Cla010995 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010995
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gag/pol protein (Fragment) (AHRD V1 -- E2GK51_BRYDI)
Location	Chr1 : 17834855 .. 17843634 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACGAGCCATGCTTTGGGGAGTCATTATAGCCACTGGGAACCCGAGCCTTGCACCCATCCTAGATGGACTGCTCACTCTTATGACTATAGTCATTTCCATGCACAACCACAATACTGCTATTGCTTCGTCGTTCCCGAGCCATTAGAGTTTGCTCAGGAGGCCAACCAAGGTATGTCATTAGAAGATATAGTTACATAATTAACTAATCGCTAGTTCTCTATGCAGCGGGAGTGTTCCTCACATTCAGGAGGATTTTCTTCATATCAAACAGGACAGTCTTCAGGTTGCACGGAGACTAAGGCTAAGATGCAGCATCTGAGTGACCAGCTCGCACAAATTGCTTACTCAGTTAGGAGATTGGAGAAGTCCGAGCTACAGCCTAATATCCTTTAGATTACTGAGGCGCCTCACCACGAGGTAATGTACCTTGATGACGAGGAGGACTAAGAGGATTCCAAGCCATGGCGACCAGTCATCCAGAAAGAAGAAGAACCCAACCTTACACCAAACGAATGTCAGGTGATAGAGTTAGAGGTCGAAAGACCTCGTCCTGTTTTGTCATCTAGTATTTCATATATTTTTTAGTTTTCTTCTTCTTGTTCTCAGGAGTCAGTTGTTAAGTCTTTGTTTTAAGTCTTTGTTTTAATTCTTTCATTTTCTCTTTTTTGCCTAATTTTAAAAAACCCAAATTCGACCTGTCTGGTTCTCTTCAAAAGATGAGAAGCCTTATAGCTTATTGGGCTATATCGACTCATCCAAGAAGGGACCAGAGAAATACAAGAATTTCTTTGTACCTTGACAGGGAACAGGTCATGTCGAGCAATCGAGTTAAAAATTTCTCCTTCCTAGAGCAAGCCAGGTGAACAAATTTACTGCTTTCCTATATTGCTTTCCTAGATTAGGTTATTGTTTTTCTTTTGTAGAGACCCCATAGAAGATGAAGATCATCATTTGGACAGGCGAGCCCTTTTACCACACCTCAAAGACCCTTGCACGAAAACACTTACAGGGGAGGTTTTCTGTTCCCTTTTCTTTATTTCATTTCTGAGCTGATTAGAGCTACATTTAGGGACAATGCATGATTTTTAAGGTGAGGGTGGTTGGGCATTTGCATAATTTTAGGCTTGATGCATATCTAGCAGACCTTGAGCATATAAGCTCGGACTTGTGTGATTTGATTGGTTGTTTGCTTTATTGCTTGTGCTCGTTCCTATGAAAGTTGATGATGCACCTTTCTTGGTTATGCTTGCATGATTTTGGGATGAAGAAATATTCATAATTTTTTAGCCCATTTGTAAAAAACATTTCTTGGCATTTGATGCATATTTAAGTGTTTTGTTGAGTCATTTTGAATCTTTGATGCCTGGAATTGAATGATCTTGCTCTGCTCTTTGTTGTCACCTCAAAAGGTCAACCTTTGGTTGGAGAGTAACCTTTCTAGATTGAATGTAATACTAGACTAGAAAAGCAAAAGAGTAATAAGCCTATGTGTCAAAAAAAAACATAAAAGAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAGAGGAAGAAGAAAAAGCCAAAAAGAGTGAAAAATAAAAGAAAAATAAATAAATAAATAAATGTGTGTGAGTGCATGGATAGGGACAAAAAAAGCTACCCCGTTATGATTAGTTAGGACGCCCGCGAGAAAAAAGTGGGTATGAGTCCCTACAATGGGTGTGTGAAAGCTAGTAGCTCTAAGTAAAATTGATGCCCTTTACTTTTTAGTTGTGCGTGAGTTAGGCACCCTAGTTGAAGTATTGCCCTTTTGATGAGTTTAGGTAGCTTGAAGGCCAATAACCGAGCAAGAGACAAGGGAAAACAAATTTAGAGTTTTATAAAACCTTTTTGAACATGCTTAGAGTTAAAATAATGAAGCTTTGTACTCACTCATGCATGACTTAACTTGAAAACTATTAAAACTAGAGTAGCGAGCCTTGTAATTAAGCAATCATATTATTGATGCATGACTATGTGTTTTTGCCTTGCTTAGAACGACCAAGAATTAAGTTGGGGATGATTCGATAACACCATAACAATGCTATTTTTCCTAGCTTAATTCGGGCTCGTTCATGGATTTTATGTGTTTATTATGCTATTTTATAGGGATTTGAGCAAATCATGCATAACGGAGTGTCACGGGCAATTTGGGATCGATTTGGAGCTATCATAAGTGAAATTGGACACCTGGAGCTCAAAGACGGGAAAAAGAACGAAAATGCCCTTGGAGAGCGCAACTATGCGGAGCATTACACTCAGCTTTACGTTGAAGGCCCGAGAACTGAAATTGCAAGAGTGCAGTGATGCTCCCTCGGAGCGTAGTTGCACTTCAGATTTTGACGGACATACGAAGATGCACGCACGCCGAAGCGCAGCACACAGCATCGCTACGCTCTAGGTACGTGCTCCAACTTCTACCTAGACTGTTGCGACGCTCTACCCGATTTTATATATATTCTCTTCATTCTTTCAGGGTTTTTAGGTGGTTGGATCCATGGAGGCCGAGGAGTTCTCTAAAAATTATTTTTCCCCTTAATATTTCTAGCACTTTTAGCTTAGGATTTTGATTTTATTTTGGGTTGTAGCCATGAAATATGCTCTCTTCTTCAATTTCTTTGTCTATGAAGATGTTGAGGTAAGTGTTTTCTTGTTCTTCAAAGAAAAATCCTATATAATTACTTCATACCTCCATTTTTGTATAAATTTCATATTATGGTTGTGCTTCTTTGAATCTTGTGTAAATGTAGATGTATGTTTTTGGATGGATTAACGCCCCCTGCCCTGAATGTATGTCTTGGCTAATCAATTCTGCTCATGTGTGTCCTTTGTATTTGTCTATGCTTAAAATAAACAAGTAGTAAGGGTCTTAGTATGCATGCTAGGTGTACTGGCTGTCCATGAGCTTAGAATGTATGCTTAACCTAGGTTCAATGAAAATCAGATTAATTAAGTTAGGGCTTTCCCATTAATTAATCGCGCACTGGAACTCATAAGCTCAATGCACTTGTTCTTGGCCTTAATTGATCGCTATTGAATCCAATTAAGACCCAAGGCTTGTAGTTCAATTGAGGCTTGGGCTTTAATTGATAATTAGGGTGCTTGTTTATCTTAATTTGATTTGTTTGTTGTGTGTAGCGTTGGCGAATTTAATTAAGTTAAATAGGTCGGTGTGTAAGCAATCTAATATGTGTTTCATAAAAAATAAGTCAGTATTAGAAATTGCTTAAGAATCCAATTGCTTTCGAGAACTTCATTATCTTATCCTTGTTTACATTTACTCATTGCTTTTAATTTCTTGTGCATGCCTAGTTCTAATTCACACCACCCTCCCCCCCTCCCCCCCAATTTATCGCTATAATTAGGAAATTAGCTTAACGAAACAAAGACTATTGTCCCTGTGGTTCGACCTGAACTTGAACTATTGCTACGCCATCGTAGTAATAGGAGTAGGATTCGGTATTATAAATTTCTTTTGATCGCATTCTTTTTGGAAATTTAAAACGACACCGAAAAAATTGTGTTATCACTCACTTTTAATTAATTTAACTTAATTAAATGAATTAAATGCAATTAATCAATTAATAATAATTAATGTATTTAATTAAATATCTCATATTTAATTAAATGTATAATTCAATTAATTAATTAATTAGCATATTTAATTAAATAGCTCATGTTTAATTAAATGTATATTTGAAACATATTCAAATGATTATTTCTCCTCTAACCTATAAATTTAATATAAATCTTACTCACATTATATTTTAACCTATAGTTTTAATATAAATATAATTCATATCAATTAATTAGCCTATAATTTTAAAATGAATCTTATTCCTATTAAATTGTTAACCTATAGTTATAATATGAATCATATTCATATTTCAAAAAACAAAATATGAATCTTATTCATAATAATTTAATATTTGACTCATTCAAATATGTTGAGTCTCCTTTTTATTGTATTGTTTAATTTTGAATTTCATTCAAAATTAACTTTATATTATATTGTATCTATATACATTATATTAATTGTATCATATACAATTAATGTTATTCCTTTAAATAATTTGAACAATTCAAATTCTTTCAAAACTAATGGTCCTTGTTTACCCGTTGTGAGCTAGTAGGGAGATCTAATGGACCTACATAATAGAAGATTCAATGACTCGAGATTAACTAATTGAACTCTTTAATTGTGTTAATCAACCACTGTGGGTTAACTCCACTAAAGACCCATAGCTGCACTTTTCACATTGTAGAATATTTTTGCGTCGATGGATTTAACCATTACAGTAAGTTGATCCTTCATGAGCAGTTTGTAATTACAGTTTGGTCAAATTACTGTTTTACTCCTGTAATTACCTCTTTCTCCTTACATACCACTAATCCCTCTAATGAACAATATGTTTATGGTTCTACCATAAACCAAGTCCCTCTCGAGCCAATGAGAGGGTGAGTACCCTTTGTTCAAGACCTAGAGTCAGCACTTTAGGGAACTACTCCTCTACTTACCGTAAACGTGGGAAGGAGTGAATTCCATCTTGTGTAGTTATGTTTCTAGCTCCATATTCGATCTTGTCCCCAAAATGGTAGGCTTTTCGAGTTGGCTACTCAAGCCACTCTCATCCATACAAATAAAAGGACAGGCCCTTATAGGCAGGAGTTCATAACTCACTCATAATAAAGATCGAGTTACATATGACTATCCTATGAAAAATTAATCTCTTCAGTCAACGGTGTTACAAAGAGAGATTAAATATTTTGTAGTTTAGTATACAATCTCATTGTATAAGATACCCCACTCGCATGTCTACACAAACGATTTAGATCACATTGTTTGTAACACTTACAAAATGGGTCGTATCCATAGTGTTACTAGGATAAGATATCCAACCTTATGAAAGGATTAGACCCCAATAGCGATTGATCGCTTTTGTCTTTGAATTGGGATTGGGAAAAACAAAATAACTTTTTAGAAAACTGGATTAAGCATAAAAAATAATAATAAAAAAAAGGGTAAATTTACCTCAAGAAGCACTTTTTTTCAAGAAAAATAGTGACTTTTCTCCTATGAAATCCTTCAACAACAACACCAATTCGAAAACTTTGCTATATCTCACAGAAAGATAAAAAGATTATGTGATCCTTCTTCCTTTTGCAGGGAATTGAGAGAAGGAAAAAAAAGTTTCATGAGAGAGATCTTGAGAGAATAGAGAGAGCACAAAAACAAATTGTCGACCTCTATTTTAATTCTCTCTATTTTCTATCACCCCGTAGAGAAAAGAACGTGAGGGAAATAACTTCCCCTCACCCCACTCTCCACTTCCCTACAAAAATGCAGGGGAGTTTTTTATTTAATTTATTATTATTATTATTATTATTATTAACTTAGATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCATTATTGATTGTTTTTGTTTGTTTTGTCTTAATAACCCTAAATCCAATAAACTAATACTCTAAGTTGTTTTATGAGTCTTGAATTGTATGTGGGGACATATGGAGATCAATGTTCAAGATATAGTCTAAAGGGTCTATAGTATAAAGATAAGATTGGGTACCTTATCCTGATGACACTATGGATACGACCCACTTTATATTTGATACAAACGCAATGATTTAATACATTCGTGTAGGTGACATGCAAGTGGGGGTATCCTATGCAATGAGTTTGTATAAGACGGACCATGAAATAGTGATCACTAGATGTAACTCCGTTGACTAGTTAGGTTTCTATTTCAATAGATTGACCTAGGCAACTTAGTCTTAATCTTGAGTATATTATGAACTTTTATCCACGAGGGATTGTTCTTTGATTTTTATGGGTGAGTGTGGCCATTTGTAGGGGCAGCTTAACTCGACTCGCCTGGTGGCTTGGTTCACGAGGTTTAGCTTCAGTTCATGCTATTCGGCTCCGGTTCTCGTGATTCGGCTCTAGTTCACACGATTCGGCTCCAATTCAGTCATTTTGGCTTCGGTTTAGCTCCTGTTTGGTCTAGTTCAACTGTTTTTGATTTGGTTCTTAACATTTTCTGCTTGGTTTGTGGTTTTGAGGCCCTGTTCGAAGCGGTTCAAGGGATTTTGGTTCGATTTTGGAGCGGTAGAAACAATTTTATGATATTTTTATCATAAATTAATGTAAATTTATTGCTTTATTTTATCCTAGGGGCCAATTTTACCGATTCAATTGCTATTTAAATTCTTTATGATTGTCATTTAGTGATACCCCATCATAGGTTAAGCATGTTTATGCATTTTAGTATATTATAAACATTATAATATATGGTTTTAATGCATGATAAATTTCATGAGTTATTTAATGTATGTTGATGTATCAAATATATGAAATTGGAAAAAGCATGATGCATGACATTAATTAAATAAATATAAATAGTTAGATTTATTAATGTTTTGTTAATACTTGATTGATTTCCATGATTTATGTAATATAAGTGTTATATTTTAATTGAAAATCAATTTGCATTGAGCATGACACATCCATAAATTAATATAATTGTTATATTATGTCATGAAATGCATGTAATATGGTTGGTTAATTAATTAGAATTTTATTGTTAATTAATTAAACCATAGAAAGTATGTTATAGGGCTAATCATTAAATAGAAATCATGATTATGGGGCTAATCATTAAAATTTGTAATAGTTATAAAATTTATGGTTAATAATTATCAACCTATAATTAAGAATTGCATGCAAACATAGGATCTTAGGAAATTGGTTTTGAATTGTTTAAAATTAATTTAGACCTAAGATCACATTAATTCTAATAAGATTAGAATCTTGTCTTAATTTGTAATAAAATAGTTTTAAAATATGTCTAAGTAGGACAAATAGGACTTTAGGTTATTAAGGAACTCTACCACTTCAGTTATGTCAAGATTGGGGTATTTAAGTTGACGGTTTATGGAACACCTCCTAACTTGGAATTGAATTGGAACCTGAGTTCAATTAATCTAAGACCTATTAGCATGCATTGTCACTAGGTGAATTAAATGATTTAATTCATCTAGTACATTAGTTAAAGACATTTTATAAGAGTTATAATAGGTATAGACTTACATAGATTGACTTAGCCAAATTTATCTAAGTTAAATAACTCTGGGATACGGTAGGACATTTTAGTGTGAGGAAAATTACAAAACAAAATATTTTATATTAAGTTTTACTCCTACATCCCTGATTATTCACACCATGAGATCCATACTCGGCTTCATGTTGCCCTGGGTGCAGCCTCCTTTCGGAAAGTGTTTGTATGGATCAATAACAAGGTGAATGGGAAAATGTCTATAGTAAGTGGGAGCGGGACGCATGTTAACGTATCCCTCGGTCTCTAACCCTCGGTCGCATCATAAGATTCTTATGATCCGCCTGCATGTCATCCTGGAGTGACCATCCCTTCGGAGGGCCTAATCATAGGTTTCAAAACACCACGAACTCCTGAAAAGGATAGGTCCACTTAGATTAATTACCAACAATTGTCTTTCCTAACGGTAGCTTGTTGGTGTGTATCTCTAGGATCTAAAAGTGGGAGGGTTACACTTATGGGGATGAGTTAAGAGTTAACGAATCTTTTACCAAACAATTGTGGCTAATGTCTATAGGAATATGAGTTATTCTAGCATTAGAATTAGCTGAGAATTTTCTCATTTCAAAAGAGGAGTGGCTAATCACCCTTCAGTAACTGTTGCTCTAAACCTCTGAAGTATCGTTGCAACAACTAAATCAATAGTTTATTAGGGTTTCTTTGATTACTTGTTTTTGCTGAATTGATTGGATTACTTGCAATTTTGTTTCCTTGTGTAATGGGTTAAAACAAAGATAACTAAAACGATTAATTGTTTATTATTTCAGCATGTCTTCCTCAATCGTCACAATGCTTAAAAATGAAAAACTAACCAGTGAAAACTACACAACGTGGAAATCTAACATGAATACGATTCTGGTTATAGATAATCTACGGTTTGTCTTAACGAAGAAGTGTCCTCCTATCCCCGCTCGTAATGCATCCCAATCTATTAGGGATGCACATGACCATTGGACAAAGGCCCATGACAAGGCCCGAGTCTGTATCTTGGCGAGTTTGTTTGATCTACTTAATAAGATACATGAGACCATGATGAATGCACTACATATCATGGAGTGCCTCCAGGAAATGTTTGGACAACCATCCTCACAGATCTGGCAGAGGCCCTCAAGTACGTTTACAATGCACGTATGAAGAAAGGCAATCGATGAGAGAACATGTTCTCAACCTAATGGTCCAATTCAACGTTGCTGAAATGAACGATGCGGTCATTGATAAGCAAAGTCAGGTGTCTTTTATTCTAGAATCTCTTTCGAAGAGCTTTCTTCAATTCTGCAGGAATGAGAGGCAAATGTTGCTCATTTCAAGAAATTCCACAAGGGTTCATCCTCTAGAACTAAGTCTGTTCCCTAATCTTCTAGTTCTAAGATGA

