Cla010982 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010982
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box domain containing protein (AHRD V1 ***- Q60DM2_ORYSJ)
Location	Chr1 : 18277787 .. 18278125 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAAGGATTTAACATTTGCTCCTAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACGGGTATTAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGCAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATAAAGGAAGGTCTGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGGCAAGGGCTGCAGCTGCTGGATTGA

mRNA sequence

ATGCCAAAGAAGGATTTAACATTTGCTCCTAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACGGGTATTAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGCAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATAAAGGAAGGTCTGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGGCAAGGGCTGCAGCTGCTGGATTGA

Coding sequence (CDS)

ATGCCAAAGAAGGATTTAACATTTGCTCCTAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACGGGTATTAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGCAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATAAAGGAAGGTCTGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGGCAAGGGCTGCAGCTGCTGGATTGA

Protein sequence

MPKKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMRQGLQLLD

Homology

[Close]

BLAST of Cla010982 vs. TrEMBL
Match: I1HF69_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 29/87 (33.33%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 12  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIK 71
           W   P    KLN DA++  ++ +    A++R++ G  +G     I + +   +AEA A++
Sbjct: 25  WQRPPEGMQKLNADASYLEDLEEGSAGAVIRDANGAFVGATNSVILVVYDATMAEALALQ 84

Query: 72  EGLHFAASLGCPNLIVESDCLEILNQI 99
            G+ FA SLGC NL++ SDC E++ ++
Sbjct: 85  RGILFAQSLGCSNLLINSDCSEVVQEM 111

[Close]

BLAST of Cla010982 vs. TrEMBL
Match: M7Y6S6_TRIUA (Superoxide-generating NADPH oxidase heavy chain subunit B OS=Triticum urartu GN=TRIUR3_31975 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 12  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIK 71
           W      F KLNVDAA+ S+      +AILR+ KGN LG   K I +       EA A++
Sbjct: 858 WCKPDPRFIKLNVDAAYYSDEGVGATAAILRDDKGNFLGAQCKFIPVAVDAITIEALAMR 917

Query: 72  EGLHFAASLGCPNLIVESDCLEILNQIDG 101
           +GL FA S G   +  ESD L+++N  DG
Sbjct: 918 DGLIFANSFGSNRVEAESDSLQVINYCDG 946

[Close]

BLAST of Cla010982 vs. TrEMBL
Match: B9GBH0_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_34967 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 3   KKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPP 62
           KKD      W   P     +NVDA +        + +++R+  G +L  A   +      
Sbjct: 688 KKDSVLRQGWKKPPEGKVMVNVDAGFDEMGGCGTVGSVIRDCSGGVLAAAHSFVPHLVDA 747

Query: 63  PLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL 96
           P+AEAFA+KEGL  A  +GC  LI++SDC+E++
Sbjct: 748 PMAEAFALKEGLMLAQQIGCNRLIIQSDCMEVV 780

[Close]

BLAST of Cla010982 vs. TrEMBL
Match: B8BNV4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37193 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 3   KKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPP 62
           KKD      W   P     +NVDA +        + +++R+  G +L  A   +      
Sbjct: 839 KKDSVLRQGWKKPPEGKVMVNVDAGFDEMGGCGTVGSVIRDCSGGVLAAAHSFVPHLVDA 898

Query: 63  PLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL 96
           P+AEAFA+KEGL  A  +GC  LI++SDC+E++
Sbjct: 899 PMAEAFALKEGLMLAQQIGCNRLIIQSDCMEVV 931

[Close]

BLAST of Cla010982 vs. TrEMBL
Match: Q2QYQ5_ORYSJ (Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g01900 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 3   KKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPP 62
           KKD      W   P     +NVDA +        + +++R+  G +L  A   +      
Sbjct: 658 KKDSVLRQGWKKPPEGKVMVNVDAGFDEMGGCGTVGSVIRDCSGGVLAAAHSFVPHLVDA 717

Query: 63  PLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL 96
           P+AEAFA+KEGL  A  +GC  LI++SDC+E++
Sbjct: 718 PMAEAFALKEGLMLAQQIGCNRLIIQSDCMEVV 750

[Close]

BLAST of Cla010982 vs. NCBI nr
Match: gi|985452327|ref|XP_015386620.1| (PREDICTED: uncharacterized protein LOC107177390 [Citrus sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1


Query: 2   PKKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFP 61
           PK+     P+W P P  + K+NVDAA KS+    G+ + +RN KG  +    K       
Sbjct: 50  PKQGPYAQPSWKPPPKGWLKMNVDAAVKSQEQYVGLGSAIRNHKGEFVAAVVKKSSFYGN 109

Query: 62  PPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI 99
              AE  A+  GL  AA+  C  LI+ESDC E++N +
Sbjct: 110 VASAEVEAVDWGLEIAANAACIPLILESDCKEVVNHL 146

[Close]

BLAST of Cla010982 vs. NCBI nr
Match: gi|985459147|ref|XP_015388012.1| (PREDICTED: uncharacterized protein LOC107177940 [Citrus sinensis])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 9   APNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAF 68
           A  W P P +  K+NVDAA  +E    G+ A++RNS+G ++  A KSI+      +AEA 
Sbjct: 88  AQRWNPPPSSKLKINVDAAVHAESQMAGLGAVIRNSQGQVVVAAVKSINFQGDVSIAEAK 147

