Cla010993 (gene) Watermelon (97103) v1

NameCla010993
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGypsy-like retrotransposase (AHRD V1 *-*- B0F6T3_CUCSA)
LocationChr1 : 17885520 .. 17885984 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACATTGCATTCATGCTTCAAGTTTTATCAAGATAGCATTAAGAAGGTTGAAGCAGACTTTAATCATTTCTCAGAAGTCGACTCTCACTTCGCAGACGCAAAGTTTTACCTTAAGAATGATAACATCAGTGAGGCAATGCCCGCAGAGATTCCTCGAATAAAAAATGAGGATAAATCTCAGTTAAAGCCACAAACAGATGCAAGAAAGGAACCAAGGGAAGAGATGGATACCTCTAACTCTCAAAAGGGCGAGGCATCCACTAACTCTGCGAAGCCTAAAACCTTGAAAGATGAAAAAGTTACGAGTTCTCCAGTCTTGCGCTTTGTTTCATTGTCAAGACGTAAGAAGGGAGAGTCTCCATTTGTAGAGTGCTCGAAGGGCTTGAAGGTTGGCGACGTTGAAATCCTAAAAGAAGGTTTCGTTACGTCCCTTACTAGGATCACAAAGCAAGAAGTGTGA

mRNA sequence

ATGTCAACATTGCATTCATGCTTCAAGTTTTATCAAGATAGCATTAAGAAGGTTGAAGCAGACTTTAATCATTTCTCAGAAGTCGACTCTCACTTCGCAGACGCAAAGTTTTACCTTAAGAATGATAACATCAGTGAGGCAATGCCCGCAGAGATTCCTCGAATAAAAAATGAGGATAAATCTCAGTTAAAGCCACAAACAGATGCAAGAAAGGAACCAAGGGAAGAGATGGATACCTCTAACTCTCAAAAGGGCGAGGCATCCACTAACTCTGCGAAGCCTAAAACCTTGAAAGATGAAAAAGTTACGAGTTCTCCAGTCTTGCGCTTTGTTTCATTGTCAAGACGTAAGAAGGGAGAGTCTCCATTTGTAGAGTGCTCGAAGGGCTTGAAGGTTGGCGACGTTGAAATCCTAAAAGAAGGTTTCGTTACGTCCCTTACTAGGATCACAAAGCAAGAAGTGTGA

Coding sequence (CDS)

ATGTCAACATTGCATTCATGCTTCAAGTTTTATCAAGATAGCATTAAGAAGGTTGAAGCAGACTTTAATCATTTCTCAGAAGTCGACTCTCACTTCGCAGACGCAAAGTTTTACCTTAAGAATGATAACATCAGTGAGGCAATGCCCGCAGAGATTCCTCGAATAAAAAATGAGGATAAATCTCAGTTAAAGCCACAAACAGATGCAAGAAAGGAACCAAGGGAAGAGATGGATACCTCTAACTCTCAAAAGGGCGAGGCATCCACTAACTCTGCGAAGCCTAAAACCTTGAAAGATGAAAAAGTTACGAGTTCTCCAGTCTTGCGCTTTGTTTCATTGTCAAGACGTAAGAAGGGAGAGTCTCCATTTGTAGAGTGCTCGAAGGGCTTGAAGGTTGGCGACGTTGAAATCCTAAAAGAAGGTTTCGTTACGTCCCTTACTAGGATCACAAAGCAAGAAGTGTGA

Protein sequence

MSTLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDKSQLKPQTDARKEPREEMDTSNSQKGEASTNSAKPKTLKDEKVTSSPVLRFVSLSRRKKGESPFVECSKGLKVGDVEILKEGFVTSLTRITKQEV
BLAST of Cla010993 vs. TrEMBL
Match: A5C5C0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-11
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1

Query: 15  IKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDKSQLKPQTDARKEP- 74
           +KKVE D   F++V+S+FADAKFY++ND + E +P  IP   +  K++LK + +  K   
Sbjct: 95  VKKVEVDTKPFTKVESYFADAKFYIENDVMEEVLPTIIP---STXKAKLKGKVEQCKSTL 154

Query: 75  REEMDTSNSQKGEASTNSAKPKTLKDEKVTSSPVLRFVSLSRRKKGESPFVECS-----K 134
            E++      + E    S++  T+    V +SPV + +  SRR +G+ PF+E       +
Sbjct: 155 AEKISQPMMNRIEEKGKSSQTATMDLMIVXTSPVFKCIPRSRRSEGQPPFIEDKSEVQPR 214