mRNA sequence

ATGTTAACGAGCCATGCTTTGGGGAGTCATTATAGCCACTGGGAACCCGAGCCTTGCACCCATCCTAGATGGACTGCTCACTCTTATGACTATAGTCATTTCCATGCACAACCACAATACTGCTATTGCTTCGTCGTTCCCGAGCCATTAGAGTTTGCTCAGGAGGCCAACCAAGGACAGTCTTCAGGTTGCACGGAGACTAAGGCTAAGATGCAGCATCTGAGTGACCAGCTCGCACAAATTGCTTACTCAGTTAGGAGATTGGAGAAAGACCCCATAGAAGATGAAGATCATCATTTGGACAGGCGAGCCCTTTTACCACACCTCAAAGACCCTTGCACGAAAACACTTACAGGGGAGCAAGTACGTTTACAATGCACGTATGAAGAAAGGCAATCGATGAGAGAACATGTTCTCAACCTAATGGTCCAATTCAACGTTGCTGAAATGAACGATGCGGTCATTGATAAGCAAAGTCAGGTGTCTTTTATTCTAGAATCTCTTTCGAAGAGCTTTCTTCAATTCTGCAGGAATGAGAGGCAAATGTTGCTCATTTCAAGAAATTCCACAAGGGTTCATCCTCTAGAACTAAGTCTGTTCCCTAATCTTCTAGTTCTAAGATGA

Coding sequence (CDS)

ATGTTAACGAGCCATGCTTTGGGGAGTCATTATAGCCACTGGGAACCCGAGCCTTGCACCCATCCTAGATGGACTGCTCACTCTTATGACTATAGTCATTTCCATGCACAACCACAATACTGCTATTGCTTCGTCGTTCCCGAGCCATTAGAGTTTGCTCAGGAGGCCAACCAAGGACAGTCTTCAGGTTGCACGGAGACTAAGGCTAAGATGCAGCATCTGAGTGACCAGCTCGCACAAATTGCTTACTCAGTTAGGAGATTGGAGAAAGACCCCATAGAAGATGAAGATCATCATTTGGACAGGCGAGCCCTTTTACCACACCTCAAAGACCCTTGCACGAAAACACTTACAGGGGAGCAAGTACGTTTACAATGCACGTATGAAGAAAGGCAATCGATGAGAGAACATGTTCTCAACCTAATGGTCCAATTCAACGTTGCTGAAATGAACGATGCGGTCATTGATAAGCAAAGTCAGGTGTCTTTTATTCTAGAATCTCTTTCGAAGAGCTTTCTTCAATTCTGCAGGAATGAGAGGCAAATGTTGCTCATTTCAAGAAATTCCACAAGGGTTCATCCTCTAGAACTAAGTCTGTTCCCTAATCTTCTAGTTCTAAGATGA

Protein sequence

MLTSHALGSHYSHWEPEPCTHPRWTAHSYDYSHFHAQPQYCYCFVVPEPLEFAQEANQGQSSGCTETKAKMQHLSDQLAQIAYSVRRLEKDPIEDEDHHLDRRALLPHLKDPCTKTLTGEQVRLQCTYEERQSMREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRNERQMLLISRNSTRVHPLELSLFPNLLVLR

Homology

[Close]

BLAST of Cla010995 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 129 EERQSMREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRNERQMLLISRN 188
           +E  S+REHVL++M+ FN+AE+N   ID+ +QVSFIL+SL KSF+ F  N     +    
Sbjct: 123 KEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNL 182

Query: 189 STRVHPLELSLFPNL 204
           +T ++  EL  F NL
Sbjct: 183 TTLLN--ELQRFQNL 195

[Close]

BLAST of Cla010995 vs. NCBI nr
Match: gi|659113937|ref|XP_008456829.1| (PREDICTED: uncharacterized protein LOC103496667 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 130 ERQSMREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRNERQMLLISRNS 189
           E  S+REHVLN+MV FNVAEMN AVID+ SQVSFILESL +SFLQF  N     +    +
Sbjct: 24  EGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLT 83

