Cla011304 (gene) Watermelon (97103) v1

Overview
NameCla011304
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTrafficking protein particle complex subunit 6B (AHRD V1 ***- C1BK71_OSMMO); contains Interpro domain(s) IPR007194 Transport protein particle (TRAPP) component
LocationChr3 : 27431549 .. 27433753 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACTGATCAAACACCAAAAGAAAGTCACAAGAGAAGCCTTTGGATGGATAGGGGATCCAAAAGTGAACATCCCTCCAATCGAGGTTAAGATGAAAGTTCCCCAACAAAGGTAACAAGTCTTGAACATCTGTCATTTCCCTATTGGTCAACAAATAACAAAAATCAAGAGAAGGAGAAAATTGGCTCTCATAGTGAGAAAGAACCAAAGTAAAGAAGGGGGGCTCTCATAATGAGAAAGAATCGAAGCAACTCAGTGATACTTCGATGAGGACTACTGATATAACTAGGAAACAAGGAGCAAAGGGGACTATCCCTCAACAACTTATCTTCCCAAAAGAAAGTTACCCTCCCATTATCCACCACATATGAGCATACTGATAAAGATATAAAATCTGCCAAACTATTTTTCCATGGGTTTCTAGAAGTAACTTTAACCATACTGACGTCCATTCAAAAGTATGAGGACCATACTTGCTAACAATAACCTTGTGCCACATGGTGTCGTGATGAAATCGTGAAAGCCATTTAGCCAGAGAGGCTCAATTCCTTACCCTAATATGTCTACACACAACCCGCACCTAGGTTCAGAGGCCTAGATGCCACCTCTCTCCTCACAACATGAGAACCTTTCCCCTCCTCAACCCCCCGAGGAATTCCTGCATTAATTTCTTAATGGTTTTACATACTGAACTAAGAAGTTTAAAAGGGACAAGAAATAAATCGGAATGCCACTCAGGATTGACTTAATAAAGGTAAGCCTACCACCCTTCGAAAAAAACTCTCTCTCCAAGAAGCAAGCCTCTTACAAACCTTACCATCGTGGTCCCAAAACCTATTTGAGACAACCTTGAGAGTTCAAGAACTTGTACTGTTTAAAATTGAAGGACCTATTAGATACAATTGTGAAAGTTATAGGACTACTTATTATTTAAGCTAGATTTATAAAATTGTGACTTCTGGATTTCTAGTTAGAATGTATGATTTGAAGAATAGTTAGTAATGTTTCCACTTAAAAACTAGAAAAGTAGGGGCATTATGTGTAGGGGATTTCTAGTTGGAAACTATGATTTGAAGAATAGTTGTGATCATGGGACTGAGGGTAATGATCATGTGTTTCTGAGGTGATCCAAGTTAGTACGTTTGCAGGTGACACTGAATCAGGTCTATTTTAATGGGAATGGGGAGGGGCCGAGTGTCTTAATTGAGCTGAATCCATTGGAGGGCAAAGGGAGAAGTTGAATTTTTGTGTACTGATGTATTGGAGGAAATCTAACAAGGCTTGGACAAATTTCCCTCGGTTTTAATCCTTTTATGGATCTGCCTCCATCACAGAACTAATACCACATTATTACATTGTTATTAGCTAGATGTCTTCTATAAATGACTCCTATTGTTGTCCACCATGTCAAAAGGATGAAATTGAGTGGTTGGTTCACGGAATGTTATTAACTGGGACTGTTCAACTGAGCACTAGATGGTTTTCAAGCCGCATTTTATTGATCACTATTAAAATTTCCTGCCGAAAGTGTCTATATATTATGAATTACCTTCCATTTTTCCAGCTCATTTTATGTCTTCGTATTCATGGTATTTGATGACTAAATACTGCAACTTAACTGCTAAGCTTTATTTTTACTAGGTATACAATGGAACGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTTTGGTCTGAACTCTTCAAAAAGCAGATAGATAACTTGAAAACAAATCATAGAGTAAGATCAGAAGCCGAACCTAGGAGCAGCCCTTTCTTTTTCCTGTGTACTTTTCTTTATCCTACATGAACTTGGCCTAAATTCGGAAAATTGTTTTAATTCCCAGGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGAATGTCGGTGGACCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCCTGTGCGGTTTCTGCTGATATTTCAAATATTCCAGCATGTAAGTAATCAAACTTCAATCATAATCCCCACTTTCCTTTTAGGTTTGAGAAATGAGAATGACCTGCCGAAATCGCTTGTTTTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGA

