Cla011322 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011322
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Glutathione synthetase (AHRD V1 **** Q6F4I7_ZINEL); contains Interpro domain(s) IPR005615 Glutathione synthase, eukaryotic
Location	Chr3 : 27642469 .. 27642660 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATATTCATGGCATCGATCAAGAGTTGCTTGAGAAGATGGTTTATGATGCTCTTGTTTGGAGCTCTCTACATGGACTTGTTGTTGGTGACAGGGCTGTGAAGGTAAGCGTTTCTGCTGTTTATAGGGTGGATGCTCTCTGCCTTTTACTTGGTTTGCAGATGTTGAAATATGTTTTTTGTCGATAG

mRNA sequence

ATGGCGGATATTCATGGCATCGATCAAGAGTTGCTTGAGAAGATGGTTTATGATGCTCTTGTTTGGAGCTCTCTACATGGACTTGTTGTTGGTGACAGGGCTGTGAAGGTAAGCGTTTCTGCTGTTTATAGGGTGGATGCTCTCTGCCTTTTACTTGGTTTGCAGATGTTGAAATATGTTTTTTGTCGATAG

Coding sequence (CDS)

ATGGCGGATATTCATGGCATCGATCAAGAGTTGCTTGAGAAGATGGTTTATGATGCTCTTGTTTGGAGCTCTCTACATGGACTTGTTGTTGGTGACAGGGCTGTGAAGGTAAGCGTTTCTGCTGTTTATAGGGTGGATGCTCTCTGCCTTTTACTTGGTTTGCAGATGTTGAAATATGTTTTTTGTCGATAG

Protein sequence

MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVSVSAVYRVDALCLLLGLQMLKYVFCR

Homology

[Close]

BLAST of Cla011322 vs. Swiss-Prot
Match: GSHB_ARATH (Glutathione synthetase, chloroplastic OS=Arabidopsis thaliana GN=GSH2 PE=2 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-06
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1


Query: 3   DIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           D+  +D E ++K+VYDALVWSSLHGLVVGD++ + S
Sbjct: 70  DLEKLDDEFVQKLVYDALVWSSLHGLVVGDKSYQKS 105

[Close]

BLAST of Cla011322 vs. TrEMBL
Match: K9JF36_CUCSA (Glutathione synthetase OS=Cucumis sativus GN=GSH2 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 1  MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
          MAD+HGID+ELL++MVYDALVWSSLHGLVVGD++VK S
Sbjct: 1  MADVHGIDRELLQEMVYDALVWSSLHGLVVGDKSVKRS 38

[Close]

BLAST of Cla011322 vs. TrEMBL
Match: A0A0A0LW32_CUCSA (Glutathione synthetase OS=Cucumis sativus GN=Csa_1G571280 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 1   MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           MAD+HGID+ELL++MVYDALVWSSLHGLVVGD++VK S
Sbjct: 76  MADVHGIDRELLQEMVYDALVWSSLHGLVVGDKSVKRS 113

[Close]

BLAST of Cla011322 vs. TrEMBL
Match: U5FUH4_POPTR (Glutathione synthetase OS=Populus trichocarpa GN=POPTR_0013s02780g PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 3   DIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           DIHGID+EL++KMVYDALVWSSLHGLVVGDR+V+ S
Sbjct: 102 DIHGIDEELVQKMVYDALVWSSLHGLVVGDRSVQRS 137

[Close]

BLAST of Cla011322 vs. TrEMBL
Match: U5GDQ3_POPTR (Glutathione synthetase OS=Populus trichocarpa GN=POPTR_0005s04040g PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-08
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 1   MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           + D HGID+EL++KMVYDALVWSSLHGLVVGD++V+ S
Sbjct: 100 LIDFHGIDEELVQKMVYDALVWSSLHGLVVGDKSVQRS 137

[Close]

BLAST of Cla011322 vs. TrEMBL
Match: M5WHF4_PRUPE (Glutathione synthetase OS=Prunus persica GN=PRUPE_ppa003677mg PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-07
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 1   MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           + D HGIDQ+L+EK+VYDALVWSSLHGLVVGD++V+ S
Sbjct: 86  LLDFHGIDQDLVEKIVYDALVWSSLHGLVVGDKSVQRS 123

[Close]

BLAST of Cla011322 vs. NCBI nr
Match: gi|659099631|ref|XP_008450698.1| (PREDICTED: glutathione synthetase, chloroplastic [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-10
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 1   MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           MAD+HGIDQELL++MVYDALVWSSLHGLVVGDR+VK S
Sbjct: 80  MADVHGIDQELLQEMVYDALVWSSLHGLVVGDRSVKRS 117

[Close]

