Cla011024 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011024
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 17107743 .. 17108770 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTAATGGGGTGAATGAGGTGTAGGTTCTCATTGAAGTTGTAGATAACACCAACTCTACATTACCATACCTGTTGTTGGAAGTGCTTATAAGGTTTTTGATGCAATTGGATCGTATGTTCCATGGCCAAAGCATTTGGTGGTTGTAGAAAAAGCAGAAAAGGTAAATTTTATTTATGAAAATATGAATTATTGCATTTGTATGTTTCATTTTAATGTTTGACATTTTTTGGATAGGCACATAAGAAACATTCTCGAGAGTTATCTGCTTTGAAAGGAAAGAAACCAACGGTCGATGTGTCAAAATTTCCAACAGCGATACGATTTGTGCTAAAATATGTGGAAGGGGAGATGGTTGATGAATATCTACATATCCCAATTGATGATCAGATTTTTAGGTATTACTTCAATTTCTACATAATGAAGGACAACATCAAATAGTTATGTCAGATGGAGGAATTAACACTCTCAATTATAATGGGTTATATCGCGTATGTACAATTAACTAACCTGATTAATATTAATAATTTATTGTAACATTTCTAATATTTAAATTTTTTTATTTTTTATTTTTTATGATCTTAGATGTTTGGTAGCAGTTGACCCAAGTATATTAGAGGATTATGCATTCATTCATCCTGTGCAAATTTCAAGTGGCTTAGGCACTGAGGAACAACGCTCTACATTCTTGTGCAACAGGTTGATCTCGACAAAGAATAAATTGTTGATATGTTCGTATAATCCCGGGTAAGTTTAGAAAATGAGTATTTTAATAATTTTTTATTCATAAACATTAATTTATCTAACTTTATTGAGTTATGTCTTTTACGTAGATATCATTGGATGGTAGTTGTCATAAACCTACGGACTAATACAGTGTATTCAATTGACTCCATGGGACTTGGTGTTCATGATGATGTGAAAACTATTCTCAATACGTAAGTAATTAAAAGTTATTTCACATTATGTATATTCATGATGTTAACAATCCAATATCTTTGTGCATTTGTTTTGTTTAGGGCATAA

mRNA sequence

ATGGGATGTTTGGTAGCAGTTGACCCAAGTATATTAGAGGATTATGCATTCATTCATCCTGTGCAAATTTCAAGTGGCTTAGGCACTGAGGAACAACGCTCTACATTCTTGTGCAACAGGTTGATCTCGACAAAGAATAAATTGTTGATATGTTCGTATAATCCCGGATATCATTGGATGGTAGTTGTCATAAACCTACGGACTAATACAGTGTATTCAATTGACTCCATGGGACTTGGTGTTCATGATGATGTGAAAACTATTCTCAATACGGCATAA

Coding sequence (CDS)

ATGGGATGTTTGGTAGCAGTTGACCCAAGTATATTAGAGGATTATGCATTCATTCATCCTGTGCAAATTTCAAGTGGCTTAGGCACTGAGGAACAACGCTCTACATTCTTGTGCAACAGGTTGATCTCGACAAAGAATAAATTGTTGATATGTTCGTATAATCCCGGATATCATTGGATGGTAGTTGTCATAAACCTACGGACTAATACAGTGTATTCAATTGACTCCATGGGACTTGGTGTTCATGATGATGTGAAAACTATTCTCAATACGGCATAA

Protein sequence

MGCLVAVDPSILEDYAFIHPVQISSGLGTEEQRSTFLCNRLISTKNKLLICSYNPGYHWMVVVINLRTNTVYSIDSMGLGVHDDVKTILNTA

Homology

[Close]

BLAST of Cla011024 vs. TrEMBL
Match: A5AWV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-07
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 7    VDPSILEDYAFIHPVQIS-SGLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
            VD  +   +AF++P  +S +G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 1307 VDAKMAGRFAFVNPALVSKAGMGEASKESRSRVIANRLMNANHADFIFIPYNPGYHWVLV 1366

