Cla011050 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011050
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 16354154 .. 16354579 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGGTGGCTTGAAGGCGGATGGATGGCCGGGTTGTGCAATGGAAAAACTGAAAGGTTGAAGGGCATCTTAAAGAGTTGGAATAAGGAGGTGTTTGGCAATGTGAGCTGCCAAAAGAAGGCTTTAACTGATAAGATAGGGAAGCTAGATAAACTAGAAGAGTTGGTAGCTTTATCTGAAGAAGATAGAAAGGAAAGGGAAGCTTGTAAGGCTGCTTTAGCTGAGAGTGACTGTTATCAAAGAGCAATGTGCTTGGCTCAAAAAAGTAACTTTAAGTGGCTACAGGAAGGTGGGAGAACTCGAGCTTTTGTCATAGATGGACTTTGGCTCGAAGAAGCAAAAATGTTGTTTCCACATAGAGAACAACTAGGGGCAATTCTCCTCAGGGAAGATGAAATTGTTGATGAGATTATTGGCTTTTAA

mRNA sequence

ATGGTGGGGTGGCTTGAAGGCGGATGGATGGCCGGGTTGTGCAATGGAAAAACTGAAAGGTTGAAGGGCATCTTAAAGAGTTGGAATAAGGAGGTGTTTGGCAATGTGAGCTGCCAAAAGAAGGCTTTAACTGATAAGATAGGGAAGCTAGATAAACTAGAAGAGTTGGTAGCTTTATCTGAAGAAGATAGAAAGGAAAGGGAAGCTTGTAAGGCTGCTTTAGCTGAGAGTGACTGTTATCAAAGAGCAATGTGCTTGGCTCAAAAAAGTAACTTTAAGTGGCTACAGGAAGGTGGGAGAACTCGAGCTTTTGTCATAGATGGACTTTGGCTCGAAGAAGCAAAAATGTTGTTTCCACATAGAGAACAACTAGGGGCAATTCTCCTCAGGGAAGATGAAATTGTTGATGAGATTATTGGCTTTTAA

Coding sequence (CDS)

ATGGTGGGGTGGCTTGAAGGCGGATGGATGGCCGGGTTGTGCAATGGAAAAACTGAAAGGTTGAAGGGCATCTTAAAGAGTTGGAATAAGGAGGTGTTTGGCAATGTGAGCTGCCAAAAGAAGGCTTTAACTGATAAGATAGGGAAGCTAGATAAACTAGAAGAGTTGGTAGCTTTATCTGAAGAAGATAGAAAGGAAAGGGAAGCTTGTAAGGCTGCTTTAGCTGAGAGTGACTGTTATCAAAGAGCAATGTGCTTGGCTCAAAAAAGTAACTTTAAGTGGCTACAGGAAGGTGGGAGAACTCGAGCTTTTGTCATAGATGGACTTTGGCTCGAAGAAGCAAAAATGTTGTTTCCACATAGAGAACAACTAGGGGCAATTCTCCTCAGGGAAGATGAAATTGTTGATGAGATTATTGGCTTTTAA

Protein sequence

MVGWLEGGWMAGLCNGKTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVALSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFVIDGLWLEEAKMLFPHREQLGAILLREDEIVDEIIGF

Homology

[Close]

BLAST of Cla011050 vs. TrEMBL
Match: A5BT32_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008771 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 47/157 (29.94%), Postives = 69/157 (43.95%), Query Frame = 1


Query: 5   LEGGWMAGLCNG--------KTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEEL 64
           L+G W +   NG        K + LK ILKSWNK+VFG V   KK   DK+   D  E+L
Sbjct: 563 LKGWWQSLSFNGSFSFILAEKLKALKAILKSWNKDVFGQVDVNKKVALDKVNFWDGQEKL 622

Query: 65  VALSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFV----------- 124
             LS E+ ++R+  K    E       +   QKS   WL+ G R   +            
Sbjct: 623 RPLSLEELEDRKVAKGDF-EKWALMEEVSWRQKSREVWLRXGDRNTGYFHRMANSHRRRN 682

