Cla011010 (gene) Watermelon (97103) v1

Overview
NameCla011010
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr1 : 17341576 .. 17341755 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCACTGCAGGCAATGTTTGGACAACCGTCCTCATCGGTCAGGCACGATGCTATTAAATATGTTTACAATTCCCGCATGAAAGAAGACACCTTTGTTAGAGAACATGTTCTGGATATGATGGTCCACTTCGCTATTGCAGAAGTAAACGAGGTTGTCATAGACGAGAAGAGTTAA

mRNA sequence

ATGGACTCACTGCAGGCAATGTTTGGACAACCGTCCTCATCGGTCAGGCACGATGCTATTAAATATGTTTACAATTCCCGCATGAAAGAAGACACCTTTGTTAGAGAACATGTTCTGGATATGATGGTCCACTTCGCTATTGCAGAAGTAAACGAGGTTGTCATAGACGAGAAGAGTTAA

Coding sequence (CDS)

ATGGACTCACTGCAGGCAATGTTTGGACAACCGTCCTCATCGGTCAGGCACGATGCTATTAAATATGTTTACAATTCCCGCATGAAAGAAGACACCTTTGTTAGAGAACATGTTCTGGATATGATGGTCCACTTCGCTATTGCAGAAGTAAACGAGGTTGTCATAGACGAGAAGAGTTAA

Protein sequence

MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDEKS
Homology
[Close]
BLAST of Cla011010 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.9e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDE 58
           MDSL+ MFGQPS S+RH+AIK++Y  RMKE T VREHVLDMM+HF IAEVN   IDE
Sbjct: 95  MDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDE 151

[Close]
BLAST of Cla011010 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-12
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDE 58
           MDS + MFGQPS S+RH+AIK +Y  RMKE T VREHVLDMM+HF IA+V+   IDE
Sbjct: 95  MDSFREMFGQPSWSLRHEAIKRIYTKRMKEGTSVREHVLDMMMHFNIAKVHGGPIDE 151

[Close]
BLAST of Cla011010 vs. TrEMBL
Match: A5AVN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 1  MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDEKS 60
          M+SLQ MFG+PS   RH+A+K V NS+MK  + VREHVL M+ HF  AE+N   IDEK+
Sbjct: 18 MESLQQMFGRPSEQARHEAVKAVMNSKMKNGSSVREHVLKMIHHFNKAEINGAKIDEKT 76

[Close]
BLAST of Cla011010 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDEKS 60
           MDSLQ MFGQ S  ++HDA+KY+YN+RM E   VREHVL+MMVHF +AE+N  VIDE S
Sbjct: 94  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS 152

[Close]
BLAST of Cla011010 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 84.0 bits (206), Expect = 9.9e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDE 58
           MDSL+ MFGQPS S+RH+AIK++Y  RMKE T VREHVLDMM+HF IAEVN   IDE
Sbjct: 95  MDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDE 151

[Close]
BLAST of Cla011010 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDE 58
           MDSL+ MFGQP  S+RH+A+KY+Y  RMKE T VREHVLDMM+HF IA+VN  +I+E
Sbjct: 95  MDSLRGMFGQPEWSLRHEAVKYIYTKRMKEGTSVREHVLDMMMHFNIAQVNGGLIEE 151

[Close]
BLAST of Cla011010 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 8.4e-13
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDE 58
           MDSLQ MFGQ S  ++HDA+KY+YN+RM +   VREHVL+MMV+F +AE+N  VIDE
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNDGALVREHVLNMMVYFNVAEMNGAVIDE 151

[Close]
BLAST of Cla011010 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 

Query: 1   MDSLQAMFGQPSSSVRHDAIKYVYNSRMKEDTFVREHVLDMMVHFAIAEVNEVVIDE 58
           M+SL+ MFGQP  S+RH+ IKY+Y  RMKE T ++EHVLDMM+HF I EVN   IDE
Sbjct: 95  MNSLKGMFGQPKWSLRHETIKYIYTKRMKEGTSIKEHVLDMMMHFNIFEVNGGAIDE 151

The following BLAST results are available for this feature:
BLAST of Cla011010 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI6.9e-1471.93Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI6.4e-1266.67Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A5AVN4_VITVI6.0e-1057.63Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1[more]
BLAST of Cla011010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072276|ref|XP_008464721.1|5.8e-1466.10PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo][more]
gi|299474487|gb|ADJ18449.1|9.9e-1471.93gag/pol protein [Bryonia dioica][more]
gi|778697615|ref|XP_011654359.1|2.2e-1366.67PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659113933|ref|XP_008456826.1|8.4e-1363.16PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|659086056|ref|XP_008443743.1|5.4e-1263.16PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011010Cla011010.1mRNA