Query: 190 TRVHPLELSLFPNLLVLR 208
           T ++  EL  F +L+ ++
Sbjct: 84  TLLN--ELQTFESLMKIK 99

[Close]

BLAST of Cla010995 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 134 MREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRNERQMLLISRNSTRVH 193
           +REHVLN+MV FNVAEMN AVID+ +QVSFILESL +SFLQF  N     +    +T ++
Sbjct: 128 VREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAYTLTTLLN 187

Query: 194 PLELSLFPNLLVLR 208
             EL  F +L+ ++
Sbjct: 188 --ELQTFESLMKIK 199

[Close]

BLAST of Cla010995 vs. NCBI nr
Match: gi|659082068|ref|XP_008441651.1| (PREDICTED: uncharacterized protein LOC103485734 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 130 ERQSMREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRN 179
           E QS++EHVL+++V FN+ E+N AV D++SQVSFIL+SL KSFLQF  N
Sbjct: 85  EGQSVKEHVLDMIVYFNIVEINGAVFDEKSQVSFILKSLPKSFLQFRSN 133

[Close]

BLAST of Cla010995 vs. NCBI nr
Match: gi|659118732|ref|XP_008459275.1| (PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 129 EERQSMREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRNERQMLLISRN 188
           ++ QS+++HVLN++V FNV EMN  V D++SQVSFIL+ L KS LQF  N  +M  I  N
Sbjct: 112 KDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQF-NNNAEMNKIKYN 171

Query: 189 STRVHPLELSLFPNL 204
            T +   EL  F +L
Sbjct: 172 MT-IFLNELQTFQSL 184

[Close]

BLAST of Cla010995 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 59.3 bits (142), Expect = 9.1e-06
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 129 EERQSMREHVLNLMVQFNVAEMNDAVIDKQSQVSFILESLSKSFLQFCRNERQMLLISRN 188
           +E  S+REHVL++M+ FN+AE+N   ID+ +QVSFIL+SL KSF+ F  N     +    
Sbjct: 123 KEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNL 182

Query: 189 STRVHPLELSLFPNL 204
           +T ++  EL  F NL
Sbjct: 183 TTLLN--ELQRFQNL 195

The following BLAST results are available for this feature:

BLAST of Cla010995 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	6.4e-06	45.33	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]

BLAST of Cla010995 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113937\|ref\|XP_008456829.1\|	1.0e-09	53.85	PREDICTED: uncharacterized protein LOC103496667 [Cucumis melo]	[more]
gi\|659113933\|ref\|XP_008456826.1\|	2.6e-08	52.70	PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo]	[more]
gi\|659082068\|ref\|XP_008441651.1\|	2.2e-07	63.27	PREDICTED: uncharacterized protein LOC103485734 [Cucumis melo]	[more]
gi\|659118732\|ref\|XP_008459275.1\|	1.4e-06	49.33	PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo]	[more]
gi\|299474487\|gb\|ADJ18449.1\|	9.1e-06	45.33	gag/pol protein [Bryonia dioica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010995	Cla010995.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010995	CmoCh18G006000	Cucurbita moschata (Rifu)	cmowmB378

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010995	Cucumber (Gy14) v1	cgywmB345
Cla010995	Cucumber (Gy14) v1	cgywmB581
Cla010995	Cucurbita maxima (Rimu)	cmawmB202
Cla010995	Cucurbita maxima (Rimu)	cmawmB386
Cla010995	Cucurbita moschata (Rifu)	cmowmB189
Cla010995	Melon (DHL92) v3.5.1	mewmB160
Cla010995	Watermelon (Charleston Gray)	wcgwmB155
Cla010995	Cucumber (Chinese Long) v2	cuwmB042
Cla010995	Cucumber (Chinese Long) v2	cuwmB059
Cla010995	Cucurbita pepo (Zucchini)	cpewmB516
Cla010995	Bottle gourd (USVL1VR-Ls)	lsiwmB205
Cla010995	Cucumber (Gy14) v2	cgybwmB043
Cla010995	Cucumber (Gy14) v2	cgybwmB059
Cla010995	Melon (DHL92) v3.6.1	medwmB156
Cla010995	Melon (DHL92) v3.6.1	medwmB168
Cla010995	Silver-seed gourd	carwmB0051
Cla010995	Cucumber (Chinese Long) v3	cucwmB049
Cla010995	Cucumber (Chinese Long) v3	cucwmB067
Cla010995	Watermelon (97103) v2	wmwmbB246
Cla010995	Wax gourd	wgowmB500