699503|ref|XP_011654722.1| (PREDICTED: uncharacterized protein LOC105435437 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 86/118 (72.88%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           MMKVV+ VE+ D KTK+KVLGAVS LLG+VSM A+  ENKITVIGTTDPIKIV+KVRK+ 
Sbjct: 1   MMKVVLNVEMRDLKTKKKVLGAVSGLLGVVSMAAE--ENKITVIGTTDPIKIVKKVRKVW 60

Query: 61  PSAYIVSVGLDKEEAKKEETKKEESQPKIEQIDWVKAYTTFHSYPTTHYYHPICQEQY 119
           P A I+SVG +KE+AKKE     ESQPKIEQIDW KAYTTF+SYPTTHYY+P  QE Y
Sbjct: 61  PCANIISVGQEKEDAKKE-----ESQPKIEQIDWDKAYTTFYSYPTTHYYYPY-QEPY 110

BLAST of Cla011415 vs. NCBI nr
Match: gi|659073933|ref|XP_008437330.1| (PREDICTED: uncharacterized protein LOC103482783 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 82/118 (69.49%), Postives = 99/118 (83.90%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           MMKVV+ VE+ D+KTK+KVLGAVS LLG+VS+   T+ENKITVIGTTDPIKIV+KVRK+ 
Sbjct: 1   MMKVVLNVEMRDSKTKKKVLGAVSGLLGVVSVA--TEENKITVIGTTDPIKIVKKVRKVW 60

Query: 61  PSAYIVSVGLDKEEAKKEETKKEESQPKIEQIDWVKAYTTFHSYPTTHYYHPICQEQY 119
           P+A I+SVG +KE+AKKE     ESQPKIEQIDW KAYTTF+SYPT+HYY+P  +  Y
Sbjct: 61  PTANIISVGQEKEDAKKE-----ESQPKIEQIDWAKAYTTFYSYPTSHYYYPYQERLY 111

BLAST of Cla011415 vs. NCBI nr
Match: gi|778699506|ref|XP_011654723.1| (PREDICTED: uncharacterized protein LOC105435438 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           MMKV + VE+ D KTK+KVLGA+S LLG+V+M A+  ENKITVIGT DPIKI +KVRK+ 
Sbjct: 1   MMKVELNVEMRDLKTKKKVLGAISGLLGVVAMAAE--ENKITVIGTADPIKICKKVRKVW 60

Query: 61  PSAYIVSVGLDKEEAKKEETKKEESQPKIEQIDWVKAYTTFHSYPTTHYYHPICQEQY 119
           P A I+SVG +KE AKKE  KKEESQP IEQIDW KAYTTF+SYPT+HYY+P  +  Y
Sbjct: 61  PCANIISVGQEKEAAKKEVAKKEESQPTIEQIDWAKAYTTFYSYPTSHYYYPYQEPPY 116

BLAST of Cla011415 vs. NCBI nr
Match: gi|700194885|gb|KGN50062.1| (hypothetical protein Csa_5G152270 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 7.0e-33
Identity = 79/107 (73.83%), Postives = 89/107 (83.18%), Query Frame = 1

Query: 12  DAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKILPSAYIVSVGLD 71
           D KTK+KVLGAVS LLG+VSM A+  ENKITVIGTTDPIKIV+KVRK+ P A I+SVG +
Sbjct: 3   DLKTKKKVLGAVSGLLGVVSMAAE--ENKITVIGTTDPIKIVKKVRKVWPCANIISVGQE 62

Query: 72  KEEAKKEETKKEESQPKIEQIDWVKAYTTFHSYPTTHYYHPICQEQY 119
           KE+AKKE     ESQPKIEQIDW KAYTTF+SYPTTHYY+P  QE Y
Sbjct: 63  KEDAKKE-----ESQPKIEQIDWDKAYTTFYSYPTTHYYYPY-QEPY 101

BLAST of Cla011415 vs. NCBI nr
Match: gi|720074507|ref|XP_010279042.1| (PREDICTED: FK506-binding protein 4-like [Nelumbo nucifera])

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 67/133 (50.38%), Postives = 85/133 (63.91%), Query Frame = 1

Query: 1   MMKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIL 60
           M KVV+K+ + D K K+K + AVS L GI S++ D KENK+TV+G  DP++IV K+RK L
Sbjct: 1   MKKVVLKLNLHDDKAKQKAMKAVSTLQGIDSISVDMKENKLTVVGDVDPVQIVSKLRK-L 60

Query: 61  PSAYIVSVGLDKEEAKKEETKKEE---SQPKIEQID-----WVKAYTTFHSYPTTHYYHP 120
             A IVSVG  KE  KKEE KKEE    +PK E ++      VKAY  ++   TTHYY  
Sbjct: 61  SYADIVSVGPAKEPEKKEEAKKEEPKKEEPKKETVEQQIQNLVKAYQAYNPCMTTHYYAH 120