Query: 67   VINLRTNTVYSIDSMGLGVHDDVKTILNTA 93
             +  RT   Y +DS+     DD+K I+N A
Sbjct: 1367 ALETRTMIAYYLDSLEDQPSDDLKEIVNMA 1396

[Close]

BLAST of Cla011024 vs. TrEMBL
Match: A5AS16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001377 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-07
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 7   VDPSILEDYAFIHPVQISS-GLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
           VD  ++  +AF++P  +S  G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 756 VDAKMVGRFAFVNPTLVSKFGMGEASKESRSKVIANRLMNANHADFIFIPYNPGYHWVLV 815

Query: 67  VINLRTNTVYSIDSMGLGVHDDVKTILN 91
            +  RT   Y +DS+     DD+K I+N
Sbjct: 816 ALETRTMIAYYLDSLQNQPSDDLKEIVN 843

[Close]

BLAST of Cla011024 vs. TrEMBL
Match: A5AM06_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042965 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 1


Query: 7    VDPSILEDYAFIHPVQISSGLGTE----EQRSTFLCNRLISTK-NKLLICSYNPGYHWMV 66
            +D ++ E   FIHP  +S   GT     E+R+ F+ +RLI +K   L+   YNP +HW++
Sbjct: 1577 LDETLQEKIIFIHPGMVSKA-GTIAXQIEKRARFIADRLIDSKLADLVFLPYNPRFHWVL 1636

Query: 67   VVINLRTNTVYSIDSMGLGVHDDVKTILN 91
             VI+L++  VY +DS     + D+K I+N
Sbjct: 1637 AVIDLKSQIVYYLDSQLQQPYQDIKDIVN 1664

[Close]

BLAST of Cla011024 vs. NCBI nr
Match: gi|147789833|emb|CAN73872.1| (hypothetical protein VITISV_018163 [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-07
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 7    VDPSILEDYAFIHPVQIS-SGLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
            VD  +   +AF++P  +S +G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 1307 VDAKMAGRFAFVNPALVSKAGMGEASKESRSRVIANRLMNANHADFIFIPYNPGYHWVLV 1366

Query: 67   VINLRTNTVYSIDSMGLGVHDDVKTILNTA 93
             +  RT   Y +DS+     DD+K I+N A
Sbjct: 1367 ALETRTMIAYYLDSLEDQPSDDLKEIVNMA 1396

[Close]

BLAST of Cla011024 vs. NCBI nr
Match: gi|731435117|ref|XP_010645333.1| (PREDICTED: uncharacterized protein LOC104877851 [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-07
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 7   VDPSILEDYAFIHPVQIS-SGLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
           VD  +   +AF++P  +S +G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 100 VDAKMAGRFAFVNPALVSKAGMGEASKESRSRVIANRLMNANHADFIFIPYNPGYHWVLV 159

Query: 67  VINLRTNTVYSIDSMGLGVHDDVKTILNTA 93
            +  RT   Y +DS+     DD+K I+N A
Sbjct: 160 ALETRTMIAYYLDSLEDQPSDDLKEIVNMA 189

[Close]

BLAST of Cla011024 vs. NCBI nr
Match: gi|147788059|emb|CAN64843.1| (hypothetical protein VITISV_001377 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-07
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 7   VDPSILEDYAFIHPVQISS-GLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
           VD  ++  +AF++P  +S  G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 756 VDAKMVGRFAFVNPTLVSKFGMGEASKESRSKVIANRLMNANHADFIFIPYNPGYHWVLV 815

Query: 67  VINLRTNTVYSIDSMGLGVHDDVKTILN 91
            +  RT   Y +DS+     DD+K I+N
Sbjct: 816 ALETRTMIAYYLDSLQNQPSDDLKEIVN 843

[Close]