mRNA sequence

ATGCTACTGATCAAACACCAAAAGAAAGTCACAAGAGAAGCCTTTGGATGGATAGGGGATCCAAAAGTGAACATCCCTCCAATCGAGGTTAAGATGAAAGTTCCCCAACAAAGGTATACAATGGAACGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTTTGGTCTGAACTCTTCAAAAAGCAGATAGATAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGAATGTCGGTGGACCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCCTGTGCGGTTTCTGCTGATATTTCAAATATTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Coding sequence (CDS)

ATGCTACTGATCAAACACCAAAAGAAAGTCACAAGAGAAGCCTTTGGATGGATAGGGGATCCAAAAGTGAACATCCCTCCAATCGAGGTTAAGATGAAAGTTCCCCAACAAAGGTATACAATGGAACGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTTTGGTCTGAACTCTTCAAAAAGCAGATAGATAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGAATGTCGGTGGACCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCCTGTGCGGTTTCTGCTGATATTTCAAATATTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Protein sequence

MLLIKHQKKVTREAFGWIGDPKVNIPPIEVKMKVPQQRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRIKA
Homology
[Close]
BLAST of Cla011304 vs. Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.5e-28
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +R+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS  
Sbjct: 49  ERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAG 108

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
            Q               +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I
Sbjct: 109 KQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI 156

Query: 157 K 158
           +
Sbjct: 169 Q 156

[Close]
BLAST of Cla011304 vs. Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.5e-28
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +R+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS  
Sbjct: 49  ERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAG 108

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
            Q               +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I
Sbjct: 109 KQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI 156

Query: 157 K 158
           +
Sbjct: 169 Q 156

[Close]
BLAST of Cla011304 vs. Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.4e-27
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +R+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S  
Sbjct: 49  ERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAG 108

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
            Q               +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I
Sbjct: 109 KQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI 156

Query: 157 K 158
           +
Sbjct: 169 Q 156

[Close]
BLAST of Cla011304 vs. Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-19
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +R  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L  M   
Sbjct: 50  ERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLVTMGSG 109

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
           PQ               +     L F CG++ GAL  LG    V+A ++++PAC F V I
Sbjct: 110 PQ-------------YLEEAPKFLAFTCGLLCGALHTLGFQSLVTASVASLPACKFQVVI 157

Query: 157 K 158
           +
Sbjct: 170 Q 157

[Close]
BLAST of Cla011304 vs. Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-19
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +R   E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+GT+VLQDN F  L RM   
Sbjct: 50  ERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM--- 109

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
                    A G     +A    L F CG++RG LS LG+   V+A ++ +PAC F V I
Sbjct: 110 ---------ASGLQYLEEAPKF-LAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVI 157

Query: 157 K 158
           +
Sbjct: 170 Q 157

[Close]
BLAST of Cla011304 vs. TrEMBL
Match: A0A0A0M1M8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573010 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.3e-63
Identity = 118/122 (96.72%), Postives = 121/122 (99.18%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD
Sbjct: 50  ERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 109

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
           PQ+ESQDNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSFVVRI
Sbjct: 110 PQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 169

Query: 157 KA 159
           KA
Sbjct: 170 KA 171

[Close]
BLAST of Cla011304 vs. TrEMBL
Match: A5AGD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g00700 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.1e-56
Identity = 111/126 (88.10%), Postives = 117/126 (92.86%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTMERPRF+DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL+RMSVD
Sbjct: 50  ERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSVD 109