Query: 125 ------IDGLWLEEAKMLFPHREQLGAILLREDEIVD 137
                 +DG+WL E + +     + G +   +D++ D
Sbjct: 683 CLSKIKVDGVWLTEEQEI-----KRGVVRAFKDQLTD 713

[Close]

BLAST of Cla011050 vs. TrEMBL
Match: A5AGD4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031269 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 46/155 (29.68%), Postives = 68/155 (43.87%), Query Frame = 1


Query: 3   GWLEG----GWMAGLCNGKTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVA 62
           GW +G    G  + +   K + LK ILK WNK+VFG V   KK   DK+   D  E++  
Sbjct: 747 GWWQGLSFNGSFSFILAEKLKALKAILKLWNKDVFGQVDVNKKVALDKVNFWDGQEKIRP 806

Query: 63  LSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFV------------- 122
           LS E+ + R+  K    E       +   QKS   WL+EG R   F              
Sbjct: 807 LSLEELEARKVAKGDF-EKWALMEEVSWRQKSREVWLREGDRNTGFFHKMANSHRRRNCL 866

Query: 123 ----IDGLWLEEAKMLFPHREQLGAILLREDEIVD 137
               +DG+WL E + +     + G +   +D++ D
Sbjct: 867 SKIKVDGVWLTEEQEI-----KRGVVRAFKDQLTD 895

[Close]

BLAST of Cla011050 vs. TrEMBL
Match: A5AX59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015869 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-07
Identity = 46/155 (29.68%), Postives = 68/155 (43.87%), Query Frame = 1


Query: 3    GWLEG----GWMAGLCNGKTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVA 62
            GW +G    G  + +   K + LK ILK WNK+VFG V   KK   DK+   D  E++  
Sbjct: 2153 GWWQGLSFNGSFSFILAEKQKALKAILKLWNKDVFGKVDVNKKVALDKVIFWDGQEKIRP 2212

Query: 63   LSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFV------------- 122
            LS E+ + R+  K    E       +   QKS   WL+EG R   F              
Sbjct: 2213 LSLEELEARKVAKGDF-EKWALMEEVSWRQKSREVWLREGDRNTGFFHKMANSHSRRNCL 2272

Query: 123  ----IDGLWLEEAKMLFPHREQLGAILLREDEIVD 137
                +DG+WL E + +     + G +   +D++ D
Sbjct: 2273 SKIKVDGVWLTEEQEI-----KRGVVRAFKDQLTD 2301

[Close]

BLAST of Cla011050 vs. TrEMBL
Match: A5AWQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022809 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-07
Identity = 44/137 (32.12%), Postives = 60/137 (43.80%), Query Frame = 1


Query: 17   KTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVALSEEDRKEREACKAALAE 76
            K + LK ILKSWNK+VFG V   KK   DK+   D  E+L  LS E+ + R+  K    E
Sbjct: 1437 KFKALKAILKSWNKDVFGQVGVNKKLALDKVNFWDGQEKLRPLSLEELEARKVAKGDF-E 1496

Query: 77   SDCYQRAMCLAQKSNFKWLQEGGRTRAFV-----------------IDGLWLEEAKMLFP 136
                   +   QKS   WL+EG R   F                  +DG WL E   +  
Sbjct: 1497 KWALMEEVSWRQKSREVWLREGDRNTGFFHKMANSHRRRNCLSKIKVDGXWLTEEXEI-- 1556

[Close]

BLAST of Cla011050 vs. TrEMBL
Match: A5BN54_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040983 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 48/145 (33.10%), Postives = 60/145 (41.38%), Query Frame = 1


Query: 5   LEGGWMAGL---------CNGKTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEE 64
           L GGW  GL            K + LK ILKSWNKEVFG V   KK   DK+   D  E+
Sbjct: 11  LLGGWWQGLRFSGSFSFILAEKLKALKVILKSWNKEVFGKVGVNKKLALDKVDFWDNQEK 70

Query: 65  LVALSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFVIDGLWLEEAK 124
              LS E+ + R+  K    E       +   QKS   WL+EG +   F          K
Sbjct: 71  GRVLSMEELEARKEAKENF-EKWVLMEEISWRQKSREVWLKEGDKNTGFFHKMANSHRRK 130