BLAST of Cla011024 vs. NCBI nr
Match: gi|731441189|ref|XP_010647538.1| (PREDICTED: uncharacterized protein LOC104878639 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 7   VDPSILEDYAFIHPVQIS-SGLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
           VD  +   +AF++P  +S +G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 100 VDAKMAGRFAFVNPALVSKAGMGEASKESRSRVIANRLMNANHADFIFIPYNPGYHWVLV 159

Query: 67  VINLRTNTVYSIDSMGLGVHDDVKTILN 91
            +  RT   Y +DS+     DD+K I+N
Sbjct: 160 ALETRTMIAYYLDSLEDQPSDDLKEIVN 187

[Close]

BLAST of Cla011024 vs. NCBI nr
Match: gi|731439093|ref|XP_010647600.1| (PREDICTED: uncharacterized protein LOC104878693, partial [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 7   VDPSILEDYAFIHPVQIS-SGLG--TEEQRSTFLCNRLISTKNK-LLICSYNPGYHWMVV 66
           VD  +   +AF++P  +S +G+G  ++E RS  + NRL++  +   +   YNPGYHW++V
Sbjct: 329 VDAKMAGRFAFVNPALVSKAGMGEASKESRSRVIANRLMNANHADFIFIPYNPGYHWVLV 388

Query: 67  VINLRTNTVYSIDSMGLGVHDDVKTILN 91
            +  RT   Y +DS+     DD+K I+N
Sbjct: 389 ALETRTMIAYYLDSLEDQRSDDLKEIVN 416

The following BLAST results are available for this feature:

BLAST of Cla011024 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AWV0_VITVI	3.3e-07	36.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1	[more]
A5AS16_VITVI	4.4e-07	36.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001377 PE=4 SV=1	[more]
A5AM06_VITVI	4.8e-06	37.08	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042965 PE=4 SV=1	[more]

BLAST of Cla011024 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147789833\|emb\|CAN73872.1\|	4.8e-07	36.67	hypothetical protein VITISV_018163 [Vitis vinifera]	[more]
gi\|731435117\|ref\|XP_010645333.1\|	4.8e-07	36.67	PREDICTED: uncharacterized protein LOC104877851 [Vitis vinifera]	[more]
gi\|147788059\|emb\|CAN64843.1\|	6.3e-07	36.36	hypothetical protein VITISV_001377 [Vitis vinifera]	[more]
gi\|731441189\|ref\|XP_010647538.1\|	1.1e-06	36.36	PREDICTED: uncharacterized protein LOC104878639 [Vitis vinifera]	[more]
gi\|731439093\|ref\|XP_010647600.1\|	1.4e-06	36.36	PREDICTED: uncharacterized protein LOC104878693, partial [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011024	Cla011024.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.310.130		coord: 42..89 score: 1.
None	No IPR available	unknown	SSF54001	Cysteine proteinases	coord: 29..88 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011024	Bottle gourd (USVL1VR-Ls)	lsiwmB205
Cla011024	Cucumber (Gy14) v2	cgybwmB043
Cla011024	Melon (DHL92) v3.6.1	medwmB162
Cla011024	Cucumber (Chinese Long) v3	cucwmB049
Cla011024	Watermelon (97103) v2	wmwmbB246
Cla011024	Wax gourd	wgowmB500
Cla011024	Cucumber (Gy14) v1	cgywmB581
Cla011024	Cucurbita maxima (Rimu)	cmawmB202
Cla011024	Cucurbita maxima (Rimu)	cmawmB386
Cla011024	Cucurbita moschata (Rifu)	cmowmB189
Cla011024	Cucurbita moschata (Rifu)	cmowmB378
Cla011024	Melon (DHL92) v3.5.1	mewmB164
Cla011024	Watermelon (Charleston Gray)	wcgwmB155
Cla011024	Cucumber (Chinese Long) v2	cuwmB042
Cla011024	Cucurbita pepo (Zucchini)	cpewmB516