Cla011033 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011033
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 16832776 .. 16833187 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGTTTCAATTGGGCAATTCGATAAGGATGCAGGCTCAAGATTACATCCTTTGGTATAATAATATTACGAGACGCTACATTACTCGTCCGGGAGCGGCTTTGGGTCATTTGGTATATAATCAAATATTGTCTAATTATTTTTAATTTAAATTTATTTGAAATATTATCTAATTGTTTTGTAATTCACAGAGATCGAGCAATAGTAATCTTCGTGATGTTGCAAATGATCCAGATCAGGTATTTACTATATGTAGTAATAACGCGAGTTACACGGAGGAATTGCGCTACATGTACGATATACCTATTGCACCTCTACCAGTTCCTAGGCATAAGGGACGTGCTAAAGCAGAAGAAGATAAGTTTGATGTGGTTGACCATAATGTGGAAGAATTGCCTCCTATGACATAG

mRNA sequence

ATGGGCGTTTCAATTGGGCAATTCGATAAGGATGCAGGCTCAAGATTACATCCTTTGAGATCGAGCAATAGTAATCTTCGTGATGTTGCAAATGATCCAGATCAGGTATTTACTATATGTAGTAATAACGCGAGTTACACGGAGGAATTGCGCTACATGTACGATATACCTATTGCACCTCTACCAGTTCCTAGGCATAAGGGACGTGCTAAAGCAGAAGAAGATAAGTTTGATGTGGTTGACCATAATGTGGAAGAATTGCCTCCTATGACATAG

Coding sequence (CDS)

ATGGGCGTTTCAATTGGGCAATTCGATAAGGATGCAGGCTCAAGATTACATCCTTTGAGATCGAGCAATAGTAATCTTCGTGATGTTGCAAATGATCCAGATCAGGTATTTACTATATGTAGTAATAACGCGAGTTACACGGAGGAATTGCGCTACATGTACGATATACCTATTGCACCTCTACCAGTTCCTAGGCATAAGGGACGTGCTAAAGCAGAAGAAGATAAGTTTGATGTGGTTGACCATAATGTGGAAGAATTGCCTCCTATGACATAG

Protein sequence

MGVSIGQFDKDAGSRLHPLRSSNSNLRDVANDPDQVFTICSNNASYTEELRYMYDIPIAPLPVPRHKGRAKAEEDKFDVVDHNVEELPPMT

Homology

[Close]

BLAST of Cla011033 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-13
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 13  GSRLHPLRSSNSNLRDVANDPDQVFTICSNNASYTEELRYMYDIPIAPLPVPRHKGRAKA 72
           G+ +  LRS+N+ LR++A+DP QV  IC++N  Y E + YMYD+PI P PV R +   + 
Sbjct: 43  GAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQ- 102

Query: 73  EEDKFDVVDHNVEELPPMT 92
           E D+ + VD + EE+PPMT
Sbjct: 103 ESDQLEEVDQHGEEVPPMT 120

[Close]

BLAST of Cla011033 vs. NCBI nr
Match: gi|659123450|ref|XP_008461670.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-06
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1


Query: 20  RSSNSNLRDVANDPDQVFTICSNNASYTEELRYMYDIPIAPLPVPRHKGRAKAEEDKFDV 79
           RS N  L++VA+DP QV  IC++N  Y E + YMY++ I P  V R +   +      +V
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 80  VDHNVEELP 89
           V H VEE+P
Sbjct: 222 VQH-VEEVP 229

[Close]

BLAST of Cla011033 vs. NCBI nr
Match: gi|659123452|ref|XP_008461671.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-06
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1


Query: 20  RSSNSNLRDVANDPDQVFTICSNNASYTEELRYMYDIPIAPLPVPRHKGRAKAEEDKFDV 79
           RS N  L++VA+DP QV  IC++N  Y E + YMY++ I P  V R +   +      +V
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 80  VDHNVEELP 89
           V H VEE+P
Sbjct: 215 VQH-VEEVP 222

The following BLAST results are available for this feature:

BLAST of Cla011033 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	5.8e-13	46.84	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]
gi\|659123450\|ref\|XP_008461670.1\|	9.0e-06	42.03	PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo]	[more]
gi\|659123452\|ref\|XP_008461671.1\|	9.0e-06	42.03	PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011033	Cla011033.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011033	Cucumber (Gy14) v2	cgybwmB043
Cla011033	Cucumber (Chinese Long) v3	cucwmB049
Cla011033	Watermelon (97103) v2	wmwmbB246
Cla011033	Cucumber (Gy14) v1	cgywmB581
Cla011033	Cucurbita maxima (Rimu)	cmawmB202
Cla011033	Cucurbita maxima (Rimu)	cmawmB386
Cla011033	Cucurbita moschata (Rifu)	cmowmB189
Cla011033	Cucurbita moschata (Rifu)	cmowmB378
Cla011033	Watermelon (Charleston Gray)	wcgwmB155
Cla011033	Cucumber (Chinese Long) v2	cuwmB042
Cla011033	Cucurbita pepo (Zucchini)	cpewmB014
Cla011033	Bottle gourd (USVL1VR-Ls)	lsiwmB205