Query: 125 MLFPHREQLGAILLREDEIVDEIIG 141
                 +  G  L  E EI   ++G
Sbjct: 131 NCLSKIKVNGTWLTEEQEIKGGVVG 154

[Close]

BLAST of Cla011050 vs. NCBI nr
Match: gi|147802057|emb|CAN74986.1| (hypothetical protein VITISV_008771 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 47/157 (29.94%), Postives = 69/157 (43.95%), Query Frame = 1


Query: 5   LEGGWMAGLCNG--------KTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEEL 64
           L+G W +   NG        K + LK ILKSWNK+VFG V   KK   DK+   D  E+L
Sbjct: 563 LKGWWQSLSFNGSFSFILAEKLKALKAILKSWNKDVFGQVDVNKKVALDKVNFWDGQEKL 622

Query: 65  VALSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFV----------- 124
             LS E+ ++R+  K    E       +   QKS   WL+ G R   +            
Sbjct: 623 RPLSLEELEDRKVAKGDF-EKWALMEEVSWRQKSREVWLRXGDRNTGYFHRMANSHRRRN 682

Query: 125 ------IDGLWLEEAKMLFPHREQLGAILLREDEIVD 137
                 +DG+WL E + +     + G +   +D++ D
Sbjct: 683 CLSKIKVDGVWLTEEQEI-----KRGVVRAFKDQLTD 713

[Close]

BLAST of Cla011050 vs. NCBI nr
Match: gi|731381398|ref|XP_010664448.1| (PREDICTED: uncharacterized protein LOC104882505 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-07
Identity = 51/152 (33.55%), Postives = 65/152 (42.76%), Query Frame = 1


Query: 5   LEGGWMAGLCNG--------KTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEEL 64
           L+G W +   NG        K + LK ILKSWNK+VFG V   KK   DK+   D  E+L
Sbjct: 12  LKGWWQSLRFNGSFSFILVEKLKALKAILKSWNKDVFGKVGVNKKLALDKVAFWDAQEKL 71

Query: 65  VALSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFVIDGLWLEEAKM 124
             LS E+ + R+  K    E       +   QKS   WL+EG R   F          KM
Sbjct: 72  RPLSMEELEARKEAKRDF-EKWALMEEVSWRQKSREVWLREGDRNTGFF--------HKM 131

Query: 125 LFPHREQ--------LGAILLREDEIVDEIIG 141
              HR +         G  L  E EI   ++G
Sbjct: 132 ANSHRRRNCLSKIKINGTWLTEEQEIKGGVVG 154

[Close]

BLAST of Cla011050 vs. NCBI nr
Match: gi|147767145|emb|CAN75646.1| (hypothetical protein VITISV_031269 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-07
Identity = 46/155 (29.68%), Postives = 68/155 (43.87%), Query Frame = 1


Query: 3   GWLEG----GWMAGLCNGKTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVA 62
           GW +G    G  + +   K + LK ILK WNK+VFG V   KK   DK+   D  E++  
Sbjct: 747 GWWQGLSFNGSFSFILAEKLKALKAILKLWNKDVFGQVDVNKKVALDKVNFWDGQEKIRP 806

Query: 63  LSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFV------------- 122
           LS E+ + R+  K    E       +   QKS   WL+EG R   F              
Sbjct: 807 LSLEELEARKVAKGDF-EKWALMEEVSWRQKSREVWLREGDRNTGFFHKMANSHRRRNCL 866

Query: 123 ----IDGLWLEEAKMLFPHREQLGAILLREDEIVD 137
               +DG+WL E + +     + G +   +D++ D
Sbjct: 867 SKIKVDGVWLTEEQEI-----KRGVVRAFKDQLTD 895

[Close]

BLAST of Cla011050 vs. NCBI nr
Match: gi|147798168|emb|CAN60702.1| (hypothetical protein VITISV_015869 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-07
Identity = 46/155 (29.68%), Postives = 68/155 (43.87%), Query Frame = 1


Query: 3    GWLEG----GWMAGLCNGKTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVA 62
            GW +G    G  + +   K + LK ILK WNK+VFG V   KK   DK+   D  E++  
Sbjct: 2153 GWWQGLSFNGSFSFILAEKQKALKAILKLWNKDVFGKVDVNKKVALDKVIFWDGQEKIRP 2212