Query: 135 GLKVGDVEILKE 141
            L+ GD+++LKE
Sbjct: 215 RLENGDLQVLKE 223

BLAST of Cla010993 vs. TrEMBL
Match: A5B9U3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003694 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1

Query: 2   STLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIP 54
           STLH CFKFY+  +KKVE D   F+EV+S+F DAKFY++ND + E +PA IP
Sbjct: 122 STLHQCFKFYKGGVKKVETDAKPFTEVESYFVDAKFYIENDAMEEVLPAIIP 173

BLAST of Cla010993 vs. TrEMBL
Match: M5WXF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020726mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 1

Query: 2   STLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDKS 61
           STLH CFKFY+  +KK+  D   F+E +S+F DAKFY+  D  SE +P E   + +  K+
Sbjct: 815 STLHQCFKFYRGGVKKILGDVKPFTEAESYFTDAKFYIDEDMASEVIPVE---VHSTGKA 874

Query: 62  QLKPQTDARKEPREEMD------TSNSQKGEASTNSAKPKTLKDEKVTSSPVLRFVS 113
             +    ++  P EE D      TS+ Q G +S +S K            PVLR+VS
Sbjct: 875 IPRRDEHSKCPPIEENDDMQLKSTSSRQMGSSSIDSQK---------VPIPVLRYVS 919

BLAST of Cla010993 vs. TrEMBL
Match: A0A0K9RSA4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040670 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 48/143 (33.57%), Postives = 66/143 (46.15%), Query Frame = 1

Query: 2   STLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRI------ 61
           STLH CFK+Y++  +KV AD   FSE +SHFADAKFY       E MP EI         
Sbjct: 172 STLHQCFKYYRNGERKVNADVKPFSEAESHFADAKFYASQGEPVEVMPTEIASTGKVMPK 231

Query: 62  KNEDKSQLKPQTDARKEPREEMDTSN-----SQKGEASTNSA-----------KPKTLKD 121
           K +   + KP  +A +   E +D        SQ+ E +  SA           K  TL  
Sbjct: 232 KLQSTVEEKPSRNALEPSHETVDEKKTKEIPSQRVEENPRSAVTVKDMPQEFDKSMTLPV 291

Query: 122 EKVTSSPVLRFVSLSRRKKGESP 123
            K++   +L   + +  K  E+P
Sbjct: 292 HKISDPKILTSPTPNSTKSPETP 314

BLAST of Cla010993 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-09
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1

Query: 97  LKDEKVTSSPVLRFVSLSRRKKGESPFVECSKGLKVGDVEILKEGFVTSLTRITKQEV 155
           LKDE  ++  VL +V  SRR KGES FVE  K LKVGD+++LKE F T LT+I KQE+
Sbjct: 3   LKDENASNPSVLHYVPPSRRMKGESSFVESPKDLKVGDIKVLKESFTTPLTKIMKQEI 60

BLAST of Cla010993 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 5.1e-46
Identity = 99/153 (64.71%), Postives = 111/153 (72.55%), Query Frame = 1

Query: 2   STLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDKS 61
           STLH CFKFYQD +KKVEAD N FSE +SHFADAKFY KN+NI E +PAE P  K ED S
Sbjct: 328 STLHQCFKFYQDGVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNS 387

Query: 62  QLKPQTDARKEPREEMDTSNSQKGEASTNSAKPKTLKDEKVTSSPVLRFVSLSRRKKGES 121
           QLK    A  EP E   T NS KGE  T + K   LKDE   ++PVLR+V LSRRKKGES
Sbjct: 388 QLKSL--ATTEPHESARTFNSGKGETYTRNTKGMILKDENAANTPVLRYVPLSRRKKGES 447

Query: 122 PFVECSKGLKVGDVEILKEGFVTSLTRITKQEV 155
           PF+E  KGLKVGD+EI+KE F T LT+I KQEV
Sbjct: 448 PFMESPKGLKVGDIEIIKESFTTPLTKIAKQEV 478

BLAST of Cla010993 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-29
Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 1

Query: 2   STLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDKS 61
           STLH CFKFY+  IKKV+AD   F++ +SHFADAKFY K++++SE +  E+P  K   K+
Sbjct: 630 STLHQCFKFYKQGIKKVDADSRPFTKAESHFADAKFYTKSEDVSEIISTEVPVTKGTFKN 689

Query: 62  QLKPQTDARKEPREEMDTSNSQKGEASTNSAKPKTLKDEK-------VTSSPVLRFVSLS 121
           + +  T  +     + D  NSQ    ST   K +T + EK       V++ PVLR++ LS
Sbjct: 690 EQEMITSKKS---NKGDALNSQHNGESTTETKLRTPEAEKIATLRKEVSNPPVLRYIPLS 749

