Cla011001 (gene) Watermelon (97103) v1

Overview
NameCla011001
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 17671091 .. 17671363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGCCCTCAAGACAATTGCAAAACCGAGGTCAAAATGGAACACATCCCCGAAGGGTATCAAGACGTTAGCGCTGACTTGCCTGATCATCAAGGCCCATCTCTGGTTGTACTTCATCAAGAGGTCTCTCCTTCCAACAACACATGATGCCTCGATCTCAAGAGATAGAGTAATAGCCATATACTGCATCATGCGGGAAATTCAGTTAGATGGTAGTCGCATCATAGCACCACAGATAACGAGGATCTTCTTCAAGCCAAGAGGTTAG

mRNA sequence

ATGGAAGATGCCCTCAAGACAATTGCAAAACCGAGGTCAAAATGGAACACATCCCCGAAGGGTATCAAGACGTTAGCGCTGACTTGCCTGATCATCAAGGCCCATCTCTGGTTGTACTTCATCAAGAGGTCTCTCCTTCCAACAACACATGATGCCTCGATCTCAAGAGATAGAGTAATAGCCATATACTGCATCATGCGGGAAATTCAGTTAGATGGTAGTCGCATCATAGCACCACAGATAACGAGGATCTTCTTCAAGCCAAGAGGTTAG

Coding sequence (CDS)

ATGGAAGATGCCCTCAAGACAATTGCAAAACCGAGGTCAAAATGGAACACATCCCCGAAGGGTATCAAGACGTTAGCGCTGACTTGCCTGATCATCAAGGCCCATCTCTGGTTGTACTTCATCAAGAGGTCTCTCCTTCCAACAACACATGATGCCTCGATCTCAAGAGATAGAGTAATAGCCATATACTGCATCATGCGGGAAATTCAGTTAGATGGTAGTCGCATCATAGCACCACAGATAACGAGGATCTTCTTCAAGCCAAGAGGTTAG

Protein sequence

MEDALKTIAKPRSKWNTSPKGIKTLALTCLIIKAHLWLYFIKRSLLPTTHDASISRDRVIAIYCIMREIQLDGSRIIAPQITRIFFKPRG
Homology
[Close]
BLAST of Cla011001 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.5e-07
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 1  MEDALKTIAKPRSKWNTSPKGIKTLALTCLIIKAHLWLYFIKRSLLPTTHDASISRDRVI 60
          +E ALK +  P +  + +P G   L    L  +A +WL F+K+ ++PT HD +IS +RV+
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AIYCIMREIQLD 73
           +YCIM+EI ++
Sbjct: 78 LVYCIMKEILVE 89

[Close]
BLAST of Cla011001 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 1  MEDALKTIAKPRSKWNTSPKGIKTLALTCLIIKAHLWLYFIKRSLLPTTHDASISRDRVI 60
          +E ALK +  P +  + +P G   L    L  +A +WL F+K+ ++PT HD +IS +RV+
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AIYCIMREIQLD 73
           +YCIM+EI ++
Sbjct: 78 LVYCIMKEILVE 89

The following BLAST results are available for this feature:
BLAST of Cla011001 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P0_CUCSA9.5e-0738.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
BLAST of Cla011001 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199714|gb|KGN54872.1|1.4e-0638.89hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011001Cla011001.1mRNA