Query: 97  PQSE----SQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSF 156
           P  E    +QD S D ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSF
Sbjct: 110 PSPENTGSAQDPSTD-ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSF 169

Query: 157 VVRIKA 159
           VVRIKA
Sbjct: 170 VVRIKA 174

[Close]
BLAST of Cla011304 vs. TrEMBL
Match: A0A067JUC3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23423 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 110/126 (87.30%), Postives = 114/126 (90.48%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTMERPRF+DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDNRFRWL RMSVD
Sbjct: 50  ERYTMERPRFSDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLARMSVD 109

Query: 97  PQSE----SQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSF 156
           P  E    SQD SA  ENKA QA SMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSF
Sbjct: 110 PTIESGGASQDPSALAENKATQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSF 169

Query: 157 VVRIKA 159
           VVRIKA
Sbjct: 170 VVRIKA 175

[Close]
BLAST of Cla011304 vs. TrEMBL
Match: M1CMT7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027544 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 108/126 (85.71%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTM+RPRFTDHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDNRFRWL+RMSVD
Sbjct: 50  ERYTMDRPRFTDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLSRMSVD 109

Query: 97  PQSES----QDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSF 156
           P  E+    QD SA  ENKAAQA  MHLYFPCGIIRGALSNLGIPCAVSADISN+PACSF
Sbjct: 110 PSIETLGSIQDPSAMAENKAAQAIGMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSF 169

Query: 157 VVRIKA 159
           V+RIKA
Sbjct: 170 VIRIKA 175

[Close]
BLAST of Cla011304 vs. TrEMBL
Match: K4BTM8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 108/126 (85.71%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTM+RPRFTDHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDNRFRWL+RMSVD
Sbjct: 50  ERYTMDRPRFTDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLSRMSVD 109

Query: 97  PQSES----QDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSF 156
           P  E+    QD SA  ENKAAQA  MHLYFPCGIIRGALSNLGIPCAVSADISN+PACSF
Sbjct: 110 PSIETLGSIQDPSAMAENKAAQAIGMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSF 169

Query: 157 VVRIKA 159
           V+RIKA
Sbjct: 170 VIRIKA 175

[Close]
BLAST of Cla011304 vs. NCBI nr
Match: gi|659099689|ref|XP_008450728.1| (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.6e-63
Identity = 119/122 (97.54%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD
Sbjct: 50  ERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 109

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
           PQ+ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSFVVRI
Sbjct: 110 PQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 169

Query: 157 KA 159
           KA
Sbjct: 170 KA 171

[Close]
BLAST of Cla011304 vs. NCBI nr
Match: gi|659099687|ref|XP_008450727.1| (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 2.8e-63
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 38  RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP 97
           RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP
Sbjct: 55  RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP 114

Query: 98  QSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRIK 157
           Q+ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSFVVRIK
Sbjct: 115 QNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 174

Query: 158 A 159
           A
Sbjct: 175 A 175

[Close]
BLAST of Cla011304 vs. NCBI nr
Match: gi|449435724|ref|XP_004135644.1| (PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 4.8e-63
Identity = 118/122 (96.72%), Postives = 121/122 (99.18%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD
Sbjct: 50  ERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 109

Query: 97  PQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSFVVRI 156
           PQ+ESQDNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSFVVRI
Sbjct: 110 PQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 169

Query: 157 KA 159
           KA
Sbjct: 170 KA 171

[Close]
BLAST of Cla011304 vs. NCBI nr
Match: gi|225451136|ref|XP_002269746.1| (PREDICTED: trafficking protein particle complex subunit 6B [Vitis vinifera])

HSP 1 Score: 225.3 bits (573), Expect = 7.4e-56
Identity = 111/126 (88.10%), Postives = 117/126 (92.86%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTMERPRF+DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN+FRWL+RMSVD
Sbjct: 50  ERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSVD 109