BLAST of Cla011322 vs. NCBI nr
Match: gi|305430792|gb|ADM53349.1| (glutathione synthetase [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 1  MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
          MAD+HGID+ELL++MVYDALVWSSLHGLVVGD++VK S
Sbjct: 1  MADVHGIDRELLQEMVYDALVWSSLHGLVVGDKSVKRS 38

[Close]

BLAST of Cla011322 vs. NCBI nr
Match: gi|449435701|ref|XP_004135633.1| (PREDICTED: glutathione synthetase, chloroplastic [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 1   MADIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           MAD+HGID+ELL++MVYDALVWSSLHGLVVGD++VK S
Sbjct: 76  MADVHGIDRELLQEMVYDALVWSSLHGLVVGDKSVKRS 113

[Close]

BLAST of Cla011322 vs. NCBI nr
Match: gi|566199071|ref|XP_006375779.1| (hypothetical protein POPTR_0013s02780g [Populus trichocarpa])

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 3   DIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           DIHGID+EL++KMVYDALVWSSLHGLVVGDR+V+ S
Sbjct: 102 DIHGIDEELVQKMVYDALVWSSLHGLVVGDRSVQRS 137

[Close]

BLAST of Cla011322 vs. NCBI nr
Match: gi|743829494|ref|XP_011023533.1| (PREDICTED: glutathione synthetase, chloroplastic-like [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 3   DIHGIDQELLEKMVYDALVWSSLHGLVVGDRAVKVS 39
           DIHGID+EL++KMVYDALVWSSLHGLVVGDR+V+ S
Sbjct: 98  DIHGIDEELVQKMVYDALVWSSLHGLVVGDRSVQRS 133

The following BLAST results are available for this feature:

BLAST of Cla011322 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GSHB_ARATH	2.1e-06	61.11	Glutathione synthetase, chloroplastic OS=Arabidopsis thaliana GN=GSH2 PE=2 SV=3	[more]

BLAST of Cla011322 vs. TrEMBL


Match Name	E-value	Identity	Description
K9JF36_CUCSA	2.4e-09	81.58	Glutathione synthetase OS=Cucumis sativus GN=GSH2 PE=2 SV=1	[more]
A0A0A0LW32_CUCSA	2.4e-09	81.58	Glutathione synthetase OS=Cucumis sativus GN=Csa_1G571280 PE=3 SV=1	[more]
U5FUH4_POPTR	1.6e-08	83.33	Glutathione synthetase OS=Populus trichocarpa GN=POPTR_0013s02780g PE=3 SV=1	[more]
U5GDQ3_POPTR	7.9e-08	73.68	Glutathione synthetase OS=Populus trichocarpa GN=POPTR_0005s04040g PE=3 SV=1	[more]
M5WHF4_PRUPE	1.0e-07	73.68	Glutathione synthetase OS=Prunus persica GN=PRUPE_ppa003677mg PE=3 SV=1	[more]

BLAST of Cla011322 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099631\|ref\|XP_008450698.1\|	5.4e-10	86.84	PREDICTED: glutathione synthetase, chloroplastic [Cucumis melo]	[more]
gi\|305430792\|gb\|ADM53349.1\|	3.5e-09	81.58	glutathione synthetase [Cucumis sativus]	[more]
gi\|449435701\|ref\|XP_004135633.1\|	3.5e-09	81.58	PREDICTED: glutathione synthetase, chloroplastic [Cucumis sativus]	[more]
gi\|566199071\|ref\|XP_006375779.1\|	2.3e-08	83.33	hypothetical protein POPTR_0013s02780g [Populus trichocarpa]	[more]
gi\|743829494\|ref\|XP_011023533.1\|	2.3e-08	83.33	PREDICTED: glutathione synthetase, chloroplastic-like [Populus euphratica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006750	glutathione biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004363	glutathione synthase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011322	Cla011322.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011322	Silver-seed gourd	carwmB0548
Cla011322	Cucumber (Chinese Long) v3	cucwmB025
Cla011322	Watermelon (97103) v2	wmwmbB125
Cla011322	Watermelon (97103) v2	wmwmbB136
Cla011322	Cucumber (Gy14) v1	cgywmB300
Cla011322	Cucurbita maxima (Rimu)	cmawmB092
Cla011322	Cucurbita moschata (Rifu)	cmowmB083
Cla011322	Melon (DHL92) v3.5.1	mewmB271
Cla011322	Watermelon (Charleston Gray)	wcgwmB224
Cla011322	Cucumber (Chinese Long) v2	cuwmB020
Cla011322	Cucurbita pepo (Zucchini)	cpewmB643
Cla011322	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla011322	Cucumber (Gy14) v2	cgybwmB022
Cla011322	Melon (DHL92) v3.6.1	medwmB262