Query: 69  AIKEGLHFAASLGCPNLIVESDC 92
           A++ GL  A+     N+IVE+DC
Sbjct: 148 AVQWGLEVASKASFTNVIVETDC 170

[Close]

BLAST of Cla010982 vs. NCBI nr
Match: gi|802795302|ref|XP_012092464.1| (PREDICTED: uncharacterized protein LOC105650199 [Jatropha curcas])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 12  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIK 71
           W  + LN+ KLNVDAA  +     G  A+LR+S   LLGV     +    P  AEA AIK
Sbjct: 78  WQKSELNWVKLNVDAAVYTGGTGAGYGAVLRDSDAVLLGVKVGKFEASLRPIEAEAMAIK 137

Query: 72  EGLHFAASLGCPNLIVESDCLEILNQIDGVGVM 105
           E L +    G   ++VESD L I+N + G G+M
Sbjct: 138 EALSWLKGRGWHQIVVESDNLSIINALQGSGLM 170

[Close]

BLAST of Cla010982 vs. NCBI nr
Match: gi|658037143|ref|XP_008354134.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 5   DLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPL 64
           DL  AP W P P +F K+NVDA+W     +  ++A+LR+  G    VAA  I +     L
Sbjct: 242 DLGLAPRWCPPPYSFIKINVDASWSPVDGKACLAAVLRDHVGQF--VAAHKIAVAVQSAL 301

Query: 65  -AEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDG 101
            AEA A+  G   AA LG   +I ESD LE+++ + G
Sbjct: 302 FAEAMAMLRGCELAAKLGFQRVITESDSLEVVSSLRG 336

[Close]

BLAST of Cla010982 vs. NCBI nr
Match: gi|985441646|ref|XP_006473914.2| (PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1


Query: 2   PKKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFP 61
           P   L     W+  P  + K+NVDAA K E  +TG+  ++RNS+G ++  A K       
Sbjct: 97  PPTSLAIQQKWSYPPEGWFKVNVDAAVKMEQQRTGLGIVIRNSEGKVMAAAMKPSKFLSK 156

Query: 62  PPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI 99
              AEA A K GL  A ++GC  LI+ESD  E++  I
Sbjct: 157 VDAAEAEAAKFGLEIAENVGCFPLIIESDSKEVVELI 193

The following BLAST results are available for this feature:

BLAST of Cla010982 vs. TrEMBL


Match Name	E-value	Identity	Description
I1HF69_BRADI	3.7e-08	33.33	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
M7Y6S6_TRIUA	3.7e-08	41.57	Superoxide-generating NADPH oxidase heavy chain subunit B OS=Triticum urartu GN=...	[more]
B9GBH0_ORYSJ	1.1e-07	34.41	Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_34967 PE=4 SV=1	[more]
B8BNV4_ORYSI	1.1e-07	34.41	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37193 PE=4...	[more]
Q2QYQ5_ORYSJ	1.1e-07	34.41	Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp...	[more]

BLAST of Cla010982 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|985452327\|ref\|XP_015386620.1\|	4.8e-09	37.11	PREDICTED: uncharacterized protein LOC107177390 [Citrus sinensis]	[more]
gi\|985459147\|ref\|XP_015388012.1\|	1.4e-08	40.96	PREDICTED: uncharacterized protein LOC107177940 [Citrus sinensis]	[more]
gi\|802795302\|ref\|XP_012092464.1\|	1.8e-08	41.94	PREDICTED: uncharacterized protein LOC105650199 [Jatropha curcas]	[more]
gi\|658037143\|ref\|XP_008354134.1\|	3.1e-08	40.21	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|985441646\|ref\|XP_006473914.2\|	5.3e-08	38.14	PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010982	Cla010982.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 18..101 score: 2.8
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 8..100 score: 1.6
None	No IPR available	PFAM	PF13456	RVT_3	coord: 23..108 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010982	ClCG01G011030	Watermelon (Charleston Gray)	wcgwmB155

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010982	Cucumber (Chinese Long) v3	cucwmB049
Cla010982	Cucumber (Chinese Long) v3	cucwmB067
Cla010982	Watermelon (97103) v2	wmwmbB246
Cla010982	Wax gourd	wgowmB500
Cla010982	Cucumber (Gy14) v1	cgywmB345
Cla010982	Cucumber (Gy14) v1	cgywmB581
Cla010982	Cucurbita maxima (Rimu)	cmawmB386
Cla010982	Cucurbita moschata (Rifu)	cmowmB193
Cla010982	Cucurbita moschata (Rifu)	cmowmB378
Cla010982	Melon (DHL92) v3.5.1	mewmB160
Cla010982	Cucumber (Chinese Long) v2	cuwmB042
Cla010982	Cucumber (Chinese Long) v2	cuwmB059
Cla010982	Cucurbita pepo (Zucchini)	cpewmB015
Cla010982	Cucurbita pepo (Zucchini)	cpewmB046
Cla010982	Bottle gourd (USVL1VR-Ls)	lsiwmB203
Cla010982	Bottle gourd (USVL1VR-Ls)	lsiwmB205
Cla010982	Cucumber (Gy14) v2	cgybwmB043
Cla010982	Cucumber (Gy14) v2	cgybwmB059
Cla010982	Melon (DHL92) v3.6.1	medwmB156
Cla010982	Melon (DHL92) v3.6.1	medwmB168