Query: 97  PQSE----SQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSF 156
           P  E    +QD S D ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISN+PACSF
Sbjct: 110 PSPENTGSAQDPSTD-ENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSF 169

Query: 157 VVRIKA 159
           VVRIKA
Sbjct: 170 VVRIKA 174

[Close]
BLAST of Cla011304 vs. NCBI nr
Match: gi|697129598|ref|XP_009618860.1| (PREDICTED: trafficking protein particle complex subunit 6B [Nicotiana tomentosiformis])

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 109/126 (86.51%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 37  QRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD 96
           +RYTM+RPRFTDHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDNRFRWL+RMSVD
Sbjct: 50  ERYTMDRPRFTDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLSRMSVD 109

Query: 97  PQSES----QDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNIPACSF 156
           P  E+    QD SA  ENKAAQA  MHLYFPCGIIRGALSNLGIPCAVSADISN+PACSF
Sbjct: 110 PSIETLGSIQDPSAMAENKAAQAIGMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSF 169

Query: 157 VVRIKA 159
           VVRIKA
Sbjct: 170 VVRIKA 175

The following BLAST results are available for this feature:
BLAST of Cla011304 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPC6B_BOVIN8.5e-2850.41Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 S... [more]
TPC6B_HUMAN8.5e-2850.41Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1... [more]
TPC6B_MOUSE9.4e-2748.76Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1... [more]
TPC6A_MOUSE1.4e-1938.84Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=1... [more]
TPC6A_BOVIN9.4e-1941.32Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 S... [more]
BLAST of Cla011304 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1M8_CUCSA3.3e-6396.72Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573010 PE=4 SV=1[more]
A5AGD5_VITVI5.1e-5688.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g00700 PE=4 SV=... [more]
A0A067JUC3_JATCU1.5e-5587.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23423 PE=4 SV=1[more]
M1CMT7_SOLTU1.5e-5585.71Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027544 PE=4 SV=1[more]
K4BTM8_SOLLC1.5e-5585.71Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Cla011304 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099689|ref|XP_008450728.1|1.6e-6397.54PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m... [more]
gi|659099687|ref|XP_008450727.1|2.8e-6398.35PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m... [more]
gi|449435724|ref|XP_004135644.1|4.8e-6396.72PREDICTED: trafficking protein particle complex subunit 6B [Cucumis sativus][more]
gi|225451136|ref|XP_002269746.1|7.4e-5688.10PREDICTED: trafficking protein particle complex subunit 6B [Vitis vinifera][more]
gi|697129598|ref|XP_009618860.1|1.6e-5586.51PREDICTED: trafficking protein particle complex subunit 6B [Nicotiana tomentosif... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR024096NO_sig/Golgi_transp_ligand-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048868 pollen tube development
biological_process GO:0009737 response to abscisic acid
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU32388watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011304Cla011304.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU32388WMU32388transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 37..156
score: 8.0
IPR024096NO signalling/Golgi transport ligand-binding domainunknownSSF111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 42..157
score: 8.63
NoneNo IPR availableGENE3DG3DSA:3.30.1380.20coord: 42..151
score: 5.8
NoneNo IPR availablePANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 38..158
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla011304Cla97C03G066870Watermelon (97103) v2wmwmbB125
Cla011304CmoCh10G011780Cucurbita moschata (Rifu)cmowmB041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla011304Cucumber (Gy14) v2cgybwmB022
Cla011304Melon (DHL92) v3.6.1medwmB262
Cla011304Cucumber (Chinese Long) v3cucwmB025
Cla011304Wax gourdwgowmB658
Cla011304Cucumber (Gy14) v1cgywmB531
Cla011304Cucurbita maxima (Rimu)cmawmB049
Cla011304Melon (DHL92) v3.5.1mewmB271
Cla011304Watermelon (Charleston Gray)wcgwmB224
Cla011304Cucumber (Chinese Long) v2cuwmB020
Cla011304Cucurbita pepo (Zucchini)cpewmB359
Cla011304Bottle gourd (USVL1VR-Ls)lsiwmB396