Query: 122 RRKKGESPFVECSKGLKVGDVEILKEGFVTSLTRITKQE 154
           RRKKGESPF ECSK L V + EILKE F   L +I K E
Sbjct: 750 RRKKGESPFAECSKNLTVKNTEILKENFTAPLAKIEKGE 785

BLAST of Cla010993 vs. NCBI nr
Match: gi|778697752|ref|XP_011654390.1| (PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = 1

Query: 1   MSTLHSCFKFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDK 60
           +S LH CFKFY+  ++K++ D   FS+ +SHF DAKFY K+D++SE + +E+P  K+  K
Sbjct: 72  ISMLHQCFKFYKQGVRKIDTDTKPFSKAESHFVDAKFYTKDDDVSEFISSEVPVAKDTYK 131

Query: 61  SQLKPQTDARKEPREEMDTSNSQKGEASTNSAKPK----TLKDEKVTSSPVLRFVSLSRR 120
            +    T  +    + +   N+ +      S  PK    TL  EK T  P+LR+V LSRR
Sbjct: 132 LEQITITTKKSNEGDALKGQNNDESTTQAKSEVPKSEKITLPQEKATKPPILRYVPLSRR 191

Query: 121 KKGESPFVECSKGLKVGDVEILKEGFVTSLTRITKQE 154
           K GES   E  + L +G +EIL+E F T LT+I K E
Sbjct: 192 KNGESSITEYPENLMIGSIEILEESFTTPLTKIEKGE 228

BLAST of Cla010993 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 70/145 (48.28%), Postives = 88/145 (60.69%), Query Frame = 1

Query: 9   KFYQDSIKKVEADFNHFSEVDSHFADAKFYLKNDNISEAMPAEIPRIKNEDKSQLKPQTD 68
           +FY    + VEA+FN FSE +SHF DAKFYLKND+  E +  E+P               
Sbjct: 132 RFYSTR-RTVEANFNPFSEAESHFEDAKFYLKNDSSLEVVSVEVPI-------------- 191

Query: 69  ARKEPREEMDTSNSQKGEASTNSAKPKTLKDEKVTSSPVLRFVSLSRRKKGESPFVECSK 128
                            EAST++AK   L DEK ++ P+LR+V LSRRKKGESPFVE S+
Sbjct: 192 ----------------SEASTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESSQ 245

Query: 129 GLKVGDVEILKEGFVTSLTRITKQE 154
            LKVGD+E+L+E F T LT+ITKQE
Sbjct: 252 ALKVGDIEVLRESFTTPLTKITKQE 245

BLAST of Cla010993 vs. NCBI nr
Match: gi|778688613|ref|XP_011652794.1| (PREDICTED: uncharacterized protein LOC105435099 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 56/92 (60.87%), Postives = 65/92 (70.65%), Query Frame = 1

Query: 63  LKPQTDARKEPREEMDTSNSQKGEASTNSAKPKTLKDEKVTSSPVLRFVSLSRRKKGESP 122
           LKP   AR EP E   T N  KGEA T++ K   LKDEK  + PVL +V LSRRKKGESP
Sbjct: 78  LKPL--ARTEPHESARTFNCGKGEAYTSNTKSMLLKDEKAANPPVLCYVPLSRRKKGESP 137

Query: 123 FVECSKGLKVGDVEILKEGFVTSLTRITKQEV 155
           FVE  K LKVGD+E+LKE F T LT+ITKQ++
Sbjct: 138 FVESPKDLKVGDIEVLKESFTTPLTKITKQKI 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5C5C0_VITVI3.7e-1134.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1[more]
A5B9U3_VITVI5.4e-1059.62Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003694 PE=4 SV=1[more]
M5WXF7_PRUPE7.1e-1037.61Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020726mg PE=4 SV=1[more]
A0A0K9RSA4_SPIOL3.5e-0933.57Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040670 PE=4 SV=1[more]
B0F6T3_CUCSA4.6e-0958.62Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660504|ref|XP_011656345.1|5.1e-4664.71PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659074577|ref|XP_008437679.1|2.0e-2947.17PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
gi|778697752|ref|XP_011654390.1|2.7e-2640.76PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus][more]
gi|659113191|ref|XP_008456446.1|1.0e-2548.28PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo][more]
gi|778688613|ref|XP_011652794.1|1.4e-1960.87PREDICTED: uncharacterized protein LOC105435099 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010993Cla010993.1mRNA