Query: 121 ICQEQYNPNGCVI 126
             +E  NPN CVI
Sbjct: 121 SAEE--NPNACVI 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KNU5_CUCSA4.9e-3373.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152270 PE=4 SV=1[more]
A0A0B2QFV6_GLYSO1.5e-1841.94Uncharacterized protein OS=Glycine soja GN=glysoja_045333 PE=4 SV=1[more]
C6TB20_SOYBN1.5e-1841.94Uncharacterized protein OS=Glycine max GN=GLYMA_16G032400 PE=2 SV=1[more]
I3SAI5_LOTJA2.0e-1846.32Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
K7L019_SOYBN2.6e-1841.45Uncharacterized protein OS=Glycine max GN=GLYMA_07G065800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778699503|ref|XP_011654722.1|1.0e-3672.88PREDICTED: uncharacterized protein LOC105435437 [Cucumis sativus][more]
gi|659073933|ref|XP_008437330.1|1.4e-3669.49PREDICTED: uncharacterized protein LOC103482783 [Cucumis melo][more]
gi|778699506|ref|XP_011654723.1|1.4e-3667.80PREDICTED: uncharacterized protein LOC105435438 [Cucumis sativus][more]
gi|700194885|gb|KGN50062.1|7.0e-3373.83hypothetical protein Csa_5G152270 [Cucumis sativus][more]
gi|720074507|ref|XP_010279042.1|2.1e-2150.38PREDICTED: FK506-binding protein 4-like [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006121HMA_dom
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011415Cla011415.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006121Heavy metal-associated domain, HMAPFAMPF00403HMAcoord: 6..59
score: 3.
IPR006121Heavy metal-associated domain, HMAunknownSSF55008HMA, heavy metal-associated domaincoord: 2..61
score: 7.9
NoneNo IPR availableGENE3DG3DSA:3.30.70.100coord: 15..59
score: 1.
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 1..125
score: 5.2
NoneNo IPR availablePANTHERPTHR22814:SF77HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEINcoord: 1..125
score: 5.2

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla011415Watermelon (97103) v1wmwmB122
Cla011415Watermelon (97103) v1wmwmB151
Cla011415Cucumber (Gy14) v1cgywmB150
Cla011415Cucumber (Gy14) v1cgywmB232
Cla011415Cucurbita maxima (Rimu)cmawmB277
Cla011415Cucurbita maxima (Rimu)cmawmB319
Cla011415Cucurbita maxima (Rimu)cmawmB347
Cla011415Cucurbita maxima (Rimu)cmawmB568
Cla011415Cucurbita maxima (Rimu)cmawmB712
Cla011415Cucurbita moschata (Rifu)cmowmB267
Cla011415Cucurbita moschata (Rifu)cmowmB313
Cla011415Cucurbita moschata (Rifu)cmowmB343
Cla011415Cucurbita moschata (Rifu)cmowmB563
Cla011415Cucurbita moschata (Rifu)cmowmB860
Cla011415Melon (DHL92) v3.5.1mewmB101
Cla011415Melon (DHL92) v3.5.1mewmB480
Cla011415Melon (DHL92) v3.5.1mewmB530
Cla011415Watermelon (Charleston Gray)wcgwmB142
Cla011415Watermelon (Charleston Gray)wcgwmB298
Cla011415Watermelon (Charleston Gray)wcgwmB337
Cla011415Cucumber (Chinese Long) v2cuwmB260
Cla011415Cucumber (Chinese Long) v2cuwmB330
Cla011415Cucumber (Chinese Long) v2cuwmB504
Cla011415Cucurbita pepo (Zucchini)cpewmB183
Cla011415Cucurbita pepo (Zucchini)cpewmB717
Cla011415Bottle gourd (USVL1VR-Ls)lsiwmB032
Cla011415Bottle gourd (USVL1VR-Ls)lsiwmB378
Cla011415Cucumber (Gy14) v2cgybwmB304
Cla011415Cucumber (Gy14) v2cgybwmB471
Cla011415Melon (DHL92) v3.6.1medwmB099
Cla011415Melon (DHL92) v3.6.1medwmB515
Cla011415Silver-seed gourdcarwmB0925
Cla011415Silver-seed gourdcarwmB0938
Cla011415Cucumber (Chinese Long) v3cucwmB270
Cla011415Cucumber (Chinese Long) v3cucwmB343
Cla011415Cucumber (Chinese Long) v3cucwmB529
Cla011415Watermelon (97103) v2wmwmbB235
Cla011415Watermelon (97103) v2wmwmbB266
Cla011415Watermelon (97103) v2wmwmbB273