Query: 63   LSEEDRKEREACKAALAESDCYQRAMCLAQKSNFKWLQEGGRTRAFV------------- 122
            LS E+ + R+  K    E       +   QKS   WL+EG R   F              
Sbjct: 2213 LSLEELEARKVAKGDF-EKWALMEEVSWRQKSREVWLREGDRNTGFFHKMANSHSRRNCL 2272

Query: 123  ----IDGLWLEEAKMLFPHREQLGAILLREDEIVD 137
                +DG+WL E + +     + G +   +D++ D
Sbjct: 2273 SKIKVDGVWLTEEQEI-----KRGVVRAFKDQLTD 2301

[Close]

BLAST of Cla011050 vs. NCBI nr
Match: gi|147789894|emb|CAN76132.1| (hypothetical protein VITISV_022809 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-07
Identity = 44/137 (32.12%), Postives = 60/137 (43.80%), Query Frame = 1


Query: 17   KTERLKGILKSWNKEVFGNVSCQKKALTDKIGKLDKLEELVALSEEDRKEREACKAALAE 76
            K + LK ILKSWNK+VFG V   KK   DK+   D  E+L  LS E+ + R+  K    E
Sbjct: 1437 KFKALKAILKSWNKDVFGQVGVNKKLALDKVNFWDGQEKLRPLSLEELEARKVAKGDF-E 1496

Query: 77   SDCYQRAMCLAQKSNFKWLQEGGRTRAFV-----------------IDGLWLEEAKMLFP 136
                   +   QKS   WL+EG R   F                  +DG WL E   +  
Sbjct: 1497 KWALMEEVSWRQKSREVWLREGDRNTGFFHKMANSHRRRNCLSKIKVDGXWLTEEXEI-- 1556

The following BLAST results are available for this feature:

BLAST of Cla011050 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BT32_VITVI	1.3e-07	29.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008771 PE=4 SV=1	[more]
A5AGD4_VITVI	2.3e-07	29.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031269 PE=4 SV=1	[more]
A5AX59_VITVI	6.7e-07	29.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015869 PE=4 SV=1	[more]
A5AWQ8_VITVI	6.7e-07	32.12	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022809 PE=4 SV=1	[more]
A5BN54_VITVI	1.9e-06	33.10	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040983 PE=4 SV=1	[more]

BLAST of Cla011050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147802057\|emb\|CAN74986.1\|	1.9e-07	29.94	hypothetical protein VITISV_008771 [Vitis vinifera]	[more]
gi\|731381398\|ref\|XP_010664448.1\|	3.3e-07	33.55	PREDICTED: uncharacterized protein LOC104882505 [Vitis vinifera]	[more]
gi\|147767145\|emb\|CAN75646.1\|	3.3e-07	29.68	hypothetical protein VITISV_031269 [Vitis vinifera]	[more]
gi\|147798168\|emb\|CAN60702.1\|	9.6e-07	29.68	hypothetical protein VITISV_015869 [Vitis vinifera]	[more]
gi\|147789894\|emb\|CAN76132.1\|	9.6e-07	32.12	hypothetical protein VITISV_022809 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011050	Cla011050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011050	Cucumber (Gy14) v1	cgywmB581
Cla011050	Cucurbita maxima (Rimu)	cmawmB202
Cla011050	Cucurbita maxima (Rimu)	cmawmB386
Cla011050	Cucurbita moschata (Rifu)	cmowmB189
Cla011050	Cucurbita moschata (Rifu)	cmowmB376
Cla011050	Melon (DHL92) v3.5.1	mewmB173
Cla011050	Watermelon (Charleston Gray)	wcgwmB155
Cla011050	Cucumber (Chinese Long) v2	cuwmB042
Cla011050	Cucurbita pepo (Zucchini)	cpewmB014
Cla011050	Cucumber (Gy14) v2	cgybwmB043
Cla011050	Melon (DHL92) v3.6.1	medwmB161
Cla011050	Silver-seed gourd	carwmB0002
Cla011050	Cucumber (Chinese Long) v3	cucwmB049
Cla011050	Watermelon (97103) v2